data_3QAI
#
_model_server_result.job_id            lxLYBXQBrNJUz5HOFdfKQA 
_model_server_result.datetime_utc      '2024-11-24 14:01:26' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3qai 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"G","auth_seq_id":303}' 
#
_entry.id    3QAI 
#
_exptl.entry_id    3QAI 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              434.56 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            N~8~-(cyclopropylmethyl)-2-(2,6-diazaspiro[3.3]hept-2-yl)-N~4~-[2-(methylsulfanyl)phenyl]pyrimido[5,4-d]pyrimidine-4,8-diamine 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            3QAI 
_cell.length_a            83.132 
_cell.length_b            86.295 
_cell.length_c            136.598 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3QAI 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 D N N 
? 3 G N N 
#
_chem_comp.formula           'C22 H26 N8 S' 
_chem_comp.formula_weight    434.56 
_chem_comp.id                XNN 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              N~8~-(cyclopropylmethyl)-2-(2,6-diazaspiro[3.3]hept-2-yl)-N~4~-[2-(methylsulfanyl)phenyl]pyrimido[5,4-d]pyrimidine-4,8-diamine 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
S02 C01 XNN sing 380 n n 
C01 H01 XNN sing 381 n n 
C01 H01A XNN sing 382 n n 
C01 H01B XNN sing 383 n n 
C03 S02 XNN sing 384 n n 
C08 C03 XNN doub 385 n y 
C03 C04 XNN sing 386 n y 
C05 C04 XNN doub 387 n y 
C04 H04 XNN sing 388 n n 
C06 C05 XNN sing 389 n y 
C05 H05 XNN sing 390 n n 
C07 C06 XNN doub 391 n y 
C06 H06 XNN sing 392 n n 
C07 C08 XNN sing 393 n y 
C07 H07 XNN sing 394 n n 
N09 C08 XNN sing 395 n n 
C10 N09 XNN sing 396 n n 
N09 HN09 XNN sing 397 n n 
N11 C10 XNN doub 398 n y 
C19 C10 XNN sing 399 n y 
C12 N11 XNN sing 400 n y 
N25 C12 XNN sing 401 n n 
N13 C12 XNN doub 402 n y 
N13 C14 XNN sing 403 n y 
C15 C14 XNN doub 404 n y 
C14 C19 XNN sing 405 n y 
N20 C15 XNN sing 406 n n 
C15 N16 XNN sing 407 n y 
N16 C17 XNN doub 408 n y 
C17 N18 XNN sing 409 n y 
C17 H17 XNN sing 410 n n 
C19 N18 XNN doub 411 n y 
C21 N20 XNN sing 412 n n 
N20 HN20 XNN sing 413 n n 
C21 C22 XNN sing 414 n n 
C21 H21 XNN sing 415 n n 
C21 H21A XNN sing 416 n n 
C23 C22 XNN sing 417 n n 
C24 C22 XNN sing 418 n n 
C22 H22 XNN sing 419 n n 
C23 C24 XNN sing 420 n n 
C23 H23 XNN sing 421 n n 
C23 H23A XNN sing 422 n n 
C24 H24 XNN sing 423 n n 
C24 H24A XNN sing 424 n n 
C26 N25 XNN sing 425 n n 
N25 C31 XNN sing 426 n n 
C27 C26 XNN sing 427 n n 
C26 H26 XNN sing 428 n n 
C26 H26A XNN sing 429 n n 
C28 C27 XNN sing 430 n n 
C30 C27 XNN sing 431 n n 
C27 C31 XNN sing 432 n n 
C28 N29 XNN sing 433 n n 
C28 H28 XNN sing 434 n n 
C28 H28A XNN sing 435 n n 
N29 C30 XNN sing 436 n n 
N29 HN29 XNN sing 437 n n 
C30 H30 XNN sing 438 n n 
C30 H30A XNN sing 439 n n 
C31 H31 XNN sing 440 n n 
C31 H31A XNN sing 441 n n 
#
_atom_sites.entry_id                     3QAI 
_atom_sites.fract_transf_matrix[1][1]    0.012029 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.011588 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007321 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 SO4 A 1 301 1 SO4 SO4 . 
D 3 XNN A 1 302 1 XNN XNN . 
E 2 SO4 B 1 301 2 SO4 SO4 . 
F 2 SO4 B 1 302 3 SO4 SO4 . 
G 3 XNN B 1 303 2 XNN XNN . 
H 4 HOH A 1 401 5 HOH HOH . 
H 4 HOH A 2 402 7 HOH HOH . 
H 4 HOH A 3 403 8 HOH HOH . 
H 4 HOH A 4 404 9 HOH HOH . 
H 4 HOH A 5 405 11 HOH HOH . 
H 4 HOH A 6 406 16 HOH HOH . 
H 4 HOH A 7 407 19 HOH HOH . 
H 4 HOH A 8 408 21 HOH HOH . 
H 4 HOH A 9 409 23 HOH HOH . 
I 4 HOH B 1 401 1 HOH HOH . 
I 4 HOH B 2 402 2 HOH HOH . 
I 4 HOH B 3 403 3 HOH HOH . 
