data_3QBW
#
_model_server_result.job_id            vOjC_ZbG51FO3w7uUXjjug 
_model_server_result.datetime_utc      '2025-03-03 16:53:19' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3qbw 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":601}' 
#
_entry.id    3QBW 
#
_exptl.entry_id    3QBW 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              427.201 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "ADENOSINE-5'-DIPHOSPHATE" 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            3QBW 
_cell.length_a            90.218 
_cell.length_b            90.218 
_cell.length_c            174.82 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3QBW 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        173 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 63' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 E N N 
#
_chem_comp.formula           'C10 H15 N5 O10 P2' 
_chem_comp.formula_weight    427.201 
_chem_comp.id                ADP 
_chem_comp.mon_nstd_flag     n 
_chem_comp.name              "ADENOSINE-5'-DIPHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PB O1B ADP doub 1 n n 
PB O2B ADP sing 2 n n 
PB O3B ADP sing 3 n n 
PB O3A ADP sing 4 n n 
O2B HOB2 ADP sing 5 n n 
O3B HOB3 ADP sing 6 n n 
PA O1A ADP doub 7 n n 
PA O2A ADP sing 8 n n 
PA O3A ADP sing 9 n n 
PA O5' ADP sing 10 n n 
O2A HOA2 ADP sing 11 n n 
O5' C5' ADP sing 12 n n 
C5' C4' ADP sing 13 n n 
C5' "H5'1" ADP sing 14 n n 
C5' "H5'2" ADP sing 15 n n 
C4' O4' ADP sing 16 n n 
C4' C3' ADP sing 17 n n 
C4' H4' ADP sing 18 n n 
O4' C1' ADP sing 19 n n 
C3' O3' ADP sing 20 n n 
C3' C2' ADP sing 21 n n 
C3' H3' ADP sing 22 n n 
O3' HO3' ADP sing 23 n n 
C2' O2' ADP sing 24 n n 
C2' C1' ADP sing 25 n n 
C2' H2' ADP sing 26 n n 
O2' HO2' ADP sing 27 n n 
C1' N9 ADP sing 28 n n 
C1' H1' ADP sing 29 n n 
N9 C8 ADP sing 30 n y 
N9 C4 ADP sing 31 n y 
C8 N7 ADP doub 32 n y 
C8 H8 ADP sing 33 n n 
N7 C5 ADP sing 34 n y 
C5 C6 ADP sing 35 n y 
C5 C4 ADP doub 36 n y 
C6 N6 ADP sing 37 n n 
C6 N1 ADP doub 38 n y 
N6 HN61 ADP sing 39 n n 
N6 HN62 ADP sing 40 n n 
N1 C2 ADP sing 41 n y 
C2 N3 ADP doub 42 n y 
C2 H2 ADP sing 43 n n 
N3 C4 ADP sing 44 n y 
#
_atom_sites.entry_id                     3QBW 
_atom_sites.fract_transf_matrix[1][1]    0.011084 
_atom_sites.fract_transf_matrix[1][2]    0.0064 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.012799 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.00572 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 ADP A 1 601 601 ADP ADP . 
D 3 SO4 A 1 372 372 SO4 SO4 . 
E 2 ADP B 1 602 602 ADP ADP . 
F 3 SO4 B 1 372 372 SO4 SO4 . 
G 4 HOH A 1 373 373 HOH HOH . 
G 4 HOH A 2 374 374 HOH HOH . 
G 4 HOH A 3 375 375 HOH HOH . 
G 4 HOH A 4 376 376 HOH HOH . 
G 4 HOH A 5 377 377 HOH HOH . 
G 4 HOH A 6 378 378 HOH HOH . 
G 4 HOH A 7 379 379 HOH HOH . 
G 4 HOH A 8 380 380 HOH HOH . 
G 4 HOH A 9 381 381 HOH HOH . 
G 4 HOH A 10 382 382 HOH HOH . 
