data_3QCV # _model_server_result.job_id e_dQujBG2Wl450yRRSdL1w _model_server_result.datetime_utc '2024-11-18 01:21:18' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3qcv # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":215}' # _entry.id 3QCV # _exptl.entry_id 3QCV _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 434.504 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2R)-2-hydroxy-3-(phosphonooxy)propyl (9Z,12Z)-octadeca-9,12-dienoate' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3QCV _cell.length_a 86.98 _cell.length_b 183.131 _cell.length_c 127.498 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3QCV _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 2 2 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,E,G,H 1 1 C,D,F,I,J 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 22 H CYS 22 1_555 A SG CYS 96 H CYS 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.061 ? disulf ? disulf2 A SG CYS 149 H CYS 140 1_555 A SG CYS 205 H CYS 196 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? disulf ? disulf3 B SG CYS 23 L CYS 23 1_555 B SG CYS 93 L CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.086 ? disulf ? disulf4 B SG CYS 139 L CYS 134 1_555 B SG CYS 199 L CYS 194 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf5 C SG CYS 22 I CYS 22 1_555 C SG CYS 96 I CYS 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.059 ? disulf ? disulf6 C SG CYS 149 I CYS 140 1_555 C SG CYS 205 I CYS 196 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? disulf ? disulf7 D SG CYS 23 M CYS 23 1_555 D SG CYS 93 M CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.073 ? disulf ? disulf8 D SG CYS 139 M CYS 134 1_555 D SG CYS 199 M CYS 194 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.02 ? # _chem_comp.formula 'C21 H39 O7 P' _chem_comp.formula_weight 434.504 _chem_comp.id 18L _chem_comp.mon_nstd_flag . _chem_comp.name '(2R)-2-hydroxy-3-(phosphonooxy)propyl (9Z,12Z)-octadeca-9,12-dienoate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'D (+)-sn-1-O-linoleoyl-glyceryl-3-phosphate' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 18L sing 1 n n C1 O4 18L sing 2 n n C1 H1 18L sing 3 n n C1 H1A 18L sing 4 n n O1 P1 18L sing 5 n n O1 HO1 18L sing 6 n n O2 P1 18L doub 7 n n P1 O4 18L sing 8 n n P1 O3 18L sing 9 n n O5 C2 18L sing 10 n n C2 C3 18L sing 11 n n C2 H2 18L sing 12 n n C3 O6 18L sing 13 n n C3 H3 18L sing 14 n n C3 H3A 18L sing 15 n n O3 HO3 18L sing 16 n n O6 C4 18L sing 17 n n C4 O7 18L doub 18 n n C4 C5 18L sing 19 n n C6 C5 18L sing 20 n n C5 H5 18L sing 21 n n C5 H5A 18L sing 22 n n O5 HO5 18L sing 23 n n C6 C7 18L sing 24 n n C6 H6 18L sing 25 n n C6 H6A 18L sing 26 n n C8 C7 18L sing 27 n n C7 H7 18L sing 28 n n C7 H7A 18L sing 29 n n C8 C9 18L sing 30 n n C8 H8 18L sing 31 n n C8 H8A 18L sing 32 n n C10 C9 18L sing 33 n n C9 H9 18L sing 34 n n C9 H9A 18L sing 35 n n C10 C11 18L sing 36 n n C10 H10 18L sing 37 n n C10 H10A 18L sing 38 n n C12 C11 18L sing 39 n n C11 H11 18L sing 40 n n C11 H11A 18L sing 41 n n C13 C12 18L doub 42 n n C12 H12 18L sing 43 z n C13 C14 18L sing 44 n n C13 H13 18L