data_3Q9U # _model_server_result.job_id P7KWdcm6MpchbyK-oAHZhg _model_server_result.datetime_utc '2025-03-04 22:05:08' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3q9u # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":1070}' # _entry.id 3Q9U # _exptl.entry_id 3Q9U _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 767.534 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'COENZYME A' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 89.96 _cell.angle_beta 90.14 _cell.angle_gamma 113.44 _cell.entry_id 3Q9U _cell.length_a 53.901 _cell.length_b 57.62 _cell.length_c 58.23 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3Q9U _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? dimeric 2 author_defined_assembly 1 ? dimeric 2 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,E 1 1 B,D,F 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 F N N # _chem_comp.formula 'C21 H36 N7 O16 P3 S' _chem_comp.formula_weight 767.534 _chem_comp.id COA _chem_comp.mon_nstd_flag . _chem_comp.name 'COENZYME A' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1A C2A COA sing 70 n y N1A C6A COA doub 71 n y C2A N3A COA doub 72 n y C2A H2A COA sing 73 n n N3A C4A COA sing 74 n y C4A C5A COA doub 75 n y C4A N9A COA sing 76 n y C5A C6A COA sing 77 n y C5A N7A COA sing 78 n y C6A N6A COA sing 79 n n N6A H61A COA sing 80 n n N6A H62A COA sing 81 n n N7A C8A COA doub 82 n y C8A N9A COA sing 83 n y C8A H8A COA sing 84 n n N9A C1B COA sing 85 n n C1B C2B COA sing 86 n n C1B O4B COA sing 87 n n C1B H1B COA sing 88 n n C2B O2B COA sing 89 n n C2B C3B COA sing 90 n n C2B H2B COA sing 91 n n O2B HO2A COA sing 92 n n C3B O3B COA sing 93 n n C3B C4B COA sing 94 n n C3B H3B COA sing 95 n n O3B P3B COA sing 96 n n P3B O7A COA doub 97 n n P3B O8A COA sing 98 n n P3B O9A COA sing 99 n n O8A HOA8 COA sing 100 n n O9A HOA9 COA sing 101 n n C4B O4B COA sing 102 n n C4B C5B COA sing 103 n n C4B H4B COA sing 104 n n C5B O5B COA sing 105 n n C5B H51A COA sing 106 n n C5B H52A COA sing 107 n n O5B P1A COA sing 108 n n P1A O1A COA doub 109 n n P1A O2A COA sing 110 n n P1A O3A COA sing 111 n n O2A HOA2 COA sing 112 n n O3A P2A COA sing 113 n n P2A O4A COA doub 114 n n P2A O5A COA sing 115 n n P2A O6A COA sing 116 n n O5A HOA5 COA sing 117 n n O6A CCP COA sing 118 n n CBP CCP COA sing 119 n n CBP CDP COA sing 120 n n CBP CEP COA sing 121 n n CBP CAP COA sing 122 n n CCP H121 COA sing 123 n n CCP H122 COA sing 124 n n CDP H131 COA sing 125 n n CDP H132 COA sing 126 n n CDP H133 COA sing 127 n n CEP H141 COA sing 128 n n CEP H142 COA sing 129 n n CEP H143 COA sing 130 n n CAP OAP COA sing 131 n n CAP C9P COA sing 132 n n CAP H10 COA sing 133 n n OAP HO1 COA sing 134 n n C9P O9P COA doub 135 n n C9P N8P COA sing 136 n n N8P C7P COA sing 137 n n N8P HN8 COA sing 138 n n C7P C6P COA sing 139 n n C7P H71 COA sing 140 n n C7P H72 COA sing 141 n n C6P C5P COA sing 142 n n C6P H61 COA sing 143 n n C6P H62 COA sing 144 n n C5P O5P COA doub 145 n n C5P N4P COA sing 146 n n N4P C3P COA sing 147 n n N4P HN4 COA sing 148 n n C3P C2P COA sing 149 n n C3P H31 COA sing 150 n n C3P H32 COA sing 151 n n C2P S1P COA sing 152 n n C2P H21 COA sing 153 n n C2P H22 COA sing 154 n n S1P HS1 COA sing 155 n n # _atom_sites.entry_id 3Q9U _atom_sites.fract_transf_matrix[1][1] 0.018553 _atom_sites.fract_transf_matrix[1][2] 0.008046 _atom_sites.fract_transf_matrix[1][3] 0.000049 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018917 _atom_sites.fract_transf_matrix[2][3] 0.000006 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.017173 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 COA A 1 1070 1070 COA COA . F 3 COA B 1 1070 1070 COA COA . