data_3QBX # _model_server_result.job_id 41q8PBmem8ji9XfED1sg8g _model_server_result.datetime_utc '2024-12-01 05:55:22' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3qbx # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":653}' # _entry.id 3QBX # _exptl.entry_id 3QBX _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 275.255 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '2-(2-ACETYLAMINO-4-HYDROXY-6,8-DIOXA-BICYCLO[3.2.1]OCT-3-YLOXY)-PROPIONIC ACID' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3QBX _cell.length_a 91.48 _cell.length_b 91.48 _cell.length_c 173.33 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3QBX _symmetry.cell_setting ? _symmetry.Int_Tables_number 173 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 63' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 E N N # _chem_comp.formula 'C11 H17 N O7' _chem_comp.formula_weight 275.255 _chem_comp.id AH0 _chem_comp.mon_nstd_flag . _chem_comp.name '2-(2-ACETYLAMINO-4-HYDROXY-6,8-DIOXA-BICYCLO[3.2.1]OCT-3-YLOXY)-PROPIONIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms '1,6-anhydro-N-acetylmuramic acid' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 AH0 sing 1 n n C1 O5 AH0 sing 2 n n C1 O6 AH0 sing 3 n n C1 H1 AH0 sing 4 n n C2 N2 AH0 sing 5 n n C2 C3 AH0 sing 6 n n C2 H2 AH0 sing 7 n n N2 C7 AH0 sing 8 n n N2 HN2 AH0 sing 9 n n C7 O7 AH0 doub 10 n n C7 C8 AH0 sing 11 n n C8 H81 AH0 sing 12 n n C8 H82 AH0 sing 13 n n C8 H83 AH0 sing 14 n n C3 O3 AH0 sing 15 n n C3 C4 AH0 sing 16 n n C3 H3 AH0 sing 17 n n O3 CA AH0 sing 18 n n C4 O4 AH0 sing 19 n n C4 C5 AH0 sing 20 n n C4 H4 AH0 sing 21 n n O4 HO4 AH0 sing 22 n n C5 O5 AH0 sing 23 n n C5 C6 AH0 sing 24 n n C5 H5 AH0 sing 25 n n C6 O6 AH0 sing 26 n n C6 H61 AH0 sing 27 n n C6 H62 AH0 sing 28 n n CA CB AH0 sing 29 n n CA C AH0 sing 30 n n CA HA AH0 sing 31 n n CB HB1 AH0 sing 32 n n CB HB2 AH0 sing 33 n n CB HB3 AH0 sing 34 n n C O AH0 doub 35 n n C OXT AH0 sing 36 n n OXT HXT AH0 sing 37 n n # _atom_sites.entry_id 3QBX _atom_sites.fract_transf_matrix[1][1] 0.010931 _atom_sites.fract_transf_matrix[1][2] 0.006311 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012622 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005769 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 AH0 A 1 653 653 AH0 AH0 . D 3 SO4 A 1 372 372 SO4 SO4 . E 2 AH0 B 1 654 654 AH0 AH0 . F 3 SO4 B 1 372 372 SO4 SO4 . G 4 HOH A 1 373 373 HOH HOH . G 4 HOH A 2 374 374 HOH HOH . G 4 HOH A 3 375 375 HOH HOH . G 4 HOH A 4 376 376 HOH HOH . G 4 HOH A 5 377 377 HOH HOH . G 4 HOH A 6 378 378 HOH HOH . G 4 HOH A 7 379 379 HOH HOH . G 4 HOH A 8 380 380 HOH HOH . G 4 HOH A 9 381 381 HOH HOH . G 4 HOH A 10 382 382 HOH HOH . G 4 HOH A 11 383 383 HOH HOH . G 4 HOH A 12 384 384 HOH HOH . G 4 HOH A 13 385 385 HOH HOH . G 4 HOH A 14 386 386 HOH HOH . G 4 HOH A 15 387 387 HOH HOH . G 4 HOH A 16 388 388 HOH HOH . G 4 HOH A 17 389 389 HOH HOH . G 4 HOH A 18 390 390 HOH HOH . G 4 HOH A 19 391 391 HOH HOH . G 4 HOH A 20 392 392 HOH HOH . G 4 HOH A 21 393 393 HOH HOH . G 4 HOH A 22 394 