data_3QBC
#
_model_server_result.job_id            RRw7O-PCDG5a-DUdUCsHQg 
_model_server_result.datetime_utc      '2024-11-08 19:55:55' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3qbc 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":163}' 
#
_entry.id    3QBC 
#
_exptl.entry_id    3QBC 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              183.191 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            2-amino-8-sulfanyl-1,9-dihydro-6H-purin-6-one 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          100.17 
_cell.angle_gamma         90 
_cell.entry_id            3QBC 
_cell.length_a            36.79 
_cell.length_b            76.566 
_cell.length_c            51.522 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3QBC 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
PISA dimeric 2 software_defined_assembly 3 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,E 1 1 
B,D,F 2 1 
A,B,C,D,E,F 3 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
#
_chem_comp.formula           'C5 H5 N5 O S' 
_chem_comp.formula_weight    183.191 
_chem_comp.id                B55 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              2-amino-8-sulfanyl-1,9-dihydro-6H-purin-6-one 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     2-amino-8-mercapto-1H-purin-6(9H)-one 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O1 C5 B55 doub 70 n n 
C5 C2 B55 sing 71 n n 
C5 N4 B55 sing 72 n n 
C2 N1 B55 sing 73 n y 
C2 C3 B55 doub 74 n y 
N1 C1 B55 doub 75 n y 
N4 C4 B55 sing 76 n n 
C4 N3 B55 sing 77 n n 
C4 N2 B55 doub 78 n n 
N2 C3 B55 sing 79 n n 
C3 N5 B55 sing 80 n y 
N5 C1 B55 sing 81 n y 
C1 S1 B55 sing 82 n n 
N4 HN4 B55 sing 83 n n 
N3 HN3 B55 sing 84 n n 
N3 HN3A B55 sing 85 n n 
N5 HN5 B55 sing 86 n n 
S1 HS1 B55 sing 87 n n 
#
_atom_sites.entry_id                     3QBC 
_atom_sites.fract_transf_matrix[1][1]    0.027182 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.004877 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.013061 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.019719 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 B55 A 1 159 159 B55 SAN . 
D 2 B55 B 1 163 163 B55 SAN . 
E 3 HOH A 1 160 2 HOH HOH . 
E 3 HOH A 2 161 3 HOH HOH . 
E 3 HOH A 3 162 7 HOH HOH . 
E 3 HOH A 4 163 163 HOH HOH . 
E 3 HOH A 5 164 164 HOH HOH . 
E 3 HOH A 6 165 8 HOH HOH . 
E 3 HOH A 7 166 166 HOH HOH . 
E 3 HOH A 8 167 167 HOH HOH . 
E 3 HOH A 9 168 9 HOH HOH . 
E 3 HOH A 10 169 10 HOH HOH . 
E 3 HOH A 11 170 13 HOH HOH . 
E 3 HOH A 12 171 171 HOH HOH . 
E 3 HOH A 13 172 172 HOH HOH . 
E 3 HOH A 14 173 14 HOH HOH . 
E 3 HOH A 15 174 15 HOH HOH . 
E 3 HOH A 16 175 16 HOH HOH . 
E 3 HOH A 17 176 18 HOH HOH . 
E 3 HOH A 18 177 177 HOH HOH . 
E 3 HOH A 19 178 178 HOH HOH . 
E 3 HOH A 20 179 179 HOH HOH . 
E 3 HOH A 21 180 180 HOH HOH . 
E 3 HOH A 22 181 181 HOH HOH . 
E 3 HOH A 23 182 19 HOH HOH . 
E 3 HOH A 24 183 183 HOH HOH . 
E 3 HOH A 25 184 20 HOH HOH . 
E 3 HOH A 26 185 21 HOH HOH . 
E 3 HOH A 27 186 22 HOH HOH . 
E 3 HOH A 28 187 25 HOH HOH . 
E 3 HOH A 29 188 28 HOH HOH . 
E 3 HOH A 30 189 189 HOH HOH . 
E 3 HOH A 31 190 190 HOH HOH . 
E 3 HOH A 32 191 29 HOH HOH . 
E 3 HOH A 33 192 192 HOH HOH . 
E 3 HOH A 34 193 30 HOH HOH . 
E 3 HOH A 35 194 31 HOH HOH . 
E 3 HOH A 36 195 195 HOH HOH . 
E 3 HOH A 37 196 196 HOH HOH . 
E 3 HOH A 38 197 197 HOH HOH . 
E 3 HOH A 39 198 32 HOH HOH . 
E 3 HOH A 40 199 199 HOH HOH . 
E 3 HOH A 41 200 37 HOH HOH . 
E 3 HOH A 42 201 39 HOH HOH . 
E 3 HOH A 43 202 44 HOH HOH . 
E 3 HOH A 44 203 46 HOH HOH . 
