data_3QA2
#
_model_server_result.job_id            w_sykZeUEFlExaqr8JKUJA 
_model_server_result.datetime_utc      '2024-11-19 19:29:38' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3qa2 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":302}' 
#
_entry.id    3QA2 
#
_exptl.entry_id    3QA2 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              390.485 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            N~8~-(cyclopropylmethyl)-N~4~-(2-methylphenyl)-2-(piperazin-1-yl)pyrimido[5,4-d]pyrimidine-4,8-diamine 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            3QA2 
_cell.length_a            82.851 
_cell.length_b            86.546 
_cell.length_c            137.453 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3QA2 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 21 21 21' 
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_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 D N N 
? 3 G N N 
#
_chem_comp.formula           'C21 H26 N8' 
_chem_comp.formula_weight    390.485 
_chem_comp.id                XNA 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              N~8~-(cyclopropylmethyl)-N~4~-(2-methylphenyl)-2-(piperazin-1-yl)pyrimido[5,4-d]pyrimidine-4,8-diamine 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C01 C02 XNA sing 380 n n 
C01 H01 XNA sing 381 n n 
C01 H01A XNA sing 382 n n 
C01 H01B XNA sing 383 n n 
C03 C02 XNA doub 384 n y 
C02 C07 XNA sing 385 n y 
C03 C04 XNA sing 386 n y 
C03 H03 XNA sing 387 n n 
C04 C05 XNA doub 388 n y 
C04 H04 XNA sing 389 n n 
C05 C06 XNA sing 390 n y 
C05 H05 XNA sing 391 n n 
C07 C06 XNA doub 392 n y 
C06 H06 XNA sing 393 n n 
C07 N08 XNA sing 394 n n 
N08 C09 XNA sing 395 n n 
N08 HN08 XNA sing 396 n n 
C09 N10 XNA doub 397 n y 
C09 C18 XNA sing 398 n y 
N10 C11 XNA sing 399 n y 
C11 N12 XNA doub 400 n y 
C11 N24 XNA sing 401 n n 
C13 N12 XNA sing 402 n y 
C18 C13 XNA doub 403 n y 
C13 C14 XNA sing 404 n y 
N15 C14 XNA doub 405 n y 
C14 N19 XNA sing 406 n n 
C16 N15 XNA sing 407 n y 
N17 C16 XNA doub 408 n y 
C16 H16 XNA sing 409 n n 
N17 C18 XNA sing 410 n y 
N19 C20 XNA sing 411 n n 
N19 HN19 XNA sing 412 n n 
C21 C20 XNA sing 413 n n 
C20 H20 XNA sing 414 n n 
C20 H20A XNA sing 415 n n 
C21 C23 XNA sing 416 n n 
C21 C22 XNA sing 417 n n 
C21 H21 XNA sing 418 n n 
C23 C22 XNA sing 419 n n 
C22 H22 XNA sing 420 n n 
C22 H22A XNA sing 421 n n 
C23 H23 XNA sing 422 n n 
C23 H23A XNA sing 423 n n 
C25 N24 XNA sing 424 n n 
N24 C29 XNA sing 425 n n 
C26 C25 XNA sing 426 n n 
C25 H25 XNA sing 427 n n 
C25 H25A XNA sing 428 n n 
C26 N27 XNA sing 429 n n 
C26 H26 XNA sing 430 n n 
C26 H26A XNA sing 431 n n 
N27 C28 XNA sing 432 n n 
N27 HN27 XNA sing 433 n n 
C28 C29 XNA sing 434 n n 
C28 H28 XNA sing 435 n n 
C28 H28A XNA sing 436 n n 
C29 H29 XNA sing 437 n n 
C29 H29A XNA sing 438 n n 
#
_atom_sites.entry_id                     3QA2 
_atom_sites.fract_transf_matrix[1][1]    0.01207 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.011555 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007275 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 SO4 A 1 301 1 SO4 SO4 . 
D 3 XNA A 1 302 1 XNA XNA . 
E 2 SO4 B 1 301 2 SO4 SO4 . 
F 2 SO4 B 1 302 3 SO4 SO4 . 
G 3 XNA B 1 303 2 XNA XNA . 
H 4 HOH A 1 401 3 HOH HOH . 
H 4 HOH A 2 402 5 HOH HOH . 
H 4 HOH A 3 403 6 HOH HOH . 
I 4 HOH B 1 401 1 HOH HOH . 
I 4 HOH B 2 402 2 HOH HOH . 
