data_3QAE
#
_model_server_result.job_id            wD51qzTja-Np0mq-gbsQAw 
_model_server_result.datetime_utc      '2024-12-02 12:45:26' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3qae 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"Z","auth_seq_id":1019}' 
#
_entry.id    3QAE 
#
_exptl.entry_id    3QAE 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              22.99 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'SODIUM ION' 
_entity.pdbx_number_of_molecules    27 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            3QAE 
_cell.length_a            73.483 
_cell.length_b            90.367 
_cell.length_c            160.621 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3QAE 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        20 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 2 2 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 4_566 x,-y+1,-z+1 1 0 0 0 -1 0 0 0 -1 0 90.367 160.621 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 D N N 
? 4 E N N 
? 4 F N N 
? 4 G N N 
? 4 H N N 
? 4 I N N 
? 4 J N N 
? 4 K N N 
? 4 L N N 
? 4 M N N 
? 4 N N N 
? 4 O N N 
? 4 P N N 
? 4 Q N N 
? 4 R N N 
? 4 S N N 
? 4 T N N 
? 4 U N N 
? 4 V N N 
? 4 W N N 
? 4 X N N 
? 4 Y N N 
? 4 Z N N 
? 4 AA N N 
? 4 BA N N 
? 4 CA N N 
? 4 DA N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A O SER 43 A SER 9 1_555 AA NA NA . A NA 1020 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.721 ? 
metalc ? metalc2 A OH TYR 47 A TYR 13 1_555 R NA NA . A NA 1011 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.64 ? 
metalc ? metalc3 A OG SER 67 A SER 33 1_555 T NA NA . A NA 1013 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.874 ? 
metalc ? metalc4 A O LEU 68 A LEU 34 1_555 R NA NA . A NA 1011 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.528 ? 
metalc ? metalc5 A O GLU 72 A GLU 38 1_555 T NA NA . A NA 1013 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.911 ? 
metalc ? metalc6 A OD2 ASP 80 A ASP 46 1_555 BA NA NA . A NA 1021 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.873 ? 
metalc ? metalc7 A OG SER 95 A SER 61 1_555 N NA NA . A NA 1007 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.002 ? 
metalc ? metalc8 A O GLU 115 A GLU 81 1_555 J NA NA . A NA 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.489 ? 
metalc ? metalc9 A O GLN 141 A GLN 107 1_555 D NA NA . A NA 997 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.016 ? 
metalc ? metalc10 A OG1 THR 211 A THR 177 1_555 S NA NA . A NA 1012 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.886 ? 
metalc ? metalc11 A O SER 245 A SER 211 1_555 U NA NA . A NA 1014 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.624 ? 
metalc ? metalc12 A O ASN 246 A ASN 212 1_555 Q NA NA . A NA 1010 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.751 ? 
metalc ? metalc13 A O THR 249 A THR 215 1_555 L NA NA . A NA 1005 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.699 ? 
metalc ? metalc14 A OG SER 256 A SER 222 1_555 K NA NA . A NA 1004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.883 ? 
metalc ? metalc15 A O ALA 281 A ALA 247 1_555 X NA NA . A NA 1017 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.729 ? 
metalc ? metalc16 A O SER 282 A SER 248 1_555 P NA NA . A NA 1009 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.849 ? 
metalc ? metalc17 A OG1 THR 294 A THR 260 1_555 I NA NA . A NA 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.766 ? 
metalc ? metalc18 A O HIS 295 A HIS 261 1_555 O NA NA . A NA 1008 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.725 ? 
metalc ? metalc19 A O ALA 316 A ALA 282 1_555 Q NA NA . A NA 1010 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.08 ? 
metalc ? metalc20 A O ILE 317 A ILE 283 1_555 F NA NA . A NA 999 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.871 ? 
metalc ? metalc21 A OE1 GLU 318 A GLU 284 1_555 M NA NA . A NA 1006 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.796 ? 
metalc ? metalc22 A O SER 335 A SER 301 1_555 P NA NA . A NA 1009 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.536 ? 
metalc ? metalc23 A O PRO 353 A PRO 319 1_555 F NA NA . A NA 999 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.678 ? 
metalc ? metalc24 A O MET 354 A MET 320 1_555 V NA NA . A NA 1015 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.885 ? 
metalc ? metalc25 A OG SER 362 A SER 328 1_555 Z NA NA . A NA 1019 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.42 ? 
metalc ? metalc26 A O GLN 395 A GLN 361 1_555 G NA NA . A NA 1000 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.933 ? 
metalc ? metalc27 B O5 CIT . A CIT 502 1_555 H NA NA . A NA 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.955 ? 
metalc ? metalc28 B O1 CIT . A CIT 502 1_555 O NA NA . A NA 1008 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.915 ? 
metalc ? metalc29 G NA NA . A NA 1000 1_555 EA O HOH . A HOH 1083 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.941 ? 
metalc ? metalc30 S NA NA . A NA 1012 1_555 EA O HOH . A HOH 1057 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.646 ? 
metalc ? metalc31 U NA NA . A NA 1014 1_555 EA O HOH . A HOH 1029 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.117 ? 
metalc ? metalc32 U NA NA . A NA 1014 1_555 EA O HOH . A HOH 1121 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.701 ? 
metalc ? metalc33 Y NA NA . A NA 1018 1_555 EA O HOH . A HOH 1125 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.505 ? 
metalc ? metalc34 DA NA NA . A NA 1023 1_555 EA O HOH . A HOH 1037 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.974 ? 