E 3 HOH A 45 204 204 HOH HOH . 
E 3 HOH A 46 205 205 HOH HOH . 
E 3 HOH A 47 206 206 HOH HOH . 
E 3 HOH A 48 207 207 HOH HOH . 
E 3 HOH A 49 208 208 HOH HOH . 
E 3 HOH A 50 209 209 HOH HOH . 
E 3 HOH A 51 210 210 HOH HOH . 
E 3 HOH A 52 211 211 HOH HOH . 
E 3 HOH A 53 213 213 HOH HOH . 
E 3 HOH A 54 214 48 HOH HOH . 
E 3 HOH A 55 215 49 HOH HOH . 
E 3 HOH A 56 216 50 HOH HOH . 
E 3 HOH A 57 217 52 HOH HOH . 
E 3 HOH A 58 218 54 HOH HOH . 
E 3 HOH A 59 219 56 HOH HOH . 
E 3 HOH A 60 220 220 HOH HOH . 
E 3 HOH A 61 221 58 HOH HOH . 
E 3 HOH A 62 222 61 HOH HOH . 
E 3 HOH A 63 223 223 HOH HOH . 
E 3 HOH A 64 224 224 HOH HOH . 
E 3 HOH A 65 225 63 HOH HOH . 
E 3 HOH A 66 226 226 HOH HOH . 
E 3 HOH A 67 227 64 HOH HOH . 
E 3 HOH A 68 228 65 HOH HOH . 
E 3 HOH A 69 229 66 HOH HOH . 
E 3 HOH A 70 230 69 HOH HOH . 
E 3 HOH A 71 231 231 HOH HOH . 
E 3 HOH A 72 232 232 HOH HOH . 
E 3 HOH A 73 233 233 HOH HOH . 
E 3 HOH A 74 234 234 HOH HOH . 
E 3 HOH A 75 235 235 HOH HOH . 
E 3 HOH A 76 236 71 HOH HOH . 
E 3 HOH A 77 237 72 HOH HOH . 
E 3 HOH A 78 238 238 HOH HOH . 
E 3 HOH A 79 239 74 HOH HOH . 
E 3 HOH A 80 240 77 HOH HOH . 
E 3 HOH A 81 241 78 HOH HOH . 
E 3 HOH A 82 242 79 HOH HOH . 
E 3 HOH A 83 243 82 HOH HOH . 
E 3 HOH A 84 244 244 HOH HOH . 
E 3 HOH A 85 245 245 HOH HOH . 
E 3 HOH A 86 246 88 HOH HOH . 
E 3 HOH A 87 247 89 HOH HOH . 
E 3 HOH A 88 248 248 HOH HOH . 
E 3 HOH A 89 249 249 HOH HOH . 
E 3 HOH A 90 250 250 HOH HOH . 
E 3 HOH A 91 251 90 HOH HOH . 
E 3 HOH A 92 252 252 HOH HOH . 
E 3 HOH A 93 253 253 HOH HOH . 
E 3 HOH A 94 254 254 HOH HOH . 
E 3 HOH A 95 255 98 HOH HOH . 
E 3 HOH A 96 256 99 HOH HOH . 
E 3 HOH A 97 257 100 HOH HOH . 
E 3 HOH A 98 258 104 HOH HOH . 
E 3 HOH A 99 259 105 HOH HOH . 
E 3 HOH A 100 260 107 HOH HOH . 
E 3 HOH A 101 261 108 HOH HOH . 
E 3 HOH A 102 262 110 HOH HOH . 
E 3 HOH A 103 263 111 HOH HOH . 
E 3 HOH A 104 264 112 HOH HOH . 
E 3 HOH A 105 265 115 HOH HOH . 
E 3 HOH A 106 266 116 HOH HOH . 
E 3 HOH A 107 267 117 HOH HOH . 
E 3 HOH A 108 268 118 HOH HOH . 
E 3 HOH A 109 269 120 HOH HOH . 
E 3 HOH A 110 270 122 HOH HOH . 
E 3 HOH A 111 271 125 HOH HOH . 
E 3 HOH A 112 272 130 HOH HOH . 
E 3 HOH A 113 273 131 HOH HOH . 
E 3 HOH A 114 274 134 HOH HOH . 
E 3 HOH A 115 275 137 HOH HOH . 
E 3 HOH A 116 276 139 HOH HOH . 
E 3 HOH A 117 277 140 HOH HOH . 
E 3 HOH A 118 278 141 HOH HOH . 
E 3 HOH A 119 279 142 HOH HOH . 
E 3 HOH A 120 280 143 HOH HOH . 
E 3 HOH A 121 281 144 HOH HOH . 
E 3 HOH A 122 282 146 HOH HOH . 
E 3 HOH A 123 283 150 HOH HOH . 
