data_3QCV # _model_server_result.job_id Tq7xRgdghHQrx-zxQWrRhg _model_server_result.datetime_utc '2025-06-20 11:56:51' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3qcv # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":215}' # _entry.id 3QCV # _exptl.entry_id 3QCV _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 434.504 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2R)-2-hydroxy-3-(phosphonooxy)propyl (9Z,12Z)-octadeca-9,12-dienoate' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3QCV _cell.length_a 86.98 _cell.length_b 183.131 _cell.length_c 127.498 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3QCV _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 2 2 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,E,G,H 1 1 C,D,F,I,J 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 22 H CYS 22 1_555 A SG CYS 96 H CYS 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.061 ? disulf ? disulf2 A SG CYS 149 H CYS 140 1_555 A SG CYS 205 H CYS 196 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? disulf ? disulf3 B SG CYS 23 L CYS 23 1_555 B SG CYS 93 L CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.086 ? disulf ? disulf4 B SG CYS 139 L CYS 134 1_555 B SG CYS 199 L CYS 194 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf5 C SG CYS 22 I CYS 22 1_555 C SG CYS 96 I CYS 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.059 ? disulf ? disulf6 C SG CYS 149 I CYS 140 1_555 C SG CYS 205 I CYS 196 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? disulf ? disulf7 D SG CYS 23 M CYS 23 1_555 D SG CYS 93 M CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.073 ? disulf ? disulf8 D SG CYS 139 M CYS 134 1_555 D SG CYS 199 M CYS 194 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.02 ? # _chem_comp.formula 'C21 H39 O7 P' _chem_comp.formula_weight 434.504 _chem_comp.id 18L _chem_comp.mon_nstd_flag . _chem_comp.name '(2R)-2-hydroxy-3-(phosphonooxy)propyl (9Z,12Z)-octadeca-9,12-dienoate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'D (+)-sn-1-O-linoleoyl-glyceryl-3-phosphate' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 18L sing 1 n n C1 O4 18L sing 2 n n C1 H1 18L sing 3 n n C1 H1A 18L sing 4 n n O1 P1 18L sing 5 n n O1 HO1 18L sing 6 n n O2 P1 18L doub 7 n n P1 O4 18L sing 8 n n P1 O3 18L sing 9 n n O5 C2 18L sing 10 n n C2 C3 18L sing 11 n n C2 H2 18L sing 12 n n C3 O6 18L sing 13 n n C3 H3 18L sing 14 n n C3 H3A 18L sing 15 n n O3 HO3 18L sing 16 n n O6 C4 18L sing 17 n n C4 O7 18L doub 18 n n C4 C5 18L sing 19 n n C6 C5 18L sing 20 n n C5 H5 18L sing 21 n n C5 H5A 18L sing 22 n n O5 HO5 18L sing 23 n n C6 C7 18L sing 24 n n C6 H6 18L sing 25 n n C6 H6A 18L sing 26 n n C8 C7 18L sing 27 n n C7 H7 18L sing 28 n n C7 H7A 18L sing 29 n n C8 C9 18L sing 30 n n C8 H8 18L sing 31 n n C8 H8A 18L sing 32 n n C10 C9 18L sing 33 n n C9 H9 18L sing 34 n n C9 H9A 18L sing 35 n n C10 C11 18L sing 36 n n C10 H10 18L sing 37 n n C10 H10A 18L sing 38 n n C12 C11 18L sing 39 n n C11 H11 18L sing 40 n n C11 H11A 18L sing 41 n n C13 C12 18L doub 42 n n C12 H12 18L sing 43 z n C13 C14 18L sing 44 n n C13 H13 18L sing 45 n