data_3Q9X # _model_server_result.job_id fhVEfNSPSotqkEiqvId-Tw _model_server_result.datetime_utc '2024-10-12 13:19:27' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3q9x # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":401}' # _entry.id 3Q9X # _exptl.entry_id 3Q9X _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 270.237 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 3-METHYL-1,6,8-TRIHYDROXYANTHRAQUINONE _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3Q9X _cell.length_a 128.01 _cell.length_b 128.01 _cell.length_c 124.597 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3Q9X _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,G,H,P 1 1 B,I,J,K,L,M,N,O,Q 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 I N N # _chem_comp.formula 'C15 H10 O5' _chem_comp.formula_weight 270.237 _chem_comp.id EMO _chem_comp.mon_nstd_flag . _chem_comp.name 3-METHYL-1,6,8-TRIHYDROXYANTHRAQUINONE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms EMODIN # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EMO sing 142 n n C1 C2 EMO doub 143 n y C1 C20 EMO sing 144 n y O1 HO1 EMO sing 145 n n C2 C3 EMO sing 146 n y C2 H2 EMO sing 147 n n C3 O3 EMO sing 148 n n C3 C4 EMO doub 149 n y O3 HO3 EMO sing 150 n n C4 C5 EMO sing 151 n y C4 H4 EMO sing 152 n n C5 C6 EMO sing 153 n n C5 C20 EMO doub 154 n y C6 O6 EMO doub 155 n n C6 C7 EMO sing 156 n n C7 C8 EMO doub 157 n y C7 C18 EMO sing 158 n y C8 C9 EMO sing 159 n y C8 H8 EMO sing 160 n n C9 C10 EMO sing 161 n n C9 C16 EMO doub 162 n y C10 H101 EMO sing 163 n n C10 H102 EMO sing 164 n n C10 H103 EMO sing 165 n n C16 C17 EMO sing 166 n y C16 H16 EMO sing 167 n n C17 O17 EMO sing 168 n n C17 C18 EMO doub 169 n y O17 H17 EMO sing 170 n n C18 C19 EMO sing 171 n n C19 O19 EMO doub 172 n n C19 C20 EMO sing 173 n n # _atom_sites.entry_id 3Q9X _atom_sites.fract_transf_matrix[1][1] 0.007812 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007812 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008026 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 EMO A 1 400 400 EMO EMO . D 3 EDO A 1 337 1 EDO EG . E 4 7PE A 1 338 1 7PE 5PG . F 5 SO4 A 1 339 3 SO4 SO4 . G 5 SO4 A 1 340 4 SO4 SO4 . H 5 SO4 A 1 341 7 SO4 SO4 . I 2 EMO B 1 401 401 EMO EMO . J 6 PEG B 1 337 1 PEG PEG . K 3 EDO B 1 338 2 EDO EG . L 5 SO4 B 1 339 1 SO4 SO4 . M 5 