E 3 HOH A 124 284 151 HOH HOH . 
E 3 HOH A 125 285 156 HOH HOH . 
E 3 HOH A 126 286 158 HOH HOH . 
E 3 HOH A 127 287 159 HOH HOH . 
F 3 HOH B 1 159 1 HOH HOH . 
F 3 HOH B 2 160 160 HOH HOH . 
F 3 HOH B 3 161 161 HOH HOH . 
F 3 HOH B 4 162 162 HOH HOH . 
F 3 HOH B 5 164 4 HOH HOH . 
F 3 HOH B 6 165 165 HOH HOH . 
F 3 HOH B 7 166 5 HOH HOH . 
F 3 HOH B 8 167 6 HOH HOH . 
F 3 HOH B 9 168 168 HOH HOH . 
F 3 HOH B 10 169 169 HOH HOH . 
F 3 HOH B 11 170 170 HOH HOH . 
F 3 HOH B 12 171 11 HOH HOH . 
F 3 HOH B 13 172 12 HOH HOH . 
F 3 HOH B 14 173 173 HOH HOH . 
F 3 HOH B 15 174 174 HOH HOH . 
F 3 HOH B 16 175 175 HOH HOH . 
F 3 HOH B 17 176 176 HOH HOH . 
F 3 HOH B 18 177 17 HOH HOH . 
F 3 HOH B 19 178 23 HOH HOH . 
F 3 HOH B 20 179 24 HOH HOH . 
F 3 HOH B 21 180 26 HOH HOH . 
F 3 HOH B 22 181 27 HOH HOH . 
F 3 HOH B 23 182 182 HOH HOH . 
F 3 HOH B 24 183 33 HOH HOH . 
F 3 HOH B 25 184 184 HOH HOH . 
F 3 HOH B 26 185 185 HOH HOH . 
F 3 HOH B 27 186 186 HOH HOH . 
F 3 HOH B 28 187 187 HOH HOH . 
F 3 HOH B 29 188 188 HOH HOH . 
F 3 HOH B 30 189 34 HOH HOH . 
F 3 HOH B 31 190 35 HOH HOH . 
F 3 HOH B 32 191 191 HOH HOH . 
F 3 HOH B 33 192 36 HOH HOH . 
F 3 HOH B 34 193 193 HOH HOH . 
F 3 HOH B 35 194 194 HOH HOH . 
F 3 HOH B 36 195 38 HOH HOH . 
F 3 HOH B 37 196 40 HOH HOH . 
F 3 HOH B 38 197 41 HOH HOH . 
F 3 HOH B 39 198 198 HOH HOH . 
F 3 HOH B 40 199 42 HOH HOH . 
F 3 HOH B 41 200 200 HOH HOH . 
F 3 HOH B 42 201 201 HOH HOH . 
F 3 HOH B 43 202 202 HOH HOH . 
F 3 HOH B 44 203 203 HOH HOH . 
F 3 HOH B 45 204 43 HOH HOH . 
F 3 HOH B 46 205 45 HOH HOH . 
F 3 HOH B 47 206 47 HOH HOH . 
F 3 HOH B 48 207 51 HOH HOH . 
F 3 HOH B 49 208 53 HOH HOH . 
F 3 HOH B 50 209 55 HOH HOH . 
F 3 HOH B 51 210 57 HOH HOH . 
F 3 HOH B 52 211 59 HOH HOH . 
F 3 HOH B 53 212 212 HOH HOH . 
F 3 HOH B 54 213 62 HOH HOH . 
F 3 HOH B 55 214 214 HOH HOH . 
F 3 HOH B 56 215 215 HOH HOH . 
F 3 HOH B 57 216 216 HOH HOH . 
F 3 HOH B 58 217 217 HOH HOH . 
F 3 HOH B 59 218 218 HOH HOH . 
F 3 HOH B 60 219 219 HOH HOH . 
F 3 HOH B 61 220 67 HOH HOH . 
F 3 HOH B 62 221 221 HOH HOH . 
F 3 HOH B 63 222 222 HOH HOH . 
F 3 HOH B 64 223 68 HOH HOH . 
F 3 HOH B 65 224 70 HOH HOH . 
F 3 HOH B 66 225 225 HOH HOH . 
F 3 HOH B 67 226 73 HOH HOH . 
F 3 HOH B 68 227 227 HOH HOH . 
F 3 HOH B 69 228 228 HOH HOH . 
F 3 HOH B 70 229 229 HOH HOH . 
F 3 HOH B 71 230 230 HOH HOH . 
F 3 HOH B 72 231 75 HOH HOH . 
F 3 HOH B 73 232 76 HOH HOH . 
F 3 HOH B 74 233 80 HOH HOH . 
F 3 HOH B 75 234 81 HOH HOH . 
F 3 HOH B 76 235 83 HOH HOH . 