G 4 HOH A 11 383 383 HOH HOH . 
G 4 HOH A 12 384 384 HOH HOH . 
G 4 HOH A 13 385 385 HOH HOH . 
G 4 HOH A 14 386 386 HOH HOH . 
G 4 HOH A 15 387 387 HOH HOH . 
G 4 HOH A 16 388 388 HOH HOH . 
G 4 HOH A 17 389 389 HOH HOH . 
G 4 HOH A 18 390 390 HOH HOH . 
G 4 HOH A 19 391 391 HOH HOH . 
G 4 HOH A 20 392 392 HOH HOH . 
G 4 HOH A 21 393 393 HOH HOH . 
G 4 HOH A 22 394 394 HOH HOH . 
G 4 HOH A 23 395 395 HOH HOH . 
G 4 HOH A 24 396 396 HOH HOH . 
G 4 HOH A 25 397 397 HOH HOH . 
G 4 HOH A 26 398 398 HOH HOH . 
G 4 HOH A 27 399 399 HOH HOH . 
G 4 HOH A 28 400 400 HOH HOH . 
G 4 HOH A 29 401 401 HOH HOH . 
G 4 HOH A 30 402 402 HOH HOH . 
G 4 HOH A 31 403 403 HOH HOH . 
G 4 HOH A 32 404 404 HOH HOH . 
G 4 HOH A 33 405 405 HOH HOH . 
G 4 HOH A 34 406 406 HOH HOH . 
G 4 HOH A 35 407 407 HOH HOH . 
G 4 HOH A 36 408 408 HOH HOH . 
G 4 HOH A 37 409 409 HOH HOH . 
G 4 HOH A 38 410 410 HOH HOH . 
G 4 HOH A 39 411 411 HOH HOH . 
G 4 HOH A 40 412 412 HOH HOH . 
G 4 HOH A 41 413 413 HOH HOH . 
G 4 HOH A 42 414 414 HOH HOH . 
G 4 HOH A 43 415 415 HOH HOH . 
G 4 HOH A 44 416 416 HOH HOH . 
G 4 HOH A 45 417 417 HOH HOH . 
G 4 HOH A 46 418 418 HOH HOH . 
G 4 HOH A 47 419 419 HOH HOH . 
G 4 HOH A 48 420 420 HOH HOH . 
G 4 HOH A 49 421 421 HOH HOH . 
G 4 HOH A 50 422 422 HOH HOH . 
G 4 HOH A 51 423 423 HOH HOH . 
G 4 HOH A 52 424 424 HOH HOH . 
G 4 HOH A 53 425 425 HOH HOH . 
G 4 HOH A 54 426 426 HOH HOH . 
G 4 HOH A 55 427 427 HOH HOH . 
G 4 HOH A 56 428 428 HOH HOH . 
G 4 HOH A 57 429 429 HOH HOH . 
G 4 HOH A 58 430 430 HOH HOH . 
G 4 HOH A 59 431 431 HOH HOH . 
G 4 HOH A 60 432 432 HOH HOH . 
G 4 HOH A 61 433 433 HOH HOH . 
G 4 HOH A 62 434 434 HOH HOH . 
G 4 HOH A 63 435 435 HOH HOH . 
G 4 HOH A 64 436 436 HOH HOH . 
G 4 HOH A 65 437 437 HOH HOH . 
G 4 HOH A 66 438 438 HOH HOH . 
G 4 HOH A 67 439 439 HOH HOH . 
G 4 HOH A 68 440 440 HOH HOH . 
G 4 HOH A 69 441 441 HOH HOH . 
H 4 HOH B 1 373 373 HOH HOH . 
H 4 HOH B 2 374 374 HOH HOH . 
H 4 HOH B 3 375 375 HOH HOH . 
H 4 HOH B 4 376 376 HOH HOH . 
H 4 HOH B 5 377 377 HOH HOH . 
