data_3QBL # _model_server_result.job_id F71RmNghP3_Gj7AFegAeGw _model_server_result.datetime_utc '2024-11-02 19:32:51' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3qbl # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":359}' # _entry.id 3QBL # _exptl.entry_id 3QBL _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.005 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NITRATE ION' _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 127.23 _cell.angle_gamma 90 _cell.entry_id 3QBL _cell.length_a 150.75 _cell.length_b 100.03 _cell.length_c 99.33 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3QBL _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 F N N ? 3 G N N ? 3 J N N ? 3 M N N ? 3 N N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A NZ LYS 256 A LYS 256 1_555 D C15 RET . A RET 292 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.338 ? covale ? covale2 B NZ LYS 256 B LYS 256 1_555 H C15 RET . B RET 292 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale3 C NZ LYS 256 D LYS 256 1_555 K C15 RET . D RET 292 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.348 ? # _chem_comp.formula 'N O3 -1' _chem_comp.formula_weight 62.005 _chem_comp.id NO3 _chem_comp.mon_nstd_flag . _chem_comp.name 'NITRATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N O1 NO3 doub 366 n n N O2 NO3 sing 367 n n N O3 NO3 sing 368 n n # _atom_sites.entry_id 3QBL _atom_sites.fract_transf_matrix[1][1] 0.006633 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.005041 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009997 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012644 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 RET A 1 292 292 RET RET . E 3 NO3 A 1 359 359 NO3 NO3 . F 3 NO3 A 1 360 360 NO3 NO3 . G 3 NO3 A 1 293 293 NO3 NO3 . H 2 RET B 1 292 292 RET RET . I 4 22B B 1 300 300 22B 22B . J 3 NO3 B 1 359 359 NO3 NO3 . K 2 RET D 1 292 292 RET RET . L 4 22B D 1 300 300 22B 22B . M 3 NO3 D 1 360 360 NO3 NO3 . N 3 NO3 D 1 359 359 NO3 NO3 . O 5 HOH A 1 501 501 HOH HOH . O 5 HOH A 2 502 502 HOH HOH . O 5 HOH A 3 503 503 HOH HOH . O 5 HOH A 4 504 504 HOH HOH . O 5 HOH A 5 505 505 HOH HOH . O 5 HOH A 6 506 506 HOH HOH . O 5 HOH A 7 507 507 HOH HOH . O 5 HOH A 8 508 508 HOH HOH . O 5 HOH A 9 509 509 HOH HOH . O 5 HOH A 10 510 510 HOH HOH . O 5 HOH A 11 511 511 HOH HOH . O 5 HOH A 12 512 512 HOH HOH . O 5 HOH A 13 513 513 HOH HOH . O 5 HOH A 14 514 514 HOH HOH . O 5 HOH A 15 515 515 HOH HOH . O 5 HOH A 16 516 516 HOH HOH . O 5 HOH A 17 517 517 HOH HOH . O 5 HOH A 18 518 518 HOH HOH . O 5 HOH A 19 519 519 HOH HOH . O 5 HOH A 20 520 520 HOH HOH . O 5 HOH A 21 521 521 HOH HOH . O 5 HOH A 22 522 522 HOH HOH . O 5 HOH A 23 523 523 HOH HOH . O 5 HOH A 24 524 524 HOH HOH . O 5 HOH A 25 525 525 HOH HOH . O 5 HOH A 26 526 526 HOH HOH . O 5 HOH A 27 527 527 HOH HOH . O 5 HOH A 28 528 528 HOH HOH . O 5 HOH A 29 529 529 HOH HOH . O 5 HOH A 30 530 530 HOH HOH . O 5 HOH A 31 531 531 HOH HOH . O 5 HOH A 32 532 532 HOH HOH . O 5 HOH A 33 533 533 HOH HOH . O 5 HOH A 34 534 534 HOH HOH . O 5 HOH A 35 535 535 HOH HOH . O 5 HOH A 36 536 536 HOH HOH . O 5 HOH A 37 537 537 HOH HOH . O 5 HOH A 38 538 538 HOH HOH . O 5 HOH A 39 539 539 HOH HOH . O 5 HOH A 40 540 540 HOH HOH . O 5 HOH A 41 541 541 HOH HOH . O 5 HOH A 42 542 542 HOH HOH . O 5 HOH A 43 543 543 HOH HOH . O 5 HOH A 44 545 545 HOH HOH . O 5 HOH A 45 546 546 HOH HOH . O 5 HOH A 46 547 547 HOH HOH . O 5 HOH A 47 550 550 HOH HOH . O 5 HOH A 48 565 565 HOH HOH . O 5 HOH A 49 600 600 HOH HOH . P 5 HOH B 1 501 501 HOH HOH . P 5 HOH B 2 502 502 HOH HOH . P 5 HOH B 3 503 503 HOH HOH . P 5 HOH B 4 504 504 HOH HOH . P 5 HOH B 5 505 505 HOH HOH . P 5 HOH B 6 506 506 HOH HOH . P 5 HOH B 7 507 507 HOH HOH . P 5 HOH B 8 508 508 HOH HOH . P 5 HOH B 9 509 509 HOH HOH . P 5 HOH B 10 510 510 HOH HOH . P 5 HOH B 11 511 511 HOH HOH . P 5 HOH B 12 512 512 HOH HOH . P 5 HOH B 13 513 513 HOH HOH . P 5 HOH B 14 515 515 HOH HOH . P 5 HOH B 15 516 516 HOH HOH . P 5 HOH B 16 517 517 HOH HOH . P 5 HOH B 17 518 518 HOH HOH . P 5 HOH B 18 519 519 HOH HOH . P 5 HOH B 19 520 520 HOH HOH . P 5 HOH B 20 521 521 HOH HOH . P 5 HOH B 21 522 522 HOH HOH . P 5 HOH B 22 523 523 HOH HOH . P 5 HOH B 23 524 524 HOH HOH . P 5 HOH B 24 525 525 HOH HOH . P 5 HOH B 25 526 526 HOH HOH . P 5 HOH B 26 527 527 HOH HOH . P 5 HOH B 27 528 528 HOH HOH . P 5 HOH B 28 529 529 HOH HOH . P 5 HOH B 29 530 530 HOH HOH . P 5 HOH B 30 531 531 HOH HOH . P 5 HOH B 31 532 532 HOH HOH . P 5 HOH B 32 533 533 HOH HOH . P 5 HOH B 33 534 534 HOH HOH . P 5 HOH B 34 535 535 HOH HOH . P 5 HOH B 35 536 536 HOH HOH . P 5 HOH B 36 537 537 HOH HOH . P 5 HOH B 37 538 538 HOH HOH . P 5 HOH B 38 539 539 HOH HOH . P 5 HOH B 39 540 540 HOH HOH . P 5 HOH B 40 541 541 HOH HOH . P 5 HOH B 41 542 542 HOH HOH . P 5 HOH B 42 543 543 HOH HOH . P 5 HOH B 43 544 544 HOH HOH . P 5 HOH B 44 545 545 HOH HOH . P 5 HOH B 45 546 546 HOH HOH . P 5 HOH B 46 547 547 HOH HOH . P 5 HOH B 47 548 548 HOH HOH . P 5 HOH B 48 549 549 HOH HOH . P 5 HOH B 49 550 550 HOH HOH . P 5 HOH B 50 551 551 HOH HOH . P 5 HOH B 51 552 552 HOH HOH . P 5 HOH B 52 553 553 HOH HOH . P 5 HOH B 53 554 554 HOH HOH . P 5 HOH B 54 555 555 HOH HOH . P 5 HOH B 55 556 556 HOH HOH . P 5 HOH B 56 558 558 HOH HOH . P 5 HOH B 57 561 561 HOH HOH . P 5 HOH B 58 563 563 HOH HOH . P 5 HOH B 59 564 564 HOH HOH . Q 5 HOH D 1 501 501 HOH HOH . Q 5 HOH D 2 502 502 HOH HOH . Q 5 HOH D 3 503 503 HOH HOH . Q 5 HOH D 4 504 504 HOH HOH . Q 5 HOH D 5 505 505 HOH HOH . Q 5 HOH D 6 506 506 HOH HOH . Q 5 HOH D 7 507 507 HOH HOH . Q 5 HOH D 8 508 508 HOH HOH . Q 5 HOH D 9 509 509 HOH HOH . Q 5 HOH D 10 510 510 HOH HOH . Q 5 HOH D 11 511 511 HOH HOH . Q 5 HOH D 12 512 512 HOH HOH . Q 5 HOH D 13 514 514 HOH HOH . Q 5 HOH D 14 515 515 HOH HOH . Q 5 HOH D 15 517 517 HOH HOH . Q 5 HOH D 16 518 518 HOH HOH . Q 5 HOH D 17 520 520 HOH HOH . Q 5 HOH D 18 521 521 HOH HOH . Q 5 HOH D 19 522 522 HOH HOH . Q 5 HOH D 20 523 523 HOH HOH . Q 5 HOH D 21 531 531 HOH HOH . Q 5 HOH D 22 536 536 HOH HOH . Q 5 HOH D 23 540 540 HOH HOH . Q 5 HOH D 24 543 543 HOH HOH . Q 5 HOH D 25 547 547 HOH HOH . Q 5 HOH D 26 548 548 HOH HOH . Q 5 HOH D 27 552 552 HOH HOH . Q 5 HOH D 28 553 553 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N NO3 . . . J 3 28.306 -1.582 5.53 1 33.02 ? N NO3 359 B 1 HETATM 2 O O1 NO3 . . . J 3 29.099 -0.459 5.379 1 36.37 ? O1 NO3 359 B 1 HETATM 3 O O2 NO3 . . . J 3 28.694 -2.776 4.958 1 37.35 ? O2 NO3 359 B 1 HETATM 4 O O3 NO3 . . . J 3 27.152 -1.554 6.217 1 38.05 ? O3 NO3 359 B 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 11 _model_server_stats.query_time_ms 300 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 4 #