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1A COA . . . F 3 34.863 -17.16 3.435 1 32.74 ? N1A COA 1070 B 1 HETATM 2 C C2A COA . . . F 3 34.851 -15.894 2.854 1 21.08 ? C2A COA 1070 B 1 HETATM 3 N N3A COA . . . F 3 33.649 -15.374 2.345 1 31.51 ? N3A COA 1070 B 1 HETATM 4 C C4A COA . . . F 3 32.515 -16.089 2.423 1 33.51 ? C4A COA 1070 B 1 HETATM 5 C C5A COA . . . F 3 32.512 -17.324 2.981 1 35.85 ? C5A COA 1070 B 1 HETATM 6 C C6A COA . . . F 3 33.757 -17.856 3.502 1 36.71 ? C6A COA 1070 B 1 HETATM 7 N N6A COA . . . F 3 33.765 -19.159 4.099 1 42.59 ? N6A COA 1070 B 1 HETATM 8 N N7A COA . . . F 3 31.242 -17.818 2.924 1 35.56 ? N7A COA 1070 B 1 HETATM 9 C C8A COA . . . F 3 30.486 -16.926 2.341 1 28.98 ? C8A COA 1070 B 1 HETATM 10 N N9A COA . . . F 3 31.287 -15.837 2.013 1 32.91 ? N9A COA 1070 B 1 HETATM 11 C C1B COA . . . F 3 30.837 -14.633 1.355 1 26.8 ? C1B COA 1070 B 1 HETATM 12 C C2B COA . . . F 3 29.934 -14.752 0.098 1 49.6 ? C2B COA 1070 B 1 HETATM 13 O O2B COA . . . F 3 30.054 -15.627 -0.956 1 56.66 ? O2B COA 1070 B 1 HETATM 14 C C3B COA . . . F 3 29.276 -13.398 0.067 1 41.06 ? C3B COA 1070 B 1 HETATM 15 O O3B COA . . . F 3 29.261 -12.474 -0.967 1 51.79 ? O3B COA 1070 B 1 HETATM 16 P P3B COA . . . F 3 28.752 -12.766 -2.43 1 49.57 ? P3B COA 1070 B 1 HETATM 17 O O7A COA . . . F 3 29.3 -11.672 -3.31 1 45.54 ? O7A COA 1070 B 1 HETATM 18 O O8A COA . . . F 3 29.216 -14.179 -2.912 1 56.15 ? O8A COA 1070 B 1 HETATM 19 O O9A COA . . . F 3 27.196 -12.713 -2.495 1 46.79 ? O9A COA 1070 B 1 HETATM 20 C C4B COA . . . F 3 29.104 -13.131 1.553 1 33.4 ? C4B COA 1070 B 1 HETATM 21 O O4B COA . . . F 3 30.428 -13.411 2.061 1 33.52 ? O4B COA 1070 B 1 HETATM 22 C C5B COA . . . F 3 27.85 -13.258 2.373 1 21.86 ? C5B COA 1070 B 1 HETATM 23 O O5B COA . . . F 3 27.427 -14.59 2.448 1 26.6 ? O5B COA 1070 B 1 HETATM 24 P P1A COA . . . F 3 26.451 -15.079 3.557 1 37.09 ? P1A COA 1070 B 1 HETATM 25 O O1A COA . . . F 3 26.815 -14.403 4.91 1 42.19 ? O1A COA 1070 B 1 HETATM 26 O O2A COA . . . F 3 26.526 -16.568 3.72 1 46.97 ? O2A COA 1070 B 1 HETATM 27 O O3A COA . . . F 3 25.011 -14.712 3.026 1 28.79 ? O3A COA 1070 B 1 HETATM 28 P P2A COA . . . F 3 23.955 -13.968 3.898 1 27.61 ? P2A COA 1070 B 1 HETATM 29 O O4A COA . . . F 3 22.634 -13.718 3.098 1 33.14 ? O4A COA 1070 B 1 HETATM 30 O O5A COA . . . F 3 23.69 -14.737 5.158 1 35.14 ? O5A COA 1070 B 1 HETATM 31 O O6A COA . . . F 3 24.595 -12.589 4.283 1 28.6 ? O6A COA 1070 B 1 HETATM 32 C CBP COA . . . F 3 25.278 -10.843 5.797 1 37.87 ? CBP COA 1070 B 1 HETATM 33 C CCP COA . . . F 3 24.246 -11.898 5.424 1 19.57 ? CCP COA 1070 B 1 HETATM 34 C CDP COA . . . F 3 26.154 -11.32 6.922 1 37.28 ? CDP COA 1070 B 1 HETATM 35 C CEP COA . . . F 3 26.159 -10.591 4.614 1 32.15 ? CEP COA 1070 B 1 HETATM 36 C CAP COA . . . F 3 24.543 -9.568 6.215 1 33.6 ? CAP COA 1070 B 1 HETATM 37 O OAP COA . . . F 3 23.698 -9.738 7.293 1 30.17 ? OAP COA 1070 B 1 HETATM 38 C C9P COA . . . F 3 25.469 -8.375 6.425 1 33.27 ? C9P COA 1070 B 1 HETATM 39 O O9P COA . . . F 3 25.779 -7.611 5.52 1 36.07 ? O9P COA 1070 B 1 HETATM 40 N N8P COA . . . F 3 25.839 -8.113 7.822 1 30.14 ? N8P COA 1070 B 1 HETATM 41 C C7P COA . . . F 3 26.569 -6.911 8.218 1 29.94 ? C7P COA 1070 B 1 HETATM 42 C C6P COA . . . F 3 25.82 -5.588 8.163 1 9.27 ? C6P COA 1070 B 1 HETATM 43 C C5P COA . . . F 3 26.734 -4.454 8.482 1 23.97 ? C5P COA 1070 B 1 HETATM 44 O O5P COA . . . F 3 27.587 -4.573 9.352 1 19.11 ? O5P COA 1070 B 1 HETATM 45 N N4P COA . . . F 3 26.585 -3.257 7.702 1 20.29 ? N4P COA 1070 B 1 HETATM 46 C C3P COA . . . F 3 27.131 -2.035 8.216 1 34.43 ? C3P COA 1070 B 1 HETATM 47 C C2P COA . . . F 3 26.255 -0.832 8.037 1 42.71 ? C2P COA 1070 B 1 HETATM 48 S S1P COA . . . F 3 27.072 0.706 8.332 1 67.91 ? S1P COA 1070 B 1 # _model_server_stats.io_time_ms 0 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 29 _model_server_stats.query_time_ms 735 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 48 #