F 3 HOH B 77 236 236 HOH HOH . 
F 3 HOH B 78 237 237 HOH HOH . 
F 3 HOH B 79 238 84 HOH HOH . 
F 3 HOH B 80 239 239 HOH HOH . 
F 3 HOH B 81 240 240 HOH HOH . 
F 3 HOH B 82 241 241 HOH HOH . 
F 3 HOH B 83 242 242 HOH HOH . 
F 3 HOH B 84 243 243 HOH HOH . 
F 3 HOH B 85 244 85 HOH HOH . 
F 3 HOH B 86 245 86 HOH HOH . 
F 3 HOH B 87 246 246 HOH HOH . 
F 3 HOH B 88 247 247 HOH HOH . 
F 3 HOH B 89 248 87 HOH HOH . 
F 3 HOH B 90 249 91 HOH HOH . 
F 3 HOH B 91 250 92 HOH HOH . 
F 3 HOH B 92 251 251 HOH HOH . 
F 3 HOH B 93 252 93 HOH HOH . 
F 3 HOH B 94 253 94 HOH HOH . 
F 3 HOH B 95 254 95 HOH HOH . 
F 3 HOH B 96 255 96 HOH HOH . 
F 3 HOH B 97 256 97 HOH HOH . 
F 3 HOH B 98 257 101 HOH HOH . 
F 3 HOH B 99 258 102 HOH HOH . 
F 3 HOH B 100 259 103 HOH HOH . 
F 3 HOH B 101 260 106 HOH HOH . 
F 3 HOH B 102 261 109 HOH HOH . 
F 3 HOH B 103 262 113 HOH HOH . 
F 3 HOH B 104 263 114 HOH HOH . 
F 3 HOH B 105 264 119 HOH HOH . 
F 3 HOH B 106 265 121 HOH HOH . 
F 3 HOH B 107 266 123 HOH HOH . 
F 3 HOH B 108 267 124 HOH HOH . 
F 3 HOH B 109 268 126 HOH HOH . 
F 3 HOH B 110 269 127 HOH HOH . 
F 3 HOH B 111 270 128 HOH HOH . 
F 3 HOH B 112 271 129 HOH HOH . 
F 3 HOH B 113 272 132 HOH HOH . 
F 3 HOH B 114 273 133 HOH HOH . 
F 3 HOH B 115 274 135 HOH HOH . 
F 3 HOH B 116 275 136 HOH HOH . 
F 3 HOH B 117 276 138 HOH HOH . 
F 3 HOH B 118 277 145 HOH HOH . 
F 3 HOH B 119 278 147 HOH HOH . 
F 3 HOH B 120 279 148 HOH HOH . 
F 3 HOH B 121 280 149 HOH HOH . 
F 3 HOH B 122 281 152 HOH HOH . 
F 3 HOH B 123 282 153 HOH HOH . 
F 3 HOH B 124 283 154 HOH HOH . 
F 3 HOH B 125 284 155 HOH HOH . 
F 3 HOH B 126 285 157 HOH HOH . 
F 3 HOH B 127 286 60 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O O1 B55 . . . D 2 0.438 24.544 15.188 1 8.68 ? O1 B55 163 B 1 
HETATM 2 C C5 B55 . . . D 2 1.408 25.049 14.593 1 7.12 ? C5 B55 163 B 1 
HETATM 3 C C2 B55 . . . D 2 2.002 24.47 13.398 1 7.07 ? C2 B55 163 B 1 
HETATM 4 N N1 B55 . . . D 2 1.746 23.312 12.722 1 7.26 ? N1 B55 163 B 1 
HETATM 5 N N4 B55 . . . D 2 2.031 26.268 14.935 1 6.12 ? N4 B55 163 B 1 
HETATM 6 C C4 B55 . . . D 2 3.053 26.833 14.252 1 6.4 ? C4 B55 163 B 1 
HETATM 7 N N3 B55 . . . D 2 3.509 28.022 14.692 1 6.54 ? N3 B55 163 B 1 
HETATM 8 N N2 B55 . . . D 2 3.565 26.293 13.144 1 6.89 ? N2 B55 163 B 1 
HETATM 9 C C3 B55 . . . D 2 3.036 25.12 12.792 1 9.3 ? C3 B55 163 B 1 
HETATM 10 N N5 B55 . . . D 2 3.423 24.373 11.69 1 4.96 ? N5 B55 163 B 1 
HETATM 11 C C1 B55 . . . D 2 2.579 23.326 11.708 1 4.88 ? C1 B55 163 B 1 
HETATM 12 S S1 B55 . . . D 2 2.756 22.134 10.435 1 10.92 ? S1 B55 163 B 1 
#
_model_server_stats.io_time_ms              7 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    6 
_model_server_stats.query_time_ms           294 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           12 
#