data_3QCR
#
_model_server_result.job_id            CnvmZK2T3ptiWpFPOJQ60w 
_model_server_result.datetime_utc      '2024-11-21 22:42:35' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3qcr 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":15}' 
#
_entry.id    3QCR 
#
_exptl.entry_id    3QCR 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              749.906 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "N,N'-[acridine-3,6-diylbis(1H-1,2,3-triazole-1,4-diylbenzene-3,1-diyl)]bis[3-(diethylamino)propanamide]" 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            3QCR 
_cell.length_a            71.674 
_cell.length_b            71.674 
_cell.length_c            29.37 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3QCR 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        180 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 62 2 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 7_555 y,x,-z+2/3 -0.5 0.866025 0 0.866025 0.5 0 0 0 -1 0 0 19.58 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A O6 DG 3 A DG 3 1_555 C K K . A K 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.45 ? 
metalc ? metalc2 A O6 DG 4 A DG 4 1_555 B K K . A K 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.475 ? 
metalc ? metalc3 A O6 DG 4 A DG 4 1_555 C K K . A K 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.28 ? 
metalc ? metalc4 A O6 DG 5 A DG 5 1_555 B K K . A K 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.286 ? 
metalc ? metalc5 A O6 DG 9 A DG 9 1_555 C K K . A K 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.926 ? 
hydrog TYPE_6_PAIR hydrog1 A N1 DG 3 A DG 3 1_555 A O6 DG 9 A DG 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog TYPE_6_PAIR hydrog2 A N2 DG 3 A DG 3 1_555 A N7 DG 9 A DG 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog TYPE_6_PAIR hydrog3 A N1 DG 4 A DG 4 1_555 A O6 DG 10 A DG 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog TYPE_6_PAIR hydrog4 A N2 DG 4 A DG 4 1_555 A N7 DG 10 A DG 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog TYPE_6_PAIR hydrog5 A N1 DG 5 A DG 5 1_555 A O6 DG 11 A DG 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog TYPE_6_PAIR hydrog6 A N2 DG 5 A DG 5 1_555 A N7 DG 11 A DG 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
#
_chem_comp.formula           'C43 H47 N11 O2' 
_chem_comp.formula_weight    749.906 
_chem_comp.id                R14 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "N,N'-[acridine-3,6-diylbis(1H-1,2,3-triazole-1,4-diylbenzene-3,1-diyl)]bis[3-(diethylamino)propanamide]" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'triazole-acridine conjugate' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
CAX CAA R14 sing 115 n n 
CAA HAA R14 sing 116 n n 
CAA HAAA R14 sing 117 n n 
CAA HAAB R14 sing 118 n n 
CAY CAB R14 sing 119 n n 
CAB HAB R14 sing 120 n n 
CAB HABA R14 sing 121 n n 
CAB HABB R14 sing 122 n n 
CAC CAZ R14 sing 123 n n 
CAC HAC R14 sing 124 n n 