n C15 C14 18L sing 46 n n C14 H14 18L sing 47 n n C14 H14A 18L sing 48 n n C16 C15 18L doub 49 n n C15 H15 18L sing 50 z n C17 C16 18L sing 51 n n C16 H16 18L sing 52 n n C18 C17 18L sing 53 n n C17 H17 18L sing 54 n n C17 H17A 18L sing 55 n n C19 C18 18L sing 56 n n C18 H18 18L sing 57 n n C18 H18A 18L sing 58 n n C20 C19 18L sing 59 n n C19 H19 18L sing 60 n n C19 H19A 18L sing 61 n n C21 C20 18L sing 62 n n C20 H20 18L sing 63 n n C20 H20A 18L sing 64 n n C21 H21 18L sing 65 n n C21 H21A 18L sing 66 n n C21 H21B 18L sing 67 n n # _atom_sites.entry_id 3QCV _atom_sites.fract_transf_matrix[1][1] 0.011497 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005461 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007843 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 18L H 1 215 1 18L 18L . F 3 18L I 1 215 1 18L 18L . G 4 HOH H 1 216 216 HOH HOH . G 4 HOH H 2 217 217 HOH HOH . G 4 HOH H 3 218 218 HOH HOH . G 4 HOH H 4 219 219 HOH HOH . G 4 HOH H 5 220 220 HOH HOH . G 4 HOH H 6 221 221 HOH HOH . G 4 HOH H 7 222 222 HOH HOH . G 4 HOH H 8 223 223 HOH HOH . G 4 HOH H 9 224 224 HOH HOH . G 4 HOH H 10 225 225 HOH HOH . G 4 HOH H 11 226 226 HOH HOH . G 4 HOH H 12 227 227 HOH HOH . G 4 HOH H 13 228 228 HOH HOH . G 4 HOH H 14 229 229 HOH HOH . G 4 HOH H 15 230 230 HOH HOH . G 4 HOH H 16 231 231 HOH HOH . G 4 HOH H 17 232 232 HOH HOH . G 4 HOH H 18 233 233 HOH HOH . G 4 HOH H 19 234 234 HOH HOH . G 4 HOH H 20 235 235 HOH HOH . G 4 HOH H 21 236 236 HOH HOH . G 4 HOH H 22 237 237 HOH HOH . G 4 HOH H 23 238 238 HOH HOH . G 4 HOH H 24 239 239 HOH HOH . G 4 HOH H 25 240 240 HOH HOH . G 4 HOH H 26 241 241 HOH HOH . G 4 HOH H 27 242 242 HOH HOH . G 4 HOH H 28 243 243 HOH HOH . G 4 HOH H 29 244 244 HOH HOH . G 4 HOH H 30 245 245 HOH HOH . H 4 HOH L 1 214 214 HOH HOH . H 4 HOH L 2 215 215 HOH HOH . H 4 HOH L 3 216 216 HOH HOH . H 4 HOH L 4 217 217 HOH HOH . H 4 HOH L 5 218 218 HOH HOH . H 4 HOH L 6 219 219 HOH HOH . H 4 HOH L 7 220 220 HOH HOH . H 4 HOH L 8 221 221 HOH HOH . H 4 HOH L 9 222 222 HOH HOH . H 4 HOH L 10 223 223 HOH HOH . H 4 HOH L 11 224 224 HOH HOH . H 4 HOH L 12 225 225 HOH HOH . H 4 HOH L 13 226 226 HOH HOH . H 4 HOH L 14 227 227 HOH HOH . H 4 HOH L 15 228 228 HOH HOH . H 4 HOH L 16 229 229 HOH HOH . H 4 HOH L 17 230 230 HOH HOH . H 4 HOH L 18 231 231 HOH HOH . H 4 HOH L 19 232 232 HOH HOH . H 4 HOH L 20 233 233 HOH HOH . H 4 HOH L 21 234 234 HOH HOH . H 4 HOH L 22 235 235 HOH HOH . H 4 HOH L 23 236 236 HOH HOH . H 4 HOH L 24 237 237 HOH HOH . I 4 HOH I 1 216 216 HOH HOH . I 4 HOH I 2 217 217 HOH HOH . I 4 HOH I 3 218 218 HOH HOH . I 4 HOH I 4 219 219 HOH HOH . I 4 HOH I 5 220 220 HOH HOH . I 4 HOH I 6 221 221 HOH HOH . I 4 HOH I 7 222 222 HOH HOH . I 4 HOH I 8 223 223 HOH HOH . I 4 HOH I 9 224 224 HOH HOH . I 4 HOH I 10 225 225 HOH HOH . I 4 HOH I 11 226 226 HOH HOH . I 4 HOH I 12 227 227 HOH HOH . I 4 HOH I 13 228 228 HOH HOH . I 4 HOH I 14 229 229 HOH HOH . I 4 HOH I 15 230 230 HOH HOH . I 4 HOH I 16 231 231 HOH HOH . I 4 HOH I 17 232 232 HOH HOH . I 4 HOH I 18 233 233 HOH HOH . I 4 HOH I 19 234 234 HOH HOH . I 4 HOH I 20 235 235 HOH HOH . I 4 HOH I 21 236 236 HOH