data_3QAR # _model_server_result.job_id SbbbKpbby2UE_Kvn7piLjQ _model_server_result.datetime_utc '2024-12-21 16:38:51' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3qar # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":1103}' # _entry.id 3QAR # _exptl.entry_id 3QAR _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 307.313 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1-(4-amino-6-methyl-1,3,5-triazin-2-yl)-N-(1H-pyrazol-3-yl)-1H-benzimidazol-2-amine _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 95.45 _cell.angle_gamma 90 _cell.entry_id 3QAR _cell.length_a 143.838 _cell.length_b 68.015 _cell.length_c 106.046 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3QAR _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C14 H13 N9' _chem_comp.formula_weight 307.313 _chem_comp.id QAR _chem_comp.mon_nstd_flag . _chem_comp.name 1-(4-amino-6-methyl-1,3,5-triazin-2-yl)-N-(1H-pyrazol-3-yl)-1H-benzimidazol-2-amine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 1-(4-amino-6-methyl-1,3,5-triazin-2-yl)-N-(1H-pyrazol-3-yl)-1H-benzo[d]imidazol-2-amine # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 N1 QAR doub 277 n y C3 N1 QAR sing 278 n y C2 N3 QAR sing 279 n y N3 C3 QAR doub 280 n y C5 C4 QAR doub 281 n y C4 C7 QAR sing 282 n y C4 N4 QAR sing 283 n y C10 C5 QAR sing 284 n y C5 N5 QAR sing 285 n y N5 C6 QAR doub 286 n y C6 N6 QAR sing 287 n n C6 N4 QAR sing 288 n y C8 C7 QAR doub 289 n y C7 H7 QAR sing 290 n n C9 C8 QAR sing 291 n y C8 H8 QAR sing 292 n n C10 C9 QAR doub 293 n y C10 H10 QAR sing 294 n n C12 C13 QAR sing 295 n y C14 C13 QAR doub 296 n y C13 H13 QAR sing 297 n n N8 C14 QAR sing 298 n y C14 H14 QAR sing 299 n n N9 N8 QAR sing 300 n y N9 C12 QAR doub 301 n y C12 N6 QAR sing 302 n n N6 HN6 QAR sing 303 n n C9 H9 QAR sing 304 n n N4 C2 QAR sing 305 n y C2 N2 QAR doub 306 n y N2 C1 QAR sing 307 n y C3 C11 QAR sing 308 n n C11 H11 QAR sing 309 n n C11 H11A QAR sing 310 n n C11 H11B QAR sing 311 n n C1 N7 QAR sing 312 n n N7 HN7 QAR sing 313 n n N7 HN7A QAR sing 314 n n N8 HN8 QAR sing 315 n n # _atom_sites.entry_id 3QAR _atom_sites.fract_transf_matrix[1][1] 0.006952 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000663 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014703 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009473 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SO4 A 1 1 1 SO4 SO4 . C 2 SO4 A 1 3 3 SO4 SO4 . D 2 SO4 A 1 4 4 SO4 SO4 . E 3 QAR A 1 1103 1 QAR QAR . F 4 HOH A 1 2 2 HOH HOH . F 4 HOH A 2 5 5 HOH HOH . F 4 HOH A 3 6 6 HOH HOH . F 4 HOH A 4 7 7 HOH HOH . F 4 HOH A 5 8 8 HOH HOH . F 4 HOH A 6 9 9 HOH HOH . F 4 HOH A 7 10 10 HOH HOH . F 4 HOH A 8 11 11 HOH HOH . F 4 HOH A 9 12 12 HOH HOH . F 4 HOH A 10 13 13 HOH HOH . F 4 HOH A 11 14 14 HOH HOH . F 4 HOH A 12 15 15 HOH HOH . F 4 HOH A 13 16 16 HOH HOH . F 4 HOH A 14 17 17 HOH HOH . F 4 HOH A 15 18 18 HOH HOH . F 4 HOH A 16 19 19 HOH HOH . F 4 HOH A 17 20 20 HOH HOH . F 4 HOH A 18 21 21 HOH HOH . F 4 HOH A 19 1104 1 HOH HOH . F 4 HOH A 20 1105 3 HOH HOH . F 4 HOH A 21 1106 4 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 QAR . . . E 3 19.68 12.281 24.259 1 59.69 ? N1 QAR 1103 A 1 HETATM 2 N N3 QAR . . . E 3 21.733 12.974 23.402 1 59.26 ? N3 QAR 1103 A 1 HETATM 3 C C4 QAR . . . E 3 21.551 15.945 21.452 1 60.73 ? C4 QAR 1103 A 1 HETATM 4 C C5 QAR . . . E 3 22.637 16.397 20.701 1 60.12 ? C5 QAR 1103 A 1 HETATM 5 C C6 QAR . . . E 3 23.124 14.451 21.478 1 60.6 ? C6 QAR 1103 A 1 HETATM 6 C C7 QAR . . . E 3 20.41 16.749 21.58 1 61.05 ? C7 QAR 1103 A 1 HETATM 7 C C8 QAR . . . E 3 20.361 18.001 20.96 1 60.94 ? C8 QAR 1103 A 1 HETATM 8 C C10 QAR . . . E 3 22.592 17.65 20.084 1 60.65 ? C10 QAR 1103 A 1 HETATM 9 C C13 QAR . . . E 3 25.704 11.997 22.102 1 59.82 ? C13 QAR 1103 A 1 HETATM 10 C C14 QAR . . . E 3 26.93 12.011 21.591 1 59.09 ? C14 QAR 1103 A 1 HETATM 11 N N8 QAR . . . E 3 26.994 13.017 20.718 1 58.96 ? N8 QAR 1103 A 1 HETATM 12 N N9 QAR . . . E 3 25.904 13.598 20.67 1 60.1 ? N9 QAR 1103 A 1 HETATM 13 C C12 QAR . . . E 3 25.065 13.004 21.516 1 60.29 ? C12 QAR 1103 A 1 HETATM 14 N N6 QAR . . . E 3 23.777 13.31 21.759 1 60.65 ? N6 QAR 1103 A 1 HETATM 15 N N5 QAR . . . E 3 23.579 15.457 20.738 1 60.34 ? N5 QAR 1103 A 1 HETATM 16 C C9 QAR . . . E 3 21.456 18.452 20.211 1 60.85 ? C9 QAR 1103 A 1 HETATM 17 N N4 QAR . . . E 3 21.891 14.74 21.913 1 60.43 ? N4 QAR 1103 A 1 HETATM 18 C C2 QAR . . . E 3 21.138 13.939 22.685 1 60.03 ? C2 QAR 1103 A 1 HETATM 19 N N2 QAR . . . E 3 19.801 14.072 22.765 1 59.31 ? N2 QAR 1103 A 1 HETATM 20 C C3 QAR . . . E 3 21.008 12.155 24.179 1 59.48 ? C3 QAR 1103 A 1 HETATM 21 C C11 QAR . . . E 3 21.699 11.071 24.981 1 59.62 ? C11 QAR 1103 A 1 HETATM 22 C C1 QAR . . . E 3 19.079 13.246 23.551 1 59.61 ? C1 QAR 1103 A 1 HETATM 23 N N7 QAR . . . E 3 17.764 13.365 23.638 1 59.25 ? N7 QAR 1103 A 1 # _model_server_stats.io_time_ms 113 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 321 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 23 #