394 HOH HOH . G 4 HOH A 23 395 395 HOH HOH . G 4 HOH A 24 396 396 HOH HOH . G 4 HOH A 25 397 397 HOH HOH . G 4 HOH A 26 398 398 HOH HOH . G 4 HOH A 27 399 399 HOH HOH . G 4 HOH A 28 400 400 HOH HOH . G 4 HOH A 29 401 401 HOH HOH . G 4 HOH A 30 402 402 HOH HOH . G 4 HOH A 31 403 403 HOH HOH . G 4 HOH A 32 404 404 HOH HOH . G 4 HOH A 33 405 405 HOH HOH . G 4 HOH A 34 406 406 HOH HOH . G 4 HOH A 35 407 407 HOH HOH . G 4 HOH A 36 408 408 HOH HOH . G 4 HOH A 37 409 409 HOH HOH . G 4 HOH A 38 410 410 HOH HOH . G 4 HOH A 39 411 411 HOH HOH . G 4 HOH A 40 412 412 HOH HOH . G 4 HOH A 41 413 413 HOH HOH . G 4 HOH A 42 414 414 HOH HOH . G 4 HOH A 43 415 415 HOH HOH . G 4 HOH A 44 416 416 HOH HOH . G 4 HOH A 45 417 417 HOH HOH . G 4 HOH A 46 418 418 HOH HOH . G 4 HOH A 47 419 419 HOH HOH . G 4 HOH A 48 420 420 HOH HOH . G 4 HOH A 49 421 421 HOH HOH . G 4 HOH A 50 422 422 HOH HOH . G 4 HOH A 51 423 423 HOH HOH . G 4 HOH A 52 424 424 HOH HOH . G 4 HOH A 53 425 425 HOH HOH . G 4 HOH A 54 426 426 HOH HOH . G 4 HOH A 55 427 427 HOH HOH . G 4 HOH A 56 428 428 HOH HOH . G 4 HOH A 57 429 429 HOH HOH . G 4 HOH A 58 430 430 HOH HOH . G 4 HOH A 59 431 431 HOH HOH . G 4 HOH A 60 432 432 HOH HOH . G 4 HOH A 61 433 433 HOH HOH . G 4 HOH A 62 434 434 HOH HOH . G 4 HOH A 63 435 435 HOH HOH . G 4 HOH A 64 436 436 HOH HOH . G 4 HOH A 65 437 437 HOH HOH . G 4 HOH A 66 438 438 HOH HOH . G 4 HOH A 67 439 439 HOH HOH . G 4 HOH A 68 440 440 HOH HOH . G 4 HOH A 69 441 441 HOH HOH . G 4 HOH A 70 442 442 HOH HOH . G 4 HOH A 71 443 443 HOH HOH . G 4 HOH A 72 444 444 HOH HOH . G 4 HOH A 73 445 445 HOH HOH . G 4 HOH A 74 446 446 HOH HOH . G 4 HOH A 75 447 447 HOH HOH . G 4 HOH A 76 448 448 HOH HOH . H 4 HOH B 1 373 373 HOH HOH . H 4 HOH B 2 374 374 HOH HOH . H 4 HOH B 3 375 375 HOH HOH . H 4 HOH B 4 376 376 HOH HOH . H 4 HOH B 5 377 377 HOH HOH . H 4 HOH B 6 378 378 HOH HOH . H 4 HOH B 7 379 379 HOH HOH . H 4 HOH B 8 380 380 HOH HOH . H 4 HOH B 9 381 381 HOH HOH . H 4 HOH B 10 382 382 HOH HOH . H 4 HOH B 11 383 383 HOH HOH . H 4 HOH B 12 384 384 HOH HOH . H 4 HOH B 13 385 385 HOH HOH . H 4 HOH B 14 386 386 HOH HOH . H 4 HOH B 15 387 387 HOH HOH . H 4 HOH B 16 388 388 HOH HOH . H 4 HOH B 17 389 389 HOH HOH . H 4 HOH B 18 390 390 HOH HOH . H 4 HOH B 19 391 391 HOH HOH . H 4 HOH B 20 392 392 HOH HOH . H 4 HOH B 21 393 393 HOH HOH . H 4 HOH B 22 394 394 HOH HOH . H 4 HOH B 23 395 395 HOH HOH . H 4 HOH B 24 396 396 HOH HOH . H 4 HOH B 25 397 397 HOH HOH . H 4 HOH B 26 398 398 HOH HOH . H 4 HOH B 27 399 399 HOH HOH . H 4 HOH B 28 400 400 HOH HOH . H 4 HOH B 29 401 401 HOH HOH . H 4 HOH B 30 402 402 HOH HOH . H 4 HOH B 31 403 403 HOH HOH . H 4 HOH B 32 404 404 HOH HOH . H 4 HOH B 33 405 405 HOH HOH . H 4 HOH B 34 406 406 HOH HOH . H 4 HOH B 35 407 407 HOH HOH . H 4 HOH B 36 408 408 HOH HOH . H 4 HOH B 37 409 409 HOH HOH . H 4 HOH B 38 410 410 HOH HOH . H 4 HOH B 39 411 411 HOH HOH . H 4 HOH B 40 412 412 HOH HOH . H 4 HOH B 41 413 413 HOH HOH . H 4 HOH B 42 414 414 HOH HOH . H 4 HOH B 43 415 415 HOH HOH . H 4 HOH B 44 416 416 HOH HOH . H 4 HOH B 45 