CAC HACA R14 sing 125 n n 
CAC HACB R14 sing 126 n n 
CAD CBA R14 sing 127 n n 
CAD HAD R14 sing 128 n n 
CAD HADA R14 sing 129 n n 
CAD HADB R14 sing 130 n n 
OAE CBM R14 doub 131 n n 
CBN OAF R14 doub 132 n n 
CAK CAG R14 doub 133 n y 
CAG CAI R14 sing 134 n y 
CAG HAG R14 sing 135 n n 
CAJ CAH R14 doub 136 n y 
CAH CAL R14 sing 137 n y 
CAH HAH R14 sing 138 n n 
CAI CBO R14 doub 139 n y 
CAI HAI R14 sing 140 n n 
CBP CAJ R14 sing 141 n y 
CAJ HAJ R14 sing 142 n n 
CAK CBQ R14 sing 143 n y 
CAK HAK R14 sing 144 n n 
CBR CAL R14 doub 145 n y 
CAL HAL R14 sing 146 n n 
CAO CAM R14 doub 147 n y 
CAM CBS R14 sing 148 n y 
CAM HAM R14 sing 149 n n 
CAN CBT R14 doub 150 n y 
CAN CAP R14 sing 151 n y 
CAN HAN R14 sing 152 n n 
CBW CAO R14 sing 153 n y 
CAO HAO R14 sing 154 n n 
CAP CBX R14 doub 155 n y 
CAP HAP R14 sing 156 n n 
CBQ CAQ R14 doub 157 n y 
CAQ CBO R14 sing 158 n y 
CAQ HAQ R14 sing 159 n n 
CBP CAR R14 doub 160 n y 
CAR CBR R14 sing 161 n y 
CAR HAR R14 sing 162 n n 
CBY CAS R14 sing 163 n y 
CAS CBS R14 doub 164 n y 
CAS HAS R14 sing 165 n n 
CBT CAT R14 sing 166 n y 
CAT CBZ R14 doub 167 n y 
CAT HAT R14 sing 168 n n 
CBX CAU R14 sing 169 n y 
CAU CBW R14 doub 170 n y 
CAU HAU R14 sing 171 n n 
NCC CAV R14 sing 172 n y 
CAV CBU R14 doub 173 n y 
CAV HAV R14 sing 174 n n 
CBV CAW R14 doub 175 n y 
NCD CAW R14 sing 176 n y 
CAW HAW R14 sing 177 n n 
NCA CAX R14 sing 178 n n 
CAX HAX R14 sing 179 n n 
CAX HAXA R14 sing 180 n n 
CAY NCA R14 sing 181 n n 
CAY HAY R14 sing 182 n n 
CAY HAYA R14 sing 183 n n 
CAZ NCB R14 sing 184 n n 
CAZ HAZ R14 sing 185 n n 
CAZ HAZA R14 sing 186 n n 
NCB CBA R14 sing 187 n n 
CBA HBA R14 sing 188 n n 
CBA HBAA R14 sing 189 n n 
CBM CBB R14 sing 190 n n 
CBB CBD R14 sing 191 n n 
CBB HBB R14 sing 192 n n 
CBB HBBA R14 sing 193 n n 
CBE CBC R14 sing 194 n n 
CBC CBN R14 sing 195 n n 
CBC HBC R14 sing 196 n n 
CBC HBCA R14 sing 197 n n 
CBD NCA R14 sing 198 n n 
CBD HBD R14 sing 199 n n 
CBD HBDA R14 sing 200 n n 
NCB CBE R14 sing 201 n n 
CBE HBE R14 sing 202 n n 
CBE HBEA R14 sing 203 n n 
NBH NBF R14 doub 204 n y 
CBU NBF R14 sing 205 n y 
NBG NBI R14 doub 206 n y 
NBG CBV R14 sing 207 n y 
NCC NBH R14 sing 208 n y 
NBI NCD R14 sing 209 n y 
CBZ NBJ R14 sing 210 n y 
NBJ CBY R14 doub 211 n y 
CBO NBK R14 sing 212 n n 
NBK CBM R14 sing 213 n n 
NBK HNBK R14 sing 214 n n 
CBN NBL R14 sing 215 n n 
NBL CBP R14 sing 216 n n 
NBL HNBL R14 sing 217 n n 
CBU CBQ R14 sing 218 n y 
CBR CBV R14 sing 219 n y 
CBS NCC R14 sing 220 n y 
NCD CBT R14 sing 221 n y 
CBW CBY R14 sing 222 n y 
CBX CBZ R14 sing 223 n y 
#
_atom_sites.entry_id                     3QCR 
_atom_sites.fract_transf_matrix[1][1]    0.013952 
_atom_sites.fract_transf_matrix[1][2]    0.008055 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.01611 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.034048 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 K A 1 13 13 K K . 
C 2 K A 1 14 14 K K . 