SO4 B 1 340 2 SO4 SO4 . N 5 SO4 B 1 341 5 SO4 SO4 . O 5 SO4 B 1 342 6 SO4 SO4 . P 7 HOH A 1 342 2 HOH HOH . P 7 HOH A 2 343 3 HOH HOH . P 7 HOH A 3 344 4 HOH HOH . P 7 HOH A 4 345 5 HOH HOH . P 7 HOH A 5 346 6 HOH HOH . P 7 HOH A 6 347 8 HOH HOH . P 7 HOH A 7 348 9 HOH HOH . P 7 HOH A 8 349 13 HOH HOH . P 7 HOH A 9 350 14 HOH HOH . P 7 HOH A 10 351 15 HOH HOH . P 7 HOH A 11 352 16 HOH HOH . P 7 HOH A 12 353 18 HOH HOH . P 7 HOH A 13 354 22 HOH HOH . P 7 HOH A 14 355 24 HOH HOH . P 7 HOH A 15 356 25 HOH HOH . P 7 HOH A 16 357 27 HOH HOH . P 7 HOH A 17 358 28 HOH HOH . P 7 HOH A 18 359 29 HOH HOH . P 7 HOH A 19 360 31 HOH HOH . P 7 HOH A 20 361 32 HOH HOH . P 7 HOH A 21 362 34 HOH HOH . P 7 HOH A 22 363 37 HOH HOH . P 7 HOH A 23 364 38 HOH HOH . P 7 HOH A 24 365 40 HOH HOH . P 7 HOH A 25 366 41 HOH HOH . P 7 HOH A 26 367 43 HOH HOH . P 7 HOH A 27 368 45 HOH HOH . P 7 HOH A 28 369 47 HOH HOH . P 7 HOH A 29 370 48 HOH HOH . P 7 HOH A 30 371 57 HOH HOH . P 7 HOH A 31 372 59 HOH HOH . P 7 HOH A 32 373 60 HOH HOH . P 7 HOH A 33 374 62 HOH HOH . P 7 HOH A 34 375 63 HOH HOH . P 7 HOH A 35 376 65 HOH HOH . P 7 HOH A 36 377 66 HOH HOH . P 7 HOH A 37 378 67 HOH HOH . P 7 HOH A 38 379 68 HOH HOH . P 7 HOH A 39 380 69 HOH HOH . P 7 HOH A 40 381 72 HOH HOH . P 7 HOH A 41 382 78 HOH HOH . P 7 HOH A 42 383 80 HOH HOH . P 7 HOH A 43 384 83 HOH HOH . P 7 HOH A 44 385 84 HOH HOH . P 7 HOH A 45 386 85 HOH HOH . P 7 HOH A 46 387 87 HOH HOH . P 7 HOH A 47 388 89 HOH HOH . P 7 HOH A 48 389 90 HOH HOH . P 7 HOH A 49 390 91 HOH HOH . P 7 HOH A 50 391 94 HOH HOH . P 7 HOH A 51 392 98 HOH HOH . P 7 HOH A 52 393 103 HOH HOH . P 7 HOH A 53 394 104 HOH HOH . P 7 HOH A 54 395 106 HOH HOH . P 7 HOH A 55 396 109 HOH HOH . P 7 HOH A 56 397 113 HOH HOH . P 7 HOH A 57 398 116 HOH HOH . P 7 HOH A 58 399 118 HOH HOH . P 7 HOH A 59 401 119 HOH HOH . P 7 HOH A 60 402 124 HOH HOH . P 7 HOH A 61 403 126 HOH HOH . P 7 HOH A 62 404 128 HOH HOH . P 7 HOH A 63 405 132 HOH HOH . P 7 HOH A 64 406 133 HOH HOH . P 7 HOH A 65 407 134 HOH HOH . P 7 HOH A 66 408 135 HOH HOH . P 7 HOH A 67 409 137 HOH HOH . P 7 HOH A 68 410 140 HOH HOH . P 7 HOH A 69 411 141 HOH HOH . P 7 HOH A 70 412 145 HOH HOH . P 7 HOH A 71 413 146 HOH HOH . P 7 HOH A 72 414 147 HOH HOH . P 7 HOH A 73 415 148 HOH HOH . P 7 HOH A 74 416 149 HOH HOH . P 7 HOH A 75 417 154 HOH HOH . P 