#
_chem_comp.formula           'Na 1' 
_chem_comp.formula_weight    22.99 
_chem_comp.id                NA 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'SODIUM ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     3QAE 
_atom_sites.fract_transf_matrix[1][1]    0.013609 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.011066 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006226 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 CIT A 1 502 502 CIT CIT . 
C 3 GOL A 1 501 501 GOL GOL . 
D 4 NA A 1 997 997 NA NA . 
E 4 NA A 1 998 998 NA NA . 
F 4 NA A 1 999 999 NA NA . 
G 4 NA A 1 1000 1000 NA NA . 
H 4 NA A 1 1001 1001 NA NA . 
I 4 NA A 1 1002 1002 NA NA . 
J 4 NA A 1 1003 1003 NA NA . 
K 4 NA A 1 1004 1004 NA NA . 
L 4 NA A 1 1005 1005 NA NA . 
M 4 NA A 1 1006 1006 NA NA . 
N 4 NA A 1 1007 1007 NA NA . 
O 4 NA A 1 1008 1008 NA NA . 
P 4 NA A 1 1009 1009 NA NA . 
Q 4 NA A 1 1010 1010 NA NA . 
R 4 NA A 1 1011 1011 NA NA . 
S 4 NA A 1 1012 1012 NA NA . 
T 4 NA A 1 1013 1013 NA NA . 
U 4 NA A 1 1014 1014 NA NA . 
V 4 NA A 1 1015 1015 NA NA . 
W 4 NA A 1 1016 1016 NA NA . 
X 4 NA A 1 1017 1017 NA NA . 
Y 4 NA A 1 1018 1018 NA NA . 
Z 4 NA A 1 1019 1019 NA NA . 
AA 4 NA A 1 1020 1020 NA NA . 
BA 4 NA A 1 1021 1021 NA NA . 
CA 4 NA A 1 1022 1022 NA NA . 
DA 4 NA A 1 1023 1023 NA NA . 
EA 5 HOH A 1 1024 1024 HOH HOH . 
EA 5 HOH A 2 1025 1025 HOH HOH . 
EA 5 HOH A 3 1026 1026 HOH HOH . 
EA 5 HOH A 4 1027 1027 HOH HOH . 
EA 5 HOH A 5 1028 1028 HOH HOH . 
EA 5 HOH A 6 1029 1029 HOH HOH . 
EA 5 HOH A 7 1030 1030 HOH HOH . 
EA 5 HOH A 8 1031 1031 HOH HOH . 
EA 5 HOH A 9 1032 1032 HOH HOH . 
EA 5 HOH A 10 1033 1033 HOH HOH . 
EA 5 HOH A 11 1034 1034 HOH HOH . 
EA 5 HOH A 12 1035 1035 HOH HOH . 
EA 5 HOH A 13 1037 1037 HOH HOH . 
EA 5 HOH A 14 1038 1038 HOH HOH . 
EA 5 HOH A 15 1039 1039 HOH HOH . 
EA 5 HOH A 16 1040 1040 HOH HOH . 
EA 5 HOH A 17 1041 1041 HOH HOH . 
EA 5 HOH A 18 1042 1042 HOH HOH . 
EA 5 HOH A 19 1043 1043 HOH HOH . 
EA 5 HOH A 20 1044 1044 HOH HOH . 
EA 5 HOH A 21 1045 1045 HOH HOH . 
EA 5 HOH A 22 1046 1046 HOH HOH . 
EA 5 HOH A 23 1047 1047 HOH HOH . 
EA 5 HOH A 24 1048 1048 HOH HOH . 
EA 5 HOH A 25 1049 1049 HOH HOH . 
EA 5 HOH A 26 1050 1050 HOH HOH . 
EA 5 HOH A 27 1051 1051 HOH HOH . 
EA 5 HOH A 28 1052 1052 HOH HOH . 
EA 5 HOH A 29 1053 1053 HOH HOH . 
EA 5 HOH A 30 1054 1054 HOH HOH . 
EA 5 HOH A 31 1055 1055 HOH HOH . 
EA 5 HOH A 32 1056 1056 HOH HOH . 
EA 5 HOH A 33 1057 1057 HOH HOH . 
EA 5 HOH A 34 1058 1058 HOH HOH . 
EA 5 HOH A 35 1059 1059 HOH HOH . 
EA 5 HOH A 36 1060 1060 HOH HOH . 
EA 5 HOH A 37 1061 1061 HOH HOH . 
EA 5 HOH A 38 1062 1062 HOH HOH . 
EA 5 HOH A 39 1063 1063 HOH HOH . 