D 3 R14 A 1 15 1 R14 R14 . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C CAA R14 . . . D 3 18.156 36.833 21.916 0.1 20 ? CAA R14 15 A 1 
HETATM 2 C CAB R14 . . . D 3 16.146 32.869 23.502 0.1 20 ? CAB R14 15 A 1 
HETATM 3 C CAC R14 . . . D 3 34.506 28.68 10.775 0.1 20 ? CAC R14 15 A 1 
HETATM 4 C CAD R14 . . . D 3 30.886 29.655 9.303 0.1 20 ? CAD R14 15 A 1 
HETATM 5 O OAE R14 . . . D 3 16.125 32.88 18.73 0.1 20 ? OAE R14 15 A 1 
HETATM 6 O OAF R14 . . . D 3 30.135 27.154 8.573 0.5 20 ? OAF R14 15 A 1 
HETATM 7 C CAG R14 . . . D 3 12.151 34.75 17.651 0.1 20 ? CAG R14 15 A 1 
HETATM 8 C CAH R14 . . . D 3 26.501 26.61 8.083 0.5 20 ? CAH R14 15 A 1 
HETATM 9 C CAI R14 . . . D 3 13.232 34.913 18.512 0.1 20 ? CAI R14 15 A 1 
HETATM 10 C CAJ R14 . . . D 3 27.706 26.566 8.763 0.5 20 ? CAJ R14 15 A 1 
HETATM 11 C CAK R14 . . . D 3 12.365 34.59 16.288 0.1 20 ? CAK R14 15 A 1 
HETATM 12 C CAL R14 . . . D 3 25.469 27.392 8.577 0.5 20 ? CAL R14 15 A 1 
HETATM 13 C CAM R14 . . . D 3 15.4 34.252 10.28 0.5 20 ? CAM R14 15 A 1 
HETATM 14 C CAN R14 . . . D 3 21.588 31.044 8.499 0.5 20 ? CAN R14 15 A 1 
HETATM 15 C CAO R14 . . . D 3 16.311 33.905 9.286 0.5 20 ? CAO R14 15 A 1 
HETATM 16 C CAP R14 . . . D 3 20.465 31.752 8.094 0.5 20 ? CAP R14 15 A 1 
HETATM 17 C CAQ R14 . . . D 3 14.74 34.758 16.647 0.1 20 ? CAQ R14 15 A 1 
HETATM 18 C CAR R14 . . . D 3 26.842 28.074 10.438 0.5 20 ? CAR R14 15 A 1 
HETATM 19 C CAS R14 . . . D 3 16.793 33.19 11.921 0.5 20 ? CAS R14 15 A 1 
HETATM 20 C CAT R14 . . . D 3 20.821 31.103 10.777 0.5 20 ? CAT R14 15 A 1 
HETATM 21 C CAU R14 . . . D 3 18.385 32.837 8.644 0.5 20 ? CAU R14 15 A 1 
HETATM 22 C CAV R14 . . . D 3 15.059 34.234 13.863 0.1 20 ? CAV R14 15 A 1 
HETATM 23 C CAW R14 . . . D 3 23.679 29.431 9.407 0.5 20 ? CAW R14 15 A 1 
HETATM 24 C CAX R14 . . . D 3 17.069 35.822 22.29 0.1 20 ? CAX R14 15 A 1 
HETATM 25 C CAY R14 . . . D 3 17.192 33.949 23.786 0.1 20 ? CAY R14 15 A 1 
HETATM 26 C CAZ R14 . . . D 3 33.272 29.207 10.038 0.1 20 ? CAZ R14 15 A 1 
HETATM 27 C CBA R14 . . . D 3 31.628 28.703 8.362 0.1 20 ? CBA R14 15 A 1 
HETATM 28 C CBB R14 . . . D 3 17.49 34.329 20.081 0.1 20 ? CBB R14 15 A 1 
HETATM 29 C CBC R14 . . . D 3 31.454 27.026 10.585 0.5 20 ? CBC R14 15 A 1 