I 4 HOH B 4 404 4 HOH HOH . 
I 4 HOH B 5 405 6 HOH HOH . 
I 4 HOH B 6 406 10 HOH HOH . 
I 4 HOH B 7 407 12 HOH HOH . 
I 4 HOH B 8 408 13 HOH HOH . 
I 4 HOH B 9 409 14 HOH HOH . 
I 4 HOH B 10 410 15 HOH HOH . 
I 4 HOH B 11 411 17 HOH HOH . 
I 4 HOH B 12 412 18 HOH HOH . 
I 4 HOH B 13 413 20 HOH HOH . 
I 4 HOH B 14 414 22 HOH HOH . 
I 4 HOH B 15 415 24 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C01 XNN . . . G 3 -25.557 24.009 59.593 1 60.23 ? C01 XNN 303 B 1 
HETATM 2 S S02 XNN . . . G 3 -24.532 24.695 58.232 1 61.11 ? S02 XNN 303 B 1 
HETATM 3 C C03 XNN . . . G 3 -23.934 23.376 57.176 1 63.91 ? C03 XNN 303 B 1 
HETATM 4 C C04 XNN . . . G 3 -23.085 22.431 57.742 1 60.87 ? C04 XNN 303 B 1 
HETATM 5 C C05 XNN . . . G 3 -22.587 21.359 56.995 1 60.84 ? C05 XNN 303 B 1 
HETATM 6 C C06 XNN . . . G 3 -22.974 21.264 55.668 1 54.73 ? C06 XNN 303 B 1 
HETATM 7 C C07 XNN . . . G 3 -23.828 22.207 55.077 1 60 ? C07 XNN 303 B 1 
HETATM 8 C C08 XNN . . . G 3 -24.361 23.3 55.793 1 68.72 ? C08 XNN 303 B 1 
HETATM 9 N N09 XNN . . . G 3 -25.253 24.317 55.276 1 67.91 ? N09 XNN 303 B 1 
HETATM 10 C C10 XNN . . . G 3 -26.199 24.023 54.187 1 71.72 ? C10 XNN 303 B 1 
HETATM 11 N N11 XNN . . . G 3 -26.152 22.879 53.477 1 71.94 ? N11 XNN 303 B 1 
HETATM 12 C C12 XNN . . . G 3 -27.105 22.648 52.421 1 76.49 ? C12 XNN 303 B 1 
HETATM 13 N N13 XNN . . . G 3 -28.076 23.555 52.08 1 78.35 ? N13 XNN 303 B 1 
HETATM 14 C C14 XNN . . . G 3 -28.139 24.759 52.807 1 75.07 ? C14 XNN 303 B 1 
HETATM 15 C C15 XNN . . . G 3 -29.18 25.838 52.528 1 80.28 ? C15 XNN 303 B 1 
HETATM 16 N N16 XNN . . . G 3 -29.157 26.966 53.287 1 84.51 ? N16 XNN 303 B 1 
HETATM 17 C C17 XNN . . . G 3 -28.189 27.064 54.277 1 79.16 ? C17 XNN 303 B 1 
HETATM 18 N N18 XNN . . . G 3 -27.235 26.191 54.609 1 70.89 ? N18 XNN 303 B 1 
HETATM 19 C C19 XNN . . . G 3 -27.228 25.024 53.856 1 78.68 ? C19 XNN 303 B 1 
HETATM 20 N N20 XNN . . . G 3 -30.139 25.721 51.537 1 84.15 ? N20 XNN 303 B 1 
HETATM 21 C C21 XNN . . . G 3 -30.343 24.581 50.6 1 88.84 ? C21 XNN 303 B 1 
HETATM 22 C C22 XNN . . . G 3 -31.084 23.309 50.926 1 93.41 ? C22 XNN 303 B 1 
HETATM 23 C C23 XNN . . . G 3 -30.932 22.068 50.03 1 88.54 ? C23 XNN 303 B 1 
HETATM 24 C C24 XNN . . . G 3 -32.246 22.825 50.032 1 101.86 ? C24 XNN 303 B 1 
HETATM 25 N N25 XNN . . . G 3 -26.975 21.409 51.671 1 78.15 ? N25 XNN 303 B 1 
HETATM 26 C C26 XNN . . . G 3 -27.753 20.687 50.566 1 86.5 ? C26 XNN 303 B 1 
HETATM 27 C C27 XNN . . . G 3 -26.641 19.59 50.511 1 93.94 ? C27 XNN 303 B 1 
HETATM 28 C C28 XNN . . . G 3 -26.001 19.521 49.077 1 93.93 ? C28 XNN 303 B 1 
HETATM 29 N N29 XNN . . . G 3 -25.905 18.023 49.139 1 102.06 ? N29 XNN 303 B 1 
HETATM 30 C C30 XNN . . . G 3 -26.592 18.02 50.484 1 99.24 ? C30 XNN 303 B 1 
HETATM 31 C C31 XNN . . . G 3 -26.076 20.198 51.836 1 76.86 ? C31 XNN 303 B 1 
#
_model_server_stats.io_time_ms              5 
_model_server_stats.parse_time_ms           5 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           221 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           31 
#