EA 5 HOH A 40 1064 1064 HOH HOH . 
EA 5 HOH A 41 1065 1065 HOH HOH . 
EA 5 HOH A 42 1066 1066 HOH HOH . 
EA 5 HOH A 43 1067 1067 HOH HOH . 
EA 5 HOH A 44 1068 1068 HOH HOH . 
EA 5 HOH A 45 1069 1069 HOH HOH . 
EA 5 HOH A 46 1070 1070 HOH HOH . 
EA 5 HOH A 47 1071 1071 HOH HOH . 
EA 5 HOH A 48 1072 1072 HOH HOH . 
EA 5 HOH A 49 1073 1073 HOH HOH . 
EA 5 HOH A 50 1074 1074 HOH HOH . 
EA 5 HOH A 51 1075 1075 HOH HOH . 
EA 5 HOH A 52 1076 1076 HOH HOH . 
EA 5 HOH A 53 1077 1077 HOH HOH . 
EA 5 HOH A 54 1078 1078 HOH HOH . 
EA 5 HOH A 55 1079 1079 HOH HOH . 
EA 5 HOH A 56 1080 1080 HOH HOH . 
EA 5 HOH A 57 1081 1081 HOH HOH . 
EA 5 HOH A 58 1082 1082 HOH HOH . 
EA 5 HOH A 59 1083 1083 HOH HOH . 
EA 5 HOH A 60 1084 1084 HOH HOH . 
EA 5 HOH A 61 1085 1085 HOH HOH . 
EA 5 HOH A 62 1086 1086 HOH HOH . 
EA 5 HOH A 63 1087 1087 HOH HOH . 
EA 5 HOH A 64 1088 1088 HOH HOH . 
EA 5 HOH A 65 1089 1089 HOH HOH . 
EA 5 HOH A 66 1090 1090 HOH HOH . 
EA 5 HOH A 67 1091 1091 HOH HOH . 
EA 5 HOH A 68 1092 1092 HOH HOH . 
EA 5 HOH A 69 1093 1093 HOH HOH . 
EA 5 HOH A 70 1094 1094 HOH HOH . 
EA 5 HOH A 71 1095 1095 HOH HOH . 
EA 5 HOH A 72 1096 1096 HOH HOH . 
EA 5 HOH A 73 1097 1097 HOH HOH . 
EA 5 HOH A 74 1098 1098 HOH HOH . 
EA 5 HOH A 75 1099 1099 HOH HOH . 
EA 5 HOH A 76 1100 1100 HOH HOH . 
EA 5 HOH A 77 1101 1101 HOH HOH . 
EA 5 HOH A 78 1102 1102 HOH HOH . 
EA 5 HOH A 79 1103 1103 HOH HOH . 
EA 5 HOH A 80 1104 1104 HOH HOH . 
EA 5 HOH A 81 1106 1106 HOH HOH . 
EA 5 HOH A 82 1107 1107 HOH HOH . 
EA 5 HOH A 83 1108 1108 HOH HOH . 
EA 5 HOH A 84 1109 1109 HOH HOH . 
EA 5 HOH A 85 1110 1110 HOH HOH . 
EA 5 HOH A 86 1111 1111 HOH HOH . 
EA 5 HOH A 87 1112 1112 HOH HOH . 
EA 5 HOH A 88 1113 1113 HOH HOH . 
EA 5 HOH A 89 1114 1114 HOH HOH . 
EA 5 HOH A 90 1115 1115 HOH HOH . 
EA 5 HOH A 91 1116 1116 HOH HOH . 
EA 5 HOH A 92 1117 1117 HOH HOH . 
EA 5 HOH A 93 1120 1120 HOH HOH . 
EA 5 HOH A 94 1121 1121 HOH HOH . 
EA 5 HOH A 95 1122 1122 HOH HOH . 
EA 5 HOH A 96 1123 1123 HOH HOH . 
EA 5 HOH A 97 1124 1124 HOH HOH . 
EA 5 HOH A 98 1125 1125 HOH HOH . 
EA 5 HOH A 99 1126 1126 HOH HOH . 
EA 5 HOH A 100 1127 1127 HOH HOH . 
EA 5 HOH A 101 1128 1128 HOH HOH . 
EA 5 HOH A 102 1129 1129 HOH HOH . 
EA 5 HOH A 103 1130 1130 HOH HOH . 
EA 5 HOH A 104 1131 1131 HOH HOH . 
EA 5 HOH A 105 1132 1132 HOH HOH . 
EA 5 HOH A 106 1133 1133 HOH HOH . 
EA 5 HOH A 107 1134 1134 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           NA 
_atom_site.label_atom_id         NA 
_atom_site.label_comp_id         NA 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         Z 
_atom_site.label_entity_id       4 
_atom_site.Cartn_x               71.258 
_atom_site.Cartn_y               41.26 
_atom_site.Cartn_z               73.917 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        22.51 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          NA 
_atom_site.auth_comp_id          NA 
_atom_site.auth_seq_id           1019 
_atom_site.auth_asym_id          A 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           20 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           268 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           1 
#