sing 45 n n C15 C14 18L sing 46 n n C14 H14 18L sing 47 n n C14 H14A 18L sing 48 n n C16 C15 18L doub 49 n n C15 H15 18L sing 50 z n C17 C16 18L sing 51 n n C16 H16 18L sing 52 n n C18 C17 18L sing 53 n n C17 H17 18L sing 54 n n C17 H17A 18L sing 55 n n C19 C18 18L sing 56 n n C18 H18 18L sing 57 n n C18 H18A 18L sing 58 n n C20 C19 18L sing 59 n n C19 H19 18L sing 60 n n C19 H19A 18L sing 61 n n C21 C20 18L sing 62 n n C20 H20 18L sing 63 n n C20 H20A 18L sing 64 n n C21 H21 18L sing 65 n n C21 H21A 18L sing 66 n n C21 H21B 18L sing 67 n n # _atom_sites.entry_id 3QCV _atom_sites.fract_transf_matrix[1][1] 0.011497 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005461 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007843 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 18L H 1 215 1 18L 18L . F 3 18L I 1 215 1 18L 18L . G 4 HOH H 1 216 216 HOH HOH . G 4 HOH H 2 217 217 HOH HOH . G 4 HOH H 3 218 218 HOH HOH . G 4 HOH H 4 219 219 HOH HOH . G 4 HOH H 5 220 220 HOH HOH . G 4 HOH H 6 221 221 HOH HOH . G 4 HOH H 7 222 222 HOH HOH . G 4 HOH H 8 223 223 HOH HOH . G 4 HOH H 9 224 224 HOH HOH . G 4 HOH H 10 225 225 HOH HOH . G 4 HOH H 11 226 226 HOH HOH . G 4 HOH H 12 227 227 HOH HOH . G 4 HOH H 13 228 228 HOH HOH . G 4 HOH H 14 229 229 HOH HOH . G 4 HOH H 15 230 230 HOH HOH . G 4 HOH H 16 231 231 HOH HOH . G 4 HOH H 17 232 232 HOH HOH . G 4 HOH H 18 233 233 HOH HOH . G 4 HOH H 19 234 234 HOH HOH . G 4 HOH H 20 235 235 HOH HOH . G 4 HOH H 21 236 236 HOH HOH . G 4 HOH H 22 237 237 HOH HOH . G 4 HOH H 23 238 238 HOH HOH . G 4 HOH H 24 239 239 HOH HOH . G 4 HOH H 25 240 240 HOH HOH . G 4 HOH H 26 241 241 HOH HOH . G 4 HOH H 27 242 242 HOH HOH . G 4 HOH H 28 243 243 HOH HOH . G 4 HOH H 29 244 244 HOH HOH . G 4 HOH H 30 245 245 HOH HOH . H 4 HOH L 1 214 214 HOH HOH . H 4 HOH L 2 215 215 HOH HOH . H 4 HOH L 3 216 216 HOH HOH . H 4 HOH L 4 217 217 HOH HOH . H 4 HOH L 5 218 218 HOH HOH . H 4 HOH L 6 219 219 HOH HOH . H 4 HOH L 7 220 220 HOH HOH . H 4 HOH L 8 221 221 HOH HOH . H 4 HOH L 9 222 222 HOH HOH . H 4 HOH L 10 223 223 HOH HOH . H 4 HOH L 11 224 224 HOH HOH . H 4 HOH L 12 225 225 HOH HOH . H 4 HOH L 13 226 226 HOH HOH . H 4 HOH L 14 227 227 HOH HOH . H 4 HOH L 15 228 228 HOH HOH . H 4 HOH L 16 229 229 HOH HOH . H 4 HOH L 17 230 230 HOH HOH . H 4 HOH L 18 231 231 HOH HOH . H 4 HOH L 19 232 232 HOH HOH . H 4 HOH L 20 233 233 HOH HOH . H 4 HOH L 21 234 234 HOH HOH . H 4 HOH L 22 235 235 HOH HOH . H 4 HOH L 23 236 236 HOH HOH . H 4 HOH L 24 237 237 HOH HOH . I 4 HOH I 1 216 216 HOH HOH . I 4 HOH I 2 217 217 HOH HOH . I 4 HOH I 3 218 218 HOH HOH . I 4 HOH I 4 219 219 HOH HOH . I 4 HOH I 5 220 220 HOH HOH . I 4 HOH I 6 221 221 HOH HOH . I 4 HOH I 7 222 222 HOH HOH . I 4 HOH I 8 223 223 HOH HOH . I 4 HOH I 9 224 224 HOH HOH . I 4 HOH I 10 225 225 HOH HOH . I 4 HOH I 11 226 226 HOH HOH . I 4 HOH I 12 227 227 HOH HOH . I 4 HOH I 13 228 228 HOH HOH . I 4 HOH I 14 229 229 HOH HOH . I 4 HOH I 15 230 230 HOH HOH . I 4 HOH I 16 231 231 HOH HOH . I 4 HOH I 17 232 232 HOH HOH . I 4 HOH I 18 233 233 HOH HOH . I 4 HOH I 19 234 234 HOH HOH . I 4 HOH I 20 235 235 HOH HOH . I 4 HOH