data_3QAG # _model_server_result.job_id '_iJkJ9jfkfew-nTqKbiJhw' _model_server_result.datetime_utc '2024-11-06 07:37:54' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3qag # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":1004}' # _entry.id 3QAG # _exptl.entry_id 3QAG _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3QAG _cell.length_a 53.138 _cell.length_b 53.138 _cell.length_c 352.4 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3QAG _symmetry.cell_setting ? _symmetry.Int_Tables_number 179 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 65 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 10_665 -y+1,-x+1,-z+1/6 0.5 -0.866025 0 -0.866025 -0.5 0 0 0 -1 26.569 46.018858 58.733333 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 32 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 32 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id SG2 _struct_conn.ptnr2_label_comp_id GSH _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id GSH _struct_conn.ptnr2_auth_seq_id 1001 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.061 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 83 n n C1 C2 EDO sing 84 n n C1 H11 EDO sing 85 n n C1 H12 EDO sing 86 n n O1 HO1 EDO sing 87 n n C2 O2 EDO sing 88 n n C2 H21 EDO sing 89 n n C2 H22 EDO sing 90 n n O2 HO2 EDO sing 91 n n # _atom_sites.entry_id 3QAG _atom_sites.fract_transf_matrix[1][1] 0.018819 _atom_sites.fract_transf_matrix[1][2] 0.010865 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.02173 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.002838 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GSH A 1 1001 1001 GSH GTT . C 3 PEG A 1 1002 1002 PEG PEG . D 3 PEG A 1 1003 1003 PEG PEG . E 4 EDO A 1 1004 1004 EDO EDO . F 5 HOH A 1 240 1 HOH HOH . F 5 HOH A 2 241 2 HOH HOH . F 5 HOH A 3 242 3 HOH HOH . F 5 HOH A 4 243 4 HOH HOH . F 5 HOH A 5 244 5 HOH HOH . F 5 HOH A 6 245 6 HOH HOH . F 5 HOH A 7 246 7 HOH HOH . F 5 HOH A 8 247 8 HOH HOH . F 5 HOH A 9 248 10 HOH HOH . F 5 HOH A 10 249 11 HOH HOH . F 5 HOH A 11 250 13 HOH HOH . F 5 HOH A 12 251 14 HOH HOH . F 5 HOH A 13 252 15 HOH HOH . F 5 HOH A 14 253 16 HOH HOH . F 5 HOH A 15 254 17 HOH HOH . F 5 HOH A 16 255 18 HOH HOH . F 5 HOH A 17 256 19 HOH HOH . F 5 HOH A 18 257 20 HOH HOH . F 5 HOH A 19 258 21 HOH HOH . F 5 HOH A 20 259 22 HOH HOH . F 5 HOH A 21 260 23 HOH HOH . F 5 HOH A 22 261 24 HOH HOH . F 5 HOH A 23 262 25 HOH HOH . F 5 HOH A 24 263 26 HOH HOH . F 5 HOH A 25 264 27 HOH HOH . F 5 HOH A 26 265 28 HOH HOH . F 5 HOH A 27 266 29 HOH HOH . F 5 HOH A 28 267 30 HOH HOH . F 5 HOH A 29 268 31 HOH HOH . F 5 HOH A 30 269 32 HOH HOH . F 5 HOH A 31 270 33 HOH HOH . F 5 HOH A 32 271 34 HOH HOH . F 5 HOH A 33 272 35 HOH HOH . F 5 HOH A 34 273 36 HOH HOH . F 5 HOH A 35 274 37 HOH HOH . F 5 HOH A 36 275 38 HOH HOH . F 5 HOH A 37 276 39 HOH HOH . F 5 HOH A 38 277 40 HOH HOH . F 5 HOH A 39 278 41 HOH HOH . F 5 HOH A 40 279 42 HOH HOH . F 5 HOH A 41 280 43 HOH HOH . F 5 HOH A 42 281 44 HOH HOH . F 5 HOH A 43 282 45 HOH HOH . F 5 HOH A 44 283 46 HOH HOH . F 5 HOH A 45 284 47 HOH HOH . F 5 HOH A 46 285 48 HOH HOH . F 5 HOH A 47 286 49 HOH HOH . F 5 HOH A 48 287 50 HOH HOH . F 5 HOH A 49 288 51 HOH HOH . F 5 HOH A 50 289 52 HOH HOH . F 5 HOH A 51 290 53 HOH HOH . F 5 HOH A 52 291 54 HOH HOH . F 5 HOH A 53 292 55 HOH HOH . F 5 HOH A 54 293 56 HOH HOH . F 5 HOH A 55 294 57 HOH HOH . F 5 HOH A 56 295 58 HOH HOH . F 5 HOH A 57 296 59 HOH HOH . F 5 HOH A 58 297 60 HOH HOH . F 5 HOH A 59 298 61 HOH HOH . F 5 HOH A 60 299 62 HOH HOH . F 5 HOH A 61 300 63 HOH HOH . F 5 HOH A 62 301 64 HOH HOH . F 5 HOH A 63 302 65 HOH HOH . F 5 HOH A 64 303 66 HOH HOH . F 5 HOH A 65 304 67 HOH HOH . F 5 HOH A 66 305 68 HOH HOH . F 5 HOH A 67 306 69 HOH HOH . F 5 HOH A 68 307 71 HOH HOH . F 5 HOH A 69 308 72 HOH HOH . F 5 HOH A 70 309 73 HOH HOH . F 5 HOH A 71 310 74 HOH HOH . F 5 HOH A 72 311 75 HOH HOH . F 5 HOH A 73 312 76 HOH HOH . F 5 HOH A 74 313 77 HOH HOH . F 5 HOH A 75 314 78 HOH HOH . F 5 HOH A 76 315 79 HOH HOH . F 5 HOH A 77 316 80 HOH HOH . F 5 HOH A 78 317 81 HOH HOH . F 5 HOH A 79 318 82 HOH HOH . F 5 HOH A 80 319 84 HOH HOH . F 5 HOH A 81 320 85 HOH HOH . F 5 HOH A 82 321 86 HOH HOH . F 5 HOH A 83 322 87 HOH HOH . F 5 HOH A 84 323 88 HOH HOH . F 5 HOH A 85 324 90 HOH HOH . F 5 HOH A 86 325 91 HOH HOH . F 5 HOH A 87 326 94 HOH HOH . F 5 HOH A 88 327 95 HOH HOH . F 5 HOH A 89 328 96 HOH HOH . F 5 HOH A 90 329 97 HOH HOH . F 5 HOH A 91 330 98 HOH HOH . F 5 HOH A 92 331 99 HOH HOH . F 5 HOH A 93 332 100 HOH HOH . F 5 HOH A 94 333 101 HOH HOH . F 5 HOH A 95 334 102 HOH HOH . F 5 HOH A 96 335 104 HOH HOH . F 5 HOH A 97 336 105 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . E 4 2.365 23.503 12 1 57.46 ? C1 EDO 1004 A 1 HETATM 2 O O1 EDO . . . E 4 1.812 24.3 10.948 1 58.51 ? O1 EDO 1004 A 1 HETATM 3 C C2 EDO . . . E 4 1.404 22.359 12.301 1 58.03 ? C2 EDO 1004 A 1 HETATM 4 O O2 EDO . . . E 4 2.154 21.155 12.501 1 57.3 ? O2 EDO 1004 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 228 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 4 #