H 4 HOH B 6 378 378 HOH HOH . 
H 4 HOH B 7 379 379 HOH HOH . 
H 4 HOH B 8 380 380 HOH HOH . 
H 4 HOH B 9 381 381 HOH HOH . 
H 4 HOH B 10 382 382 HOH HOH . 
H 4 HOH B 11 383 383 HOH HOH . 
H 4 HOH B 12 384 384 HOH HOH . 
H 4 HOH B 13 385 385 HOH HOH . 
H 4 HOH B 14 386 386 HOH HOH . 
H 4 HOH B 15 387 387 HOH HOH . 
H 4 HOH B 16 388 388 HOH HOH . 
H 4 HOH B 17 389 389 HOH HOH . 
H 4 HOH B 18 390 390 HOH HOH . 
H 4 HOH B 19 391 391 HOH HOH . 
H 4 HOH B 20 392 392 HOH HOH . 
H 4 HOH B 21 393 393 HOH HOH . 
H 4 HOH B 22 394 394 HOH HOH . 
H 4 HOH B 23 395 395 HOH HOH . 
H 4 HOH B 24 396 396 HOH HOH . 
H 4 HOH B 25 397 397 HOH HOH . 
H 4 HOH B 26 398 398 HOH HOH . 
H 4 HOH B 27 399 399 HOH HOH . 
H 4 HOH B 28 400 400 HOH HOH . 
H 4 HOH B 29 401 401 HOH HOH . 
H 4 HOH B 30 402 402 HOH HOH . 
H 4 HOH B 31 403 403 HOH HOH . 
H 4 HOH B 32 404 404 HOH HOH . 
H 4 HOH B 33 405 405 HOH HOH . 
H 4 HOH B 34 406 406 HOH HOH . 
H 4 HOH B 35 407 407 HOH HOH . 
H 4 HOH B 36 408 408 HOH HOH . 
H 4 HOH B 37 409 409 HOH HOH . 
H 4 HOH B 38 410 410 HOH HOH . 
H 4 HOH B 39 411 411 HOH HOH . 
H 4 HOH B 40 412 412 HOH HOH . 
H 4 HOH B 41 413 413 HOH HOH . 
H 4 HOH B 42 414 414 HOH HOH . 
H 4 HOH B 43 415 415 HOH HOH . 
H 4 HOH B 44 416 416 HOH HOH . 
H 4 HOH B 45 417 417 HOH HOH . 
H 4 HOH B 46 418 418 HOH HOH . 
H 4 HOH B 47 419 419 HOH HOH . 
H 4 HOH B 48 420 420 HOH HOH . 
H 4 HOH B 49 421 421 HOH HOH . 
H 4 HOH B 50 422 422 HOH HOH . 
H 4 HOH B 51 423 423 HOH HOH . 
H 4 HOH B 52 424 424 HOH HOH . 
H 4 HOH B 53 425 425 HOH HOH . 
H 4 HOH B 54 426 426 HOH HOH . 
H 4 HOH B 55 427 427 HOH HOH . 
H 4 HOH B 56 428 428 HOH HOH . 
H 4 HOH B 57 429 429 HOH HOH . 
H 4 HOH B 58 430 430 HOH HOH . 
H 4 HOH B 59 431 431 HOH HOH . 
H 4 HOH B 60 432 432 HOH HOH . 
H 4 HOH B 61 433 433 HOH HOH . 
H 4 HOH B 62 434 434 HOH HOH . 
H 4 HOH B 63 435 435 HOH HOH . 
H 4 HOH B 64 436 436 HOH HOH . 
H 4 HOH B 65 437 437 HOH HOH . 
H 4 HOH B 66 438 438 HOH HOH . 
H 4 HOH B 67 439 439 HOH HOH . 
H 4 HOH B 68 440 440 HOH HOH . 
H 4 HOH B 69 441 441 HOH HOH . 
