data_3QD0 # _model_server_result.job_id 0adNwzU91VjwThOkSGAbiA _model_server_result.datetime_utc '2024-11-30 07:34:05' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3qd0 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":370}' # _entry.id 3QD0 # _exptl.entry_id 3QD0 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 442.516 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (3S,6R)-1-[2-amino-6-(3-amino-2H-indazol-6-yl)pyrimidin-4-yl]-6-methyl-N-phenylpiperidine-3-carboxamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3QD0 _cell.length_a 123.943 _cell.length_b 123.943 _cell.length_c 46.987 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3QD0 _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id I _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C24 H26 N8 O' _chem_comp.formula_weight 442.516 _chem_comp.id 3Q4 _chem_comp.mon_nstd_flag . _chem_comp.name (3S,6R)-1-[2-amino-6-(3-amino-2H-indazol-6-yl)pyrimidin-4-yl]-6-methyl-N-phenylpiperidine-3-carboxamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C2 C1 3Q4 doub 1 n y C1 C3 3Q4 sing 2 n y C1 H1 3Q4 sing 3 n n C2 C6 3Q4 sing 4 n y C2 H2 3Q4 sing 5 n n C3 C7 3Q4 doub 6 n y C3 H3 3Q4 sing 7 n n C5 C4 3Q4 doub 8 n y C10 C4 3Q4 sing 9 n y C4 H4 3Q4 sing 10 n n C11 C5 3Q4 sing 11 n y C5 H5 3Q4 sing 12 n n C6 C13 3Q4 doub 13 n y C6 H6 3Q4 sing 14 n n C13 C7 3Q4 sing 15 n y C7 H7 3Q4 sing 16 n n C8 C11 3Q4 doub 17 n y C8 C12 3Q4 sing 18 n y C8 H8 3Q4 sing 19 n n C15 C9 3Q4 doub 20 n y C14 C9 3Q4 sing 21 n y C9 H9 3Q4 sing 22 n n C12 C10 3Q4 sing 23 n y C10 C16 3Q4 doub 24 n y C14 C11 3Q4 sing 25 n y N28 C12 3Q4 doub 26 n y C13 N32 3Q4 sing 27 n n N25 C14 3Q4 doub 28 n y N26 C15 3Q4 sing 29 n y C15 N29 3Q4 sing 30 n n N27 C16 3Q4 sing 31 n y C16 N30 3Q4 sing 32 n n N31 C17 3Q4 sing 33 n n C17 N26 3Q4 doub 34 n y C17 N25 3Q4 sing 35 n y N32 C18 3Q4 sing 36 n n C18 C22 3Q4 sing 37 n n C18 O33 3Q4 doub 38 n n C22 C19 3Q4 sing 39 n n C19 C20 3Q4 sing 40 n n C19 H19 3Q4 sing 41 n n C19 H19A 3Q4 sing 42 n n C20 C23 3Q4 sing 43 n n C20 H20 3Q4 sing 44 n n C20 H20A 3Q4 sing 45 n n C22 C21 3Q4 sing 46 n n C21 N29 3Q4 sing 47 n n C21 H21 3Q4 sing 48 n n C21 H21A 3Q4 sing 49 n n C22 H22 3Q4 sing 50 n n N29 C23 3Q4 sing 51 n n C23 C24 3Q4 sing 52 n n C23 H23 3Q4 sing 53 n n C24 H24 3Q4 sing 54 n n C24 H24A 3Q4 sing 55 n n C24 