HOH . I 4 HOH I 22 237 237 HOH HOH . I 4 HOH I 23 238 238 HOH HOH . I 4 HOH I 24 239 239 HOH HOH . I 4 HOH I 25 240 240 HOH HOH . I 4 HOH I 26 241 241 HOH HOH . I 4 HOH I 27 242 242 HOH HOH . J 4 HOH M 1 214 214 HOH HOH . J 4 HOH M 2 215 215 HOH HOH . J 4 HOH M 3 216 216 HOH HOH . J 4 HOH M 4 217 217 HOH HOH . J 4 HOH M 5 218 218 HOH HOH . J 4 HOH M 6 219 219 HOH HOH . J 4 HOH M 7 220 220 HOH HOH . J 4 HOH M 8 221 221 HOH HOH . J 4 HOH M 9 222 222 HOH HOH . J 4 HOH M 10 223 223 HOH HOH . J 4 HOH M 11 224 224 HOH HOH . J 4 HOH M 12 225 225 HOH HOH . J 4 HOH M 13 226 226 HOH HOH . J 4 HOH M 14 227 227 HOH HOH . J 4 HOH M 15 228 228 HOH HOH . J 4 HOH M 16 229 229 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 18L . . . F 3 25.449 31.548 -11.303 1 19.76 ? C1 18L 215 I 1 HETATM 2 O O1 18L . . . F 3 26.979 28.73 -11.273 1 21.2 ? O1 18L 215 I 1 HETATM 3 P P1 18L . . . F 3 27.604 30.051 -11.656 1 23.12 ? P1 18L 215 I 1 HETATM 4 C C2 18L . . . F 3 24.325 32.196 -12.102 1 19.11 ? C2 18L 215 I 1 HETATM 5 O O2 18L . . . F 3 28.221 30.798 -10.501 1 22.11 ? O2 18L 215 I 1 HETATM 6 C C3 18L . . . F 3 23.747 31.22 -13.123 1 19.84 ? C3 18L 215 I 1 HETATM 7 O O3 18L . . . F 3 28.483 29.997 -12.884 1 24.03 ? O3 18L 215 I 1 HETATM 8 C C4 18L . . . F 3 22.216 31.509 -15.105 1 21.54 ? C4 18L 215 I 1 HETATM 9 O O4 18L . . . F 3 26.404 30.985 -12.192 1 20.88 ? O4 18L 215 I 1 HETATM 10 C C5 18L . . . F 3 21.781 32.517 -16.132 1 24.02 ? C5 18L 215 I 1 HETATM 11 O O5 18L . . . F 3 23.268 32.626 -11.227 1 17.8 ? O5 18L 215 I 1 HETATM 12 C C6 18L . . . F 3 22.471 33.865 -15.948 1 26.66 ? C6 18L 215 I 1 HETATM 13 O O6 18L . . . F 3 22.762 31.953 -13.846 1 21.03 ? O6 18L 215 I 1 HETATM 14 C C7 18L . . . F 3 21.666 34.969 -16.626 1 27.87 ? C7 18L 215 I 1 HETATM 15 O O7 18L . . . F 3 22.1 30.313 -15.311 1 22.39 ? O7 18L 215 I 1 HETATM 16 C C8 18L . . . F 3 22.461 36.246 -16.899 1 30.34 ? C8 18L 215 I 1 HETATM 17 C C9 18L . . . F 3 21.696 37.131 -17.886 1 31.69 ? C9 18L 215 I 1 HETATM 18 C C10 18L . . . F 3 22.392 38.436 -18.233 1 34.58 ? C10 18L 215 I 1 HETATM 19 C C11 18L . . . F 3 22.016 39.551 -17.256 1 39.02 ? C11 18L 215 I 1 HETATM 20 C C12 18L . . . F 3 21.898 40.86 -18.018 1 42.34 ? C12 18L 215 I 1 HETATM 21 C C13 18L . . . F 3 22.455 42.042 -17.702 1 44.02 ? C13 18L 215 I 1 HETATM 22 C C14 18L . . . F 3 23.328 42.333 -16.499 1 46.05 ? C14 18L 215 I 1 HETATM 23 C C15 18L . . . F 3 24.792 42.348 -16.916 1 48.07 ? C15 18L 215 I 1 HETATM 24 C C16 18L . . . F 3 25.54 43.458 -17.059 1 48.19 ? C16 18L 215 I 1 HETATM 25 C C17 18L . . . F 3 25.027 44.871 -16.847 1 47.25 ? C17 18L 215 I 1 HETATM 26 C C18 18L . . . F 3 25.449 45.745 -18.027 1 46.09 ? C18 18L 215 I 1 HETATM 27 C C19 18L . . . F 3 24.544 45.562 -19.243 1 45.59 ? C19 18L 215 I 1 HETATM 28 C C20 18L . . . F 3 23.913 46.879 -19.679 1 45.29 ? C20 18L 215 I 1 HETATM 29 C C21 18L . . . F 3 22.48 46.672 -20.122 1 45.05 ? C21 18L 215 I 1 # _model_server_stats.io_time_ms 38 _model_server_stats.parse_time_ms 80 _model_server_stats.create_model_time_ms 77 _model_server_stats.query_time_ms 325 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 29 #