I 21 236 236 HOH HOH . I 4 HOH I 22 237 237 HOH HOH . I 4 HOH I 23 238 238 HOH HOH . I 4 HOH I 24 239 239 HOH HOH . I 4 HOH I 25 240 240 HOH HOH . I 4 HOH I 26 241 241 HOH HOH . I 4 HOH I 27 242 242 HOH HOH . J 4 HOH M 1 214 214 HOH HOH . J 4 HOH M 2 215 215 HOH HOH . J 4 HOH M 3 216 216 HOH HOH . J 4 HOH M 4 217 217 HOH HOH . J 4 HOH M 5 218 218 HOH HOH . J 4 HOH M 6 219 219 HOH HOH . J 4 HOH M 7 220 220 HOH HOH . J 4 HOH M 8 221 221 HOH HOH . J 4 HOH M 9 222 222 HOH HOH . J 4 HOH M 10 223 223 HOH HOH . J 4 HOH M 11 224 224 HOH HOH . J 4 HOH M 12 225 225 HOH HOH . J 4 HOH M 13 226 226 HOH HOH . J 4 HOH M 14 227 227 HOH HOH . J 4 HOH M 15 228 228 HOH HOH . J 4 HOH M 16 229 229 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 18L . . . E 3 -19.28 37.212 10.579 1 17.57 ? C1 18L 215 H 1 HETATM 2 O O1 18L . . . E 3 -21.221 34.893 11.129 1 16.42 ? O1 18L 215 H 1 HETATM 3 P P1 18L . . . E 3 -21.608 36.32 11.389 1 16.02 ? P1 18L 215 H 1 HETATM 4 C C2 18L . . . E 3 -18.12 38.043 11.099 1 18.44 ? C2 18L 215 H 1 HETATM 5 O O2 18L . . . E 3 -22.208 36.934 10.156 1 16.89 ? O2 18L 215 H 1 HETATM 6 C C3 18L . . . E 3 -17.564 37.45 12.381 1 18.83 ? C3 18L 215 H 1 HETATM 7 O O3 18L . . . E 3 -22.31 36.578 12.691 1 14.82 ? O3 18L 215 H 1 HETATM 8 C C4 18L . . . E 3 -15.997 38.193 14.158 1 19.46 ? C4 18L 215 H 1 HETATM 9 O O4 18L . . . E 3 -20.239 37.114 11.622 1 16.76 ? O4 18L 215 H 1 HETATM 10 C C5 18L . . . E 3 -15.391 39.375 14.895 1 19.49 ? C5 18L 215 H 1 HETATM 11 O O5 18L . . . E 3 -17.073 38.072 10.123 1 19.6 ? O5 18L 215 H 1 HETATM 12 C C6 18L . . . E 3 -15.841 40.724 14.336 1 20.29 ? C6 18L 215 H 1 HETATM 13 O O6 18L . . . E 3 -16.543 38.331 12.829 1 19.06 ? O6 18L 215 H 1 HETATM 14 C C7 18L . . . E 3 -15.219 41.896 15.087 1 21.96 ? C7 18L 215 H 1 HETATM 15 O O7 18L . . . E 3 -16.037 37.078 14.655 1 20.15 ? O7 18L 215 H 1 HETATM 16 C C8 18L . . . E 3 -15.816 43.211 14.603 1 25.79 ? C8 18L 215 H 1 HETATM 17 C C9 18L . . . E 3 -15.134 44.446 15.182 1 29.23 ? C9 18L 215 H 1 HETATM 18 C C10 18L . . . E 3 -14.985 45.557 14.137 1 32.95 ? C10 18L 215 H 1 HETATM 19 C C11 18L . . . E 3 -15.373 46.92 14.713 1 36.95 ? C11 18L 215 H 1 HETATM 20 C C12 18L . . . E 3 -14.993 48.049 13.774 1 39.43 ? C12 18L 215 H 1 HETATM 21 C C13 18L . . . E 3 -15.799 49.068 13.426 1 42.45 ? C13 18L 215 H 1 HETATM 22 C C14 18L . . . E 3 -17.235 49.294 13.879 1 44.42 ? C14 18L 215 H 1 HETATM 23 C C15 18L . . . E 3 -18.235 48.447 13.093 1 47.58 ? C15 18L 215 H 1 HETATM 24 C C16 18L . . . E 3 -19.149 48.868 12.189 1 48.88 ? C16 18L 215 H 1 HETATM 25 C C17 18L . . . E 3 -19.364 50.305 11.762 1 50.01 ? C17 18L 215 H 1 HETATM 26 C C18 18L . . . E 3 -19.135 50.44 10.254 1 51.51 ? C18 18L 215 H 1 HETATM 27 C C19 18L . . . E 3 -17.944 51.351 9.934 1 52.25 ? C19 18L 215 H 1 HETATM 28 C C20 18L . . . E 3 -18.25 52.341 8.808 1 52.75 ? C20 18L 215 H 1 HETATM 29 C C21 18L . . . E 3 -17.103 52.429 7.815 1 52.55 ? C21 18L 215 H 1 # _model_server_stats.io_time_ms 20 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 47 _model_server_stats.query_time_ms 351 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 29 #