H24B 3Q4 sing 56 n n N28 N27 3Q4 sing 57 n y N30 HN30 3Q4 sing 58 n n N30 HN3A 3Q4 sing 59 n n N31 HN31 3Q4 sing 60 n n N31 HN3B 3Q4 sing 61 n n N32 HN32 3Q4 sing 62 n n N27 HN27 3Q4 sing 63 n n # _atom_sites.entry_id 3QD0 _atom_sites.fract_transf_matrix[1][1] 0.008068 _atom_sites.fract_transf_matrix[1][2] 0.004658 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009316 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.021282 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GOL A 1 360 359 GOL GOL . C 2 GOL A 1 361 360 GOL GOL . D 2 GOL A 1 363 363 GOL GOL . E 2 GOL A 1 365 365 GOL GOL . F 3 SO4 A 1 366 366 SO4 SO4 . G 3 SO4 A 1 368 368 SO4 SO4 . H 3 SO4 A 1 369 369 SO4 SO4 . I 4 3Q4 A 1 370 370 3Q4 3Q4 . J 3 SO4 A 1 1 1 SO4 SO4 . K 3 SO4 A 1 2 2 SO4 SO4 . L 2 GOL A 1 362 360 GOL GOL . M 5 HOH A 1 3 3 HOH HOH . M 5 HOH A 2 5 5 HOH HOH . M 5 HOH A 3 6 6 HOH HOH . M 5 HOH A 4 7 7 HOH HOH . M 5 HOH A 5 10 10 HOH HOH . M 5 HOH A 6 17 17 HOH HOH . M 5 HOH A 7 18 18 HOH HOH . M 5 HOH A 8 19 19 HOH HOH . M 5 HOH A 9 27 27 HOH HOH . M 5 HOH A 10 30 30 HOH HOH . M 5 HOH A 11 33 33 HOH HOH . M 5 HOH A 12 34 34 HOH HOH . M 5 HOH A 13 35 35 HOH HOH . M 5 HOH A 14 36 36 HOH HOH . M 5 HOH A 15 40 40 HOH HOH . M 5 HOH A 16 43 43 HOH HOH . M 5 HOH A 17 44 44 HOH HOH . M 5 HOH A 18 45 45 HOH HOH . M 5 HOH A 19 46 46 HOH HOH . M 5 HOH A 20 47 47 HOH HOH . M 5 HOH A 21 364 2 HOH HOH . M 5 HOH A 22 367 48 HOH HOH . M 5 HOH A 23 371 49 HOH HOH . M 5 HOH A 24 372 51 HOH HOH . M 5 HOH A 25 373 52 HOH HOH . M 5 HOH A 26 374 53 HOH HOH . M 5 HOH A 27 375 54 HOH HOH . M 5 HOH A 28 376 55 HOH HOH . M 5 HOH A 29 377 56 HOH HOH . M 5 HOH A 30 378 57 HOH HOH . M 5 HOH A 31 379 58 HOH HOH . M 5 HOH A 32 380 59 HOH HOH . M 5 HOH A 33 381 60 HOH HOH . M 5 HOH A 34 382 61 HOH HOH . M 5 HOH A 35 383 62 HOH HOH . M 5 HOH A 36 384 63 HOH HOH . M 5 HOH A 37 385 64 HOH HOH . M 5 HOH A 38 386 65 HOH HOH . M 5 HOH A 39 387 66 HOH HOH . M 5 HOH A 40 388 67 HOH HOH . M 5 HOH A 41 389 68 HOH HOH . M 5 HOH A 42 390 69 HOH HOH . M 5 HOH A 43 391 70 HOH HOH . M 5 HOH A 44 392 71 HOH HOH . M 5 HOH A 45 393 72 HOH HOH . M 5 HOH A 46 394 73 HOH HOH . M 5 HOH A 47 395 74 HOH HOH . M 5 HOH A 48 396 75 HOH HOH . M 5 HOH A 49 397 76 HOH HOH . M 5 HOH A 50 398 77 HOH HOH . M 5 HOH A 51 399 78 HOH HOH . M 5 HOH A 52 400 79 HOH HOH . M 5 