HETATM 30 C CBD R14 . . . D 3 17.326 33.599 21.415 0.1 20 ? CBD R14 15 A 1 
HETATM 31 C CBE R14 . . . D 3 32.639 26.929 9.625 0.5 20 ? CBE R14 15 A 1 
HETATM 32 N NBF R14 . . . D 3 12.994 34.434 13.451 0.1 20 ? NBF R14 15 A 1 
HETATM 33 N NBG R14 . . . D 3 24.195 29.174 11.441 0.5 20 ? NBG R14 15 A 1 
HETATM 34 N NBH R14 . . . D 3 13.582 34.254 12.375 0.1 20 ? NBH R14 15 A 1 
HETATM 35 N NBI R14 . . . D 3 23.169 29.871 11.393 0.5 20 ? NBI R14 15 A 1 
HETATM 36 N NBJ R14 . . . D 3 18.798 32.166 11.287 0.5 20 ? NBJ R14 15 A 1 
HETATM 37 N NBK R14 . . . D 3 15.565 35.07 18.825 0.1 20 ? NBK R14 15 A 1 
HETATM 38 N NBL R14 . . . D 3 29.039 27.217 10.556 0.5 20 ? NBL R14 15 A 1 
HETATM 39 C CBM R14 . . . D 3 16.323 34.023 19.141 0.1 20 ? CBM R14 15 A 1 
HETATM 40 C CBN R14 . . . D 3 30.14 27.132 9.807 0.5 20 ? CBN R14 15 A 1 
HETATM 41 C CBO R14 . . . D 3 14.527 34.916 18.008 0.1 20 ? CBO R14 15 A 1 
HETATM 42 C CBP R14 . . . D 3 27.874 27.287 9.938 0.5 20 ? CBP R14 15 A 1 
HETATM 43 C CBQ R14 . . . D 3 13.661 34.6 15.788 0.1 20 ? CBQ R14 15 A 1 
HETATM 44 C CBR R14 . . . D 3 25.633 28.116 9.751 0.5 20 ? CBR R14 15 A 1 
HETATM 45 C CBS R14 . . . D 3 15.659 33.905 11.599 0.5 20 ? CBS R14 15 A 1 
HETATM 46 C CBT R14 . . . D 3 21.771 30.734 9.842 0.5 20 ? CBT R14 15 A 1 
HETATM 47 C CBU R14 . . . D 3 13.892 34.434 14.431 0.1 20 ? CBU R14 15 A 1 
HETATM 48 C CBV R14 . . . D 3 24.566 28.881 10.192 0.5 20 ? CBV R14 15 A 1 
HETATM 49 C CBW R14 . . . D 3 17.464 33.196 9.619 0.5 20 ? CBW R14 15 A 1 
HETATM 50 C CBX R14 . . . D 3 19.515 32.134 9.033 0.5 20 ? CBX R14 15 A 1 
HETATM 51 C CBY R14 . . . D 3 17.7 32.842 10.94 0.5 20 ? CBY R14 15 A 1 
HETATM 52 C CBZ R14 . . . D 3 19.696 31.806 10.373 0.5 20 ? CBZ R14 15 A 1 
HETATM 53 N NCA R14 . . . D 3 17.681 34.505 22.517 0.1 20 ? NCA R14 15 A 1 
HETATM 54 N NCB R14 . . . D 3 32.868 28.242 9.005 0.1 20 ? NCB R14 15 A 1 
HETATM 55 N NCC R14 . . . D 3 14.801 34.172 12.569 0.1 20 ? NCC R14 15 A 1 
HETATM 56 N NCD R14 . . . D 3 22.839 30.046 10.211 0.5 20 ? NCD R14 15 A 1 
#
_model_server_stats.io_time_ms              6 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    1 
_model_server_stats.query_time_ms           293 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           56 
#