I 4 HOH B 3 403 4 HOH HOH . 
I 4 HOH B 4 404 7 HOH HOH . 
I 4 HOH B 5 405 8 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C01 XNA . . . D 3 -3.116 -1.207 15.15 1 63.97 ? C01 XNA 302 A 1 
HETATM 2 C C02 XNA . . . D 3 -3.559 0.101 15.815 1 66.36 ? C02 XNA 302 A 1 
HETATM 3 C C03 XNA . . . D 3 -3.699 1.32 15.064 1 70.99 ? C03 XNA 302 A 1 
HETATM 4 C C04 XNA . . . D 3 -4.137 2.528 15.713 1 73.74 ? C04 XNA 302 A 1 
HETATM 5 C C05 XNA . . . D 3 -4.445 2.552 17.124 1 67.22 ? C05 XNA 302 A 1 
HETATM 6 C C06 XNA . . . D 3 -4.299 1.339 17.891 1 62.81 ? C06 XNA 302 A 1 
HETATM 7 C C07 XNA . . . D 3 -3.858 0.134 17.235 1 68.1 ? C07 XNA 302 A 1 
HETATM 8 N N08 XNA . . . D 3 -3.689 -1.089 17.994 1 65.86 ? N08 XNA 302 A 1 
HETATM 9 C C09 XNA . . . D 3 -4.716 -1.448 18.963 1 69.36 ? C09 XNA 302 A 1 
HETATM 10 N N10 XNA . . . D 3 -5.69 -0.561 19.416 1 71.16 ? N10 XNA 302 A 1 
HETATM 11 C C11 XNA . . . D 3 -6.599 -1.03 20.362 1 75.64 ? C11 XNA 302 A 1 
HETATM 12 N N12 XNA . . . D 3 -6.578 -2.332 20.881 1 75.71 ? N12 XNA 302 A 1 
HETATM 13 C C13 XNA . . . D 3 -5.592 -3.193 20.409 1 69.61 ? C13 XNA 302 A 1 
HETATM 14 C C14 XNA . . . D 3 -5.473 -4.58 20.873 1 70.8 ? C14 XNA 302 A 1 
HETATM 15 N N15 XNA . . . D 3 -4.504 -5.402 20.409 1 74.53 ? N15 XNA 302 A 1 
HETATM 16 C C16 XNA . . . D 3 -3.609 -4.913 19.459 1 68.1 ? C16 XNA 302 A 1 
HETATM 17 N N17 XNA . . . D 3 -3.624 -3.639 18.946 1 62.51 ? N17 XNA 302 A 1 
HETATM 18 C C18 XNA . . . D 3 -4.61 -2.824 19.434 1 69.12 ? C18 XNA 302 A 1 
HETATM 19 N N19 XNA . . . D 3 -6.428 -5.056 21.883 1 71.47 ? N19 XNA 302 A 1 
HETATM 20 C C20 XNA . . . D 3 -6.297 -6.434 22.359 1 72.29 ? C20 XNA 302 A 1 
HETATM 21 C C21 XNA . . . D 3 -7.426 -7.243 21.697 1 80.1 ? C21 XNA 302 A 1 
HETATM 22 C C22 XNA . . . D 3 -8.334 -7.953 22.703 1 87.51 ? C22 XNA 302 A 1 
HETATM 23 C C23 XNA . . . D 3 -7.336 -8.762 21.859 1 81.55 ? C23 XNA 302 A 1 
HETATM 24 N N24 XNA . . . D 3 -7.668 -0.133 20.915 1 73.14 ? N24 XNA 302 A 1 
HETATM 25 C C25 XNA . . . D 3 -7.712 1.27 20.642 1 72.02 ? C25 XNA 302 A 1 
HETATM 26 C C26 XNA . . . D 3 -9.17 1.604 20.256 1 77.5 ? C26 XNA 302 A 1 
HETATM 27 N N27 XNA . . . D 3 -10.108 1.227 21.405 1 72.67 ? N27 XNA 302 A 1 
HETATM 28 C C28 XNA . . . D 3 -9.936 -0.261 21.731 1 70.67 ? C28 XNA 302 A 1 
HETATM 29 C C29 XNA . . . D 3 -8.452 -0.557 22.039 1 75.04 ? C29 XNA 302 A 1 
#
_model_server_stats.io_time_ms              7 
_model_server_stats.parse_time_ms           6 
_model_server_stats.create_model_time_ms    6 
_model_server_stats.query_time_ms           276 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           29 
#