417 417 HOH HOH . H 4 HOH B 46 418 418 HOH HOH . H 4 HOH B 47 419 419 HOH HOH . H 4 HOH B 48 420 420 HOH HOH . H 4 HOH B 49 421 421 HOH HOH . H 4 HOH B 50 422 422 HOH HOH . H 4 HOH B 51 423 423 HOH HOH . H 4 HOH B 52 424 424 HOH HOH . H 4 HOH B 53 425 425 HOH HOH . H 4 HOH B 54 426 426 HOH HOH . H 4 HOH B 55 427 427 HOH HOH . H 4 HOH B 56 428 428 HOH HOH . H 4 HOH B 57 429 429 HOH HOH . H 4 HOH B 58 430 430 HOH HOH . H 4 HOH B 59 431 431 HOH HOH . H 4 HOH B 60 432 432 HOH HOH . H 4 HOH B 61 433 433 HOH HOH . H 4 HOH B 62 434 434 HOH HOH . H 4 HOH B 63 435 435 HOH HOH . H 4 HOH B 64 436 436 HOH HOH . H 4 HOH B 65 437 437 HOH HOH . H 4 HOH B 66 438 438 HOH HOH . H 4 HOH B 67 439 439 HOH HOH . H 4 HOH B 68 440 440 HOH HOH . H 4 HOH B 69 441 441 HOH HOH . H 4 HOH B 70 442 442 HOH HOH . H 4 HOH B 71 443 443 HOH HOH . H 4 HOH B 72 444 444 HOH HOH . H 4 HOH B 73 445 445 HOH HOH . H 4 HOH B 74 446 446 HOH HOH . H 4 HOH B 75 447 447 HOH HOH . H 4 HOH B 76 448 448 HOH HOH . H 4 HOH B 77 449 449 HOH HOH . H 4 HOH B 78 450 450 HOH HOH . H 4 HOH B 79 451 451 HOH HOH . H 4 HOH B 80 452 452 HOH HOH . H 4 HOH B 81 453 453 HOH HOH . H 4 HOH B 82 454 454 HOH HOH . H 4 HOH B 83 455 455 HOH HOH . H 4 HOH B 84 456 456 HOH HOH . H 4 HOH B 85 457 457 HOH HOH . H 4 HOH B 86 458 458 HOH HOH . H 4 HOH B 87 459 459 HOH HOH . H 4 HOH B 88 460 460 HOH HOH . H 4 HOH B 89 461 461 HOH HOH . H 4 HOH B 90 462 462 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 AH0 . . . C 2 23.478 58.095 85.28 1 28.38 ? C1 AH0 653 A 1 HETATM 2 C C2 AH0 . . . C 2 24.436 57.566 86.41 1 27.94 ? C2 AH0 653 A 1 HETATM 3 N N2 AH0 . . . C 2 25.202 58.625 87.073 1 25.81 ? N2 AH0 653 A 1 HETATM 4 C C7 AH0 . . . C 2 25.163 58.88 88.38 1 27.8 ? C7 AH0 653 A 1 HETATM 5 O O7 AH0 . . . C 2 24.419 58.181 89.101 1 26.65 ? O7 AH0 653 A 1 HETATM 6 C C8 AH0 . . . C 2 26.019 60.004 89.003 1 25 ? C8 AH0 653 A 1 HETATM 7 C C3 AH0 . . . C 2 25.47 56.496 85.89 1 28.5 ? C3 AH0 653 A 1 HETATM 8 O O3 AH0 . . . C 2 24.981 55.212 86.13 1 28.53 ? O3 AH0 653 A 1 HETATM 9 C C4 AH0 . . . C 2 25.824 56.79 84.395 1 28.5 ? C4 AH0 653 A 1 HETATM 10 O O4 AH0 . . . C 2 26.854 57.784 84.413 1 26.14 ? O4 AH0 653 A 1 HETATM 11 C C5 AH0 . . . C 2 24.612 57.341 83.585 1 29.32 ? C5 AH0 653 A 1 HETATM 12 O O5 AH0 . . . C 2 24.187 58.594 84.133 1 29.09 ? O5 AH0 653 A 1 HETATM 13 C C6 AH0 . . . C 2 23.336 56.52 83.562 1 28.22 ? C6 AH0 653 A 1 HETATM 14 O O6 AH0 . . . C 2 22.686 57.005 84.748 1 30.26 ? O6 AH0 653 A 1 HETATM 15 C CA AH0 . . . C 2 25.489 53.999 85.501 1 31.18 ? CA AH0 653 A 1 HETATM 16 C CB AH0 . . . C 2 24.852 52.771 86.164 1 29.67 ? CB AH0 653 A 1 HETATM 17 C C AH0 . . . C 2 26.994 53.871 85.531 1 31.02 ? C AH0 653 A 1 HETATM 18 O O AH0 . . . C 2 27.556 53.158 84.691 1 32.22 ? O AH0 653 A 1 HETATM 19 O OXT AH0 . . . C 2 27.745 54.502 86.434 1 30.84 ? OXT AH0 653 A 1 # _model_server_stats.io_time_ms 25 _model_server_stats.parse_time_ms 27 _model_server_stats.create_model_time_ms 29 _model_server_stats.query_time_ms 1099 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 19 #