H 4 HOH B 70 442 442 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PB ADP . . . C 2 17.652 54.532 86.661 1 42.46 ? PB ADP 601 A 1 
HETATM 2 O O1B ADP . . . C 2 19.02 53.895 87.072 1 41.28 ? O1B ADP 601 A 1 
HETATM 3 O O2B ADP . . . C 2 16.53 54.108 87.679 1 42.16 ? O2B ADP 601 A 1 
HETATM 4 O O3B ADP . . . C 2 17.855 56.03 86.643 1 42.94 ? O3B ADP 601 A 1 
HETATM 5 P PA ADP . . . C 2 16.512 52.72 84.853 1 41.97 ? PA ADP 601 A 1 
HETATM 6 O O1A ADP . . . C 2 17.529 51.855 84.036 1 41.45 ? O1A ADP 601 A 1 
HETATM 7 O O2A ADP . . . C 2 16.108 51.99 86.111 1 41.88 ? O2A ADP 601 A 1 
HETATM 8 O O3A ADP . . . C 2 17.205 54.097 85.2 1 41.25 ? O3A ADP 601 A 1 
HETATM 9 O O5' ADP . . . C 2 15.229 52.925 83.952 1 41.05 ? O5' ADP 601 A 1 
HETATM 10 C C5' ADP . . . C 2 14.197 53.823 84.257 1 40.9 ? C5' ADP 601 A 1 
HETATM 11 C C4' ADP . . . C 2 13.747 54.723 83.127 1 40.66 ? C4' ADP 601 A 1 
HETATM 12 O O4' ADP . . . C 2 13.773 53.961 81.871 1 39.51 ? O4' ADP 601 A 1 
HETATM 13 C C3' ADP . . . C 2 12.311 55.228 83.237 1 40.45 ? C3' ADP 601 A 1 
HETATM 14 O O3' ADP . . . C 2 12.209 56.352 84.035 1 39.2 ? O3' ADP 601 A 1 
HETATM 15 C C2' ADP . . . C 2 11.932 55.503 81.814 1 40.75 ? C2' ADP 601 A 1 
HETATM 16 O O2' ADP . . . C 2 12.331 56.751 81.353 1 39.34 ? O2' ADP 601 A 1 
HETATM 17 C C1' ADP . . . C 2 12.727 54.497 80.996 1 40.2 ? C1' ADP 601 A 1 
HETATM 18 N N9 ADP . . . C 2 11.824 53.44 80.593 1 41.37 ? N9 ADP 601 A 1 
HETATM 19 C C8 ADP . . . C 2 11.6 52.265 81.223 1 42.01 ? C8 ADP 601 A 1 
HETATM 20 N N7 ADP . . . C 2 10.633 51.522 80.447 1 41.82 ? N7 ADP 601 A 1 
HETATM 21 C C5 ADP . . . C 2 10.293 52.304 79.323 1 42 ? C5 ADP 601 A 1 
HETATM 22 C C6 ADP . . . C 2 9.372 52.103 78.228 1 41.34 ? C6 ADP 601 A 1 
HETATM 23 N N6 ADP . . . C 2 8.585 50.906 78.126 1 40.62 ? N6 ADP 601 A 1 
HETATM 24 N N1 ADP . . . C 2 9.238 53.049 77.296 1 42.3 ? N1 ADP 601 A 1 
HETATM 25 C C2 ADP . . . C 2 9.985 54.221 77.347 1 41.86 ? C2 ADP 601 A 1 
HETATM 26 N N3 ADP . . . C 2 10.869 54.433 78.435 1 43.03 ? N3 ADP 601 A 1 
HETATM 27 C C4 ADP . . . C 2 10.992 53.482 79.396 1 41.68 ? C4 ADP 601 A 1 
#
_model_server_stats.io_time_ms              6 
_model_server_stats.parse_time_ms           6 
_model_server_stats.create_model_time_ms    16 
_model_server_stats.query_time_ms           254 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           27 
#