7 HOH A 76 418 157 HOH HOH . P 7 HOH A 77 419 163 HOH HOH . P 7 HOH A 78 420 164 HOH HOH . P 7 HOH A 79 421 165 HOH HOH . P 7 HOH A 80 422 166 HOH HOH . P 7 HOH A 81 423 168 HOH HOH . P 7 HOH A 82 424 169 HOH HOH . P 7 HOH A 83 425 172 HOH HOH . P 7 HOH A 84 426 173 HOH HOH . P 7 HOH A 85 427 174 HOH HOH . P 7 HOH A 86 428 176 HOH HOH . P 7 HOH A 87 429 179 HOH HOH . P 7 HOH A 88 430 180 HOH HOH . P 7 HOH A 89 431 181 HOH HOH . P 7 HOH A 90 432 185 HOH HOH . P 7 HOH A 91 433 187 HOH HOH . P 7 HOH A 92 434 188 HOH HOH . P 7 HOH A 93 435 191 HOH HOH . P 7 HOH A 94 436 195 HOH HOH . P 7 HOH A 95 437 199 HOH HOH . P 7 HOH A 96 438 200 HOH HOH . P 7 HOH A 97 439 201 HOH HOH . P 7 HOH A 98 440 203 HOH HOH . P 7 HOH A 99 441 204 HOH HOH . P 7 HOH A 100 442 205 HOH HOH . P 7 HOH A 101 443 206 HOH HOH . P 7 HOH A 102 444 207 HOH HOH . P 7 HOH A 103 445 209 HOH HOH . P 7 HOH A 104 446 210 HOH HOH . P 7 HOH A 105 447 211 HOH HOH . P 7 HOH A 106 448 213 HOH HOH . P 7 HOH A 107 449 214 HOH HOH . P 7 HOH A 108 450 221 HOH HOH . P 7 HOH A 109 451 229 HOH HOH . P 7 HOH A 110 452 232 HOH HOH . P 7 HOH A 111 453 234 HOH HOH . P 7 HOH A 112 454 235 HOH HOH . P 7 HOH A 113 455 242 HOH HOH . P 7 HOH A 114 456 243 HOH HOH . P 7 HOH A 115 457 244 HOH HOH . P 7 HOH A 116 458 247 HOH HOH . Q 7 HOH B 1 343 1 HOH HOH . Q 7 HOH B 2 344 7 HOH HOH . Q 7 HOH B 3 345 10 HOH HOH . Q 7 HOH B 4 346 11 HOH HOH . Q 7 HOH B 5 347 12 HOH HOH . Q 7 HOH B 6 348 17 HOH HOH . Q 7 HOH B 7 349 19 HOH HOH . Q 7 HOH B 8 350 20 HOH HOH . Q 7 HOH B 9 351 21 HOH HOH . Q 7 HOH B 10 352 23 HOH HOH . Q 7 HOH B 11 353 26 HOH HOH . Q 7 HOH B 12 354 30 HOH HOH . Q 7 HOH B 13 355 33 HOH HOH . Q 7 HOH B 14 356 35 HOH HOH . Q 7 HOH B 15 357 36 HOH HOH . Q 7 HOH B 16 358 39 HOH HOH . Q 7 HOH B 17 359 42 HOH HOH . Q 7 HOH B 18 360 44 HOH HOH . Q 7 HOH B 19 361 46 HOH HOH . Q 7 HOH B 20 362 49 HOH HOH . Q 7 HOH B 21 363 50 HOH HOH . Q 7 HOH B 22 364 51 HOH HOH . Q 7 HOH B 23 365 52 HOH HOH . Q 7 HOH B 24 366 53 HOH HOH . Q 7 HOH B 25 367 54 HOH HOH . Q 7 HOH B 26 368 55 HOH HOH . Q 7 HOH B 27 369 56 HOH HOH . Q 7 HOH B 28 370 58 HOH HOH . Q 7 HOH B 29 371 61 HOH HOH . Q 7 HOH B 30 372 64 HOH HOH . Q 7 HOH B 31 373 70 HOH HOH . Q 7 HOH B 32 374 71 HOH HOH . Q 7 HOH B 33 375 73 HOH HOH . Q 7 HOH B 34 376 74 HOH HOH . Q 7 HOH B 35 377 75 HOH HOH . Q 7 HOH B 36 378 