data_3QCX # _model_server_result.job_id i7LGKTtzUCZe-0aW0Spi8g _model_server_result.datetime_utc '2024-11-30 06:11:18' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3qcx # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":365}' # _entry.id 3QCX # _exptl.entry_id 3QCX _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3QCX _cell.length_a 123.352 _cell.length_b 123.352 _cell.length_c 46.963 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3QCX _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N ? 2 D N N ? 2 E N N ? 2 M N N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id C _struct_conn.ptnr1_label_comp_id SEP _struct_conn.ptnr1_label_seq_id 194 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id SEP _struct_conn.ptnr1_auth_seq_id 241 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id A _struct_conn.ptnr2_label_atom_id N _struct_conn.ptnr2_label_comp_id PHE _struct_conn.ptnr2_label_seq_id 195 _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id PHE _struct_conn.ptnr2_auth_seq_id 242 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.333 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 175 n n C1 C2 GOL sing 176 n n C1 H11 GOL sing 177 n n C1 H12 GOL sing 178 n n O1 HO1 GOL sing 179 n n C2 O2 GOL sing 180 n n C2 C3 GOL sing 181 n n C2 H2 GOL sing 182 n n O2 HO2 GOL sing 183 n n C3 O3 GOL sing 184 n n C3 H31 GOL sing 185 n n C3 H32 GOL sing 186 n n O3 HO3 GOL sing 187 n n # _atom_sites.entry_id 3QCX _atom_sites.fract_transf_matrix[1][1] 0.008107 _atom_sites.fract_transf_matrix[1][2] 0.004681 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009361 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.021293 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GOL A 1 360 359 GOL GOL . C 2 GOL A 1 361 360 GOL GOL . D 2 GOL A 1 363 363 GOL GOL . E 2 GOL A 1 365 365 GOL GOL . F 3 SO4 A 1 366 366 SO4 SO4 . G 3 SO4 A 1 368 368 SO4 SO4 . H 3 SO4 A 1 369 369 SO4 SO4 . I 3 SO4 A 1 1 1 SO4 SO4 . J 3 SO4 A 1 2 2 SO4 SO4 . K 3 SO4 A 1 3 3 SO4 SO4 . L 4 3Q2 A 1 370 370 3Q2 3Q2 . M 2 GOL A 1 362 360 GOL GOL . N 5 HOH A 1 5 5 HOH HOH . N 5 HOH A 2 6 6 HOH HOH . N 5 HOH A 3 7 7 HOH HOH . N 5 HOH A 4 10 10 HOH HOH . N 5 HOH A 5 17 17 HOH HOH . N 5 HOH A 6 18 18 HOH HOH . N 5 HOH A 7 19 19 HOH HOH . N 5 HOH A 8 27 27 HOH HOH . N 5 HOH A 9 30 30 HOH HOH . N 5 HOH A 10 35 35 HOH HOH . N 5 HOH A 11 36 36 HOH HOH . N 5 HOH A 12 40 40 HOH HOH . N 5 HOH A 13 43 43 HOH HOH . N 5 HOH A 14 44 44 HOH HOH . N 5 HOH A 15 45 45 HOH HOH . N 5 HOH A 16 46 46 HOH HOH . N 5 HOH A 17 47 47 HOH HOH . N 5 HOH A 18 364 2 HOH HOH . N 5 HOH A 19 367 3 HOH HOH . N 5 HOH A 20 371 48 HOH HOH . N 5 HOH A 21 372 51 HOH HOH . N 5 HOH A 22 373 52 HOH HOH . N 5 HOH A 23 374 53 HOH HOH . N 5 HOH A 24 375 55 HOH HOH . N 5 HOH A 25 376 56 HOH HOH . N 5 HOH A 26 377 57 HOH HOH . N 5 HOH A 27 378 58 HOH HOH . N 5 HOH A 28 379 60 HOH HOH . N 5 HOH A 29 380 62 HOH HOH . N 5 HOH A 30 381 65 HOH HOH . N 5 HOH A 31 382 66 HOH HOH . N 5 HOH A 32 383 68 HOH HOH . N 5 HOH A 33 384 69 HOH HOH . N 5 HOH A 34 385 71 HOH HOH . N 5 HOH A 35 386 72 HOH HOH . N 5 HOH A 36 387 76 HOH HOH . N 5 HOH A 37 388 77 HOH HOH . N 5 HOH A 38 389 78 HOH HOH . N 5 HOH A 39 390 81 HOH HOH . N 5 HOH A 40 391 82 HOH HOH . N 5 HOH A 41 392 83 HOH HOH . N 5 HOH A 42 393 87 HOH HOH . N 5 HOH A 43 394 89 HOH HOH . N 5 HOH A 44 395 91 HOH HOH . N 5 HOH A 45 396 92 HOH HOH . N 5 HOH A 46 397 93 HOH HOH . N 5 HOH A 47 398 94 HOH HOH . N 5 HOH A 48 399 95 HOH HOH . N 5 HOH A 49 400 96 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . E 2 -38.448 5.238 -5.206 1 38.36 ? C1 GOL 365 A 1 HETATM 2 O O1 GOL . . . E 2 -37.206 4.616 -5.04 1 43.16 ? O1 GOL 365 A 1 HETATM 3 C C2 GOL . . . E 2 -38.41 6.231 -6.362 1 43.52 ? C2 GOL 365 A 1 HETATM 4 O O2 GOL . . . E 2 -37.206 6.262 -7.106 1 46.81 ? O2 GOL 365 A 1 HETATM 5 C C3 GOL . . . E 2 -39.594 5.978 -7.271 1 47.44 ? C3 GOL 365 A 1 HETATM 6 O O3 GOL . . . E 2 -40.523 6.958 -6.898 1 40.87 ? O3 GOL 365 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 305 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 6 #