76 HOH HOH . Q 7 HOH B 37 379 77 HOH HOH . Q 7 HOH B 38 380 79 HOH HOH . Q 7 HOH B 39 381 81 HOH HOH . Q 7 HOH B 40 382 82 HOH HOH . Q 7 HOH B 41 383 86 HOH HOH . Q 7 HOH B 42 384 88 HOH HOH . Q 7 HOH B 43 385 92 HOH HOH . Q 7 HOH B 44 386 93 HOH HOH . Q 7 HOH B 45 387 95 HOH HOH . Q 7 HOH B 46 388 96 HOH HOH . Q 7 HOH B 47 389 97 HOH HOH . Q 7 HOH B 48 390 99 HOH HOH . Q 7 HOH B 49 391 100 HOH HOH . Q 7 HOH B 50 392 101 HOH HOH . Q 7 HOH B 51 393 102 HOH HOH . Q 7 HOH B 52 394 105 HOH HOH . Q 7 HOH B 53 395 107 HOH HOH . Q 7 HOH B 54 396 108 HOH HOH . Q 7 HOH B 55 397 110 HOH HOH . Q 7 HOH B 56 398 111 HOH HOH . Q 7 HOH B 57 399 112 HOH HOH . Q 7 HOH B 58 400 114 HOH HOH . Q 7 HOH B 59 402 115 HOH HOH . Q 7 HOH B 60 403 117 HOH HOH . Q 7 HOH B 61 404 120 HOH HOH . Q 7 HOH B 62 405 121 HOH HOH . Q 7 HOH B 63 406 122 HOH HOH . Q 7 HOH B 64 407 123 HOH HOH . Q 7 HOH B 65 408 125 HOH HOH . Q 7 HOH B 66 409 127 HOH HOH . Q 7 HOH B 67 410 129 HOH HOH . Q 7 HOH B 68 411 131 HOH HOH . Q 7 HOH B 69 412 136 HOH HOH . Q 7 HOH B 70 413 138 HOH HOH . Q 7 HOH B 71 414 139 HOH HOH . Q 7 HOH B 72 415 142 HOH HOH . Q 7 HOH B 73 416 143 HOH HOH . Q 7 HOH B 74 417 144 HOH HOH . Q 7 HOH B 75 418 150 HOH HOH . Q 7 HOH B 76 419 151 HOH HOH . Q 7 HOH B 77 420 152 HOH HOH . Q 7 HOH B 78 421 153 HOH HOH . Q 7 HOH B 79 422 155 HOH HOH . Q 7 HOH B 80 423 156 HOH HOH . Q 7 HOH B 81 424 158 HOH HOH . Q 7 HOH B 82 425 159 HOH HOH . Q 7 HOH B 83 426 160 HOH HOH . Q 7 HOH B 84 427 161 HOH HOH . Q 7 HOH B 85 428 162 HOH HOH . Q 7 HOH B 86 429 167 HOH HOH . Q 7 HOH B 87 430 170 HOH HOH . Q 7 HOH B 88 431 171 HOH HOH . Q 7 HOH B 89 432 175 HOH HOH . Q 7 HOH B 90 433 177 HOH HOH . Q 7 HOH B 91 434 178 HOH HOH . Q 7 HOH B 92 435 182 HOH HOH . Q 7 HOH B 93 436 183 HOH HOH . Q 7 HOH B 94 437 184 HOH HOH . Q 7 HOH B 95 438 186 HOH HOH . Q 7 HOH B 96 439 189 HOH HOH . Q 7 HOH B 97 440 190 HOH HOH . Q 7 HOH B 98 441 192 HOH HOH . Q 7 HOH B 99 442 193 HOH HOH . Q 7 HOH B 100 443 194 HOH HOH . Q 7 HOH B 101 444 196 HOH HOH . Q 7 HOH B 102 445 197 HOH HOH . Q 7 HOH B 103 446 198 HOH HOH . Q 7 HOH B 104 447 202 HOH HOH . Q 7 HOH B 105 448 208 HOH HOH . Q 7 HOH B 106 449 212 HOH HOH . Q 7 HOH B 107 450 215 HOH HOH . Q 7 HOH B 108 451 216 HOH HOH . Q 7 HOH B 109 452 217 HOH HOH . Q 7 HOH B 110 453 218 HOH HOH . Q 7 HOH B 111 454 219 HOH HOH . Q 7 HOH B 112 455 220 HOH HOH . Q 7 HOH B 113 456 222 HOH HOH . Q 7 HOH B 114 457 223 HOH HOH . Q 7 HOH B 115 458 224 HOH HOH . Q 7 HOH B 116 459 225 HOH HOH . Q 7 HOH B 117 460 226 HOH HOH . Q 7 HOH B 118 461 227 HOH HOH . Q 7 HOH B 119 462 228 HOH HOH . Q 7 HOH B 120 463 230 HOH HOH . Q 7 HOH B 121 464 231 HOH HOH . Q 7 HOH B 122 465 233 HOH HOH . Q 7 HOH B 123 466 236 HOH HOH . Q 7 HOH B 124 467 237 HOH HOH . Q 7 HOH B 125 468 238 HOH HOH . Q 7 HOH B 126 469 239 HOH HOH . Q 7 HOH B 127 470 240 HOH HOH . Q 7 HOH B 128 471 241 HOH HOH . Q 7 HOH B 129 472 245 HOH HOH . Q 7 HOH B 130 473 246 HOH HOH . Q 7 HOH B 131 474 248 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EMO . . . I 2 -19.607 67.882 -6.845 1 32.22 ? C1 EMO 401 B 1 HETATM 2 O O1 EMO . . . I 2 -20.551 68.832 -7.117 1 32.98 ? O1 EMO 401 B 1 HETATM 3 C C2 EMO . . . I 2 -19.099 67.145 -7.911 1 32.99 ? C2 EMO 401 B 1 HETATM 4 C C3 EMO . . . I 2 -18.131 66.179 -7.637 1 33.77 ? C3 EMO 401 B 1 HETATM 5 O O3 EMO . . . I 2 -17.679 65.459 -8.66 1 28.58 ? O3 EMO 401 B 1 HETATM 6 C C4 EMO . . . I 2 -17.65 65.941 -6.326 1 36.63 ? C4 EMO 401 B 1 HETATM 7 C C5 EMO . . . I 2 -18.18 66.701 -5.26 1 34.27 ? C5 EMO 401 B 1 HETATM 8 C C6 EMO . . . I 2 -17.74 66.486 -3.936 1 37.38 ? C6 EMO 401 B 1 HETATM 9 O O6 EMO . . . I 2 -16.848 65.614 -3.709 1 39.18 ? O6 EMO 401 B 1 HETATM 10 C C7 EMO . . . I 2 -18.28 67.241 -2.873 1 36.05 ? C7 EMO 401 B 1 HETATM 11 C C8 EMO . . . I 2 -17.823 67.045 -1.542 1 37.16 ? C8 EMO 401 B 1 HETATM 12 C C9 EMO . . . I 2 -18.352 67.826 -0.481 1 39.84 ? C9 EMO 401 B 1 HETATM 13 C C10 EMO . . . I 2 -17.954 67.654 0.978 1 37.98 ? C10 EMO 401 B 1 HETATM 14 C C16 EMO . . . I 2 -19.351 68.771 -0.779 1 37.88 ? C16 EMO 401 B 1 HETATM 15 C C17 EMO . . . I 2 -19.803 68.976 -2.08 1 36.13 ? C17 EMO 401 B 1 HETATM 16 O O17 EMO . . . I 2 -20.763 69.948 -2.263 1 39.6 ? O17 EMO 401 B 1 HETATM 17 C C18 EMO . . . I 2 -19.268 68.218 -3.147 1 34.91 ? C18 EMO 401 B 1 HETATM 18 C C19 EMO . . . I 2 -19.703 68.424 -4.477 1 33.56 ? C19 EMO 401 B 1 HETATM 19 O O19 EMO . . . I 2 -20.604 69.275 -4.765 1 29.64 ? O19 EMO 401 B 1 HETATM 20 C C20 EMO . . . I 2 -19.164 67.649 -5.528 1 31.49 ? C20 EMO 401 B 1 # _model_server_stats.io_time_ms 16 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 318 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 20 #