HOH A 53 401 81 HOH HOH . M 5 HOH A 54 402 82 HOH HOH . M 5 HOH A 55 403 83 HOH HOH . M 5 HOH A 56 404 84 HOH HOH . M 5 HOH A 57 405 85 HOH HOH . M 5 HOH A 58 406 86 HOH HOH . M 5 HOH A 59 407 87 HOH HOH . M 5 HOH A 60 408 88 HOH HOH . M 5 HOH A 61 409 89 HOH HOH . M 5 HOH A 62 410 93 HOH HOH . M 5 HOH A 63 411 94 HOH HOH . M 5 HOH A 64 412 95 HOH HOH . M 5 HOH A 65 413 96 HOH HOH . M 5 HOH A 66 414 97 HOH HOH . M 5 HOH A 67 415 98 HOH HOH . M 5 HOH A 68 416 99 HOH HOH . M 5 HOH A 69 417 100 HOH HOH . M 5 HOH A 70 418 101 HOH HOH . M 5 HOH A 71 419 102 HOH HOH . M 5 HOH A 72 420 103 HOH HOH . M 5 HOH A 73 421 104 HOH HOH . M 5 HOH A 74 422 105 HOH HOH . M 5 HOH A 75 423 106 HOH HOH . M 5 HOH A 76 424 107 HOH HOH . M 5 HOH A 77 425 108 HOH HOH . M 5 HOH A 78 426 109 HOH HOH . M 5 HOH A 79 427 110 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 3Q4 . . . I 4 -52.855 24.713 9.169 1 32.44 ? C1 3Q4 370 A 1 HETATM 2 C C2 3Q4 . . . I 4 -52.249 23.8 8.329 1 28.31 ? C2 3Q4 370 A 1 HETATM 3 C C3 3Q4 . . . I 4 -52.182 25.164 10.288 1 29.61 ? C3 3Q4 370 A 1 HETATM 4 C C4 3Q4 . . . I 4 -40.802 16.482 13.044 1 20.83 ? C4 3Q4 370 A 1 HETATM 5 C C5 3Q4 . . . I 4 -42 17.091 12.704 1 19.21 ? C5 3Q4 370 A 1 HETATM 6 C C6 3Q4 . . . I 4 -50.979 23.336 8.611 1 24.85 ? C6 3Q4 370 A 1 HETATM 7 C C7 3Q4 . . . I 4 -50.913 24.703 10.574 1 28.25 ? C7 3Q4 370 A 1 HETATM 8 C C8 3Q4 . . . I 4 -43.019 15.087 11.911 1 18.29 ? C8 3Q4 370 A 1 HETATM 9 C C9 3Q4 . . . I 4 -44.549 18.519 12.056 1 19.19 ? C9 3Q4 370 A 1 HETATM 10 C C10 3Q4 . . . I 4 -40.719 15.108 12.798 1 18.26 ? C10 3Q4 370 A 1 HETATM 11 C C11 3Q4 . . . I 4 -43.101 16.452 12.141 1 20.2 ? C11 3Q4 370 A 1 HETATM 12 C C12 3Q4 . . . I 4 -41.826 14.476 12.257 1 18.94 ? C12 3Q4 370 A 1 HETATM 13 C C13 3Q4 . . . I 4 -50.316 23.784 9.734 1 27.96 ? C13 3Q4 370 A 1 HETATM 14 C C14 3Q4 . . . I 4 -44.332 17.186 11.752 1 18.84 ? C14 3Q4 370 A 1 HETATM 15 C C15 3Q4 . . . I 4 -45.75 19.117 11.686 1 19.81 ? C15 3Q4 370 A 1 HETATM 16 C C16 3Q4 . . . I 4 -39.737 14.081 12.955 1 20.18 ? C16 3Q4 370 A 1 HETATM 17 C C17 3Q4 . . . I 4 -46.421 17.112 10.765 1 19.22 ? C17 3Q4 370 A 1 HETATM 18 C C18 3Q4 . . . I 4 -48.525 23.118 11.257 1 25.88 ? C18 3Q4 370 A 1 HETATM 19 C C19 3Q4 . . . I 4 -46.351 23.249 12.395 1 23.58 ? C19 3Q4 370 A 1 HETATM 20 C C20 3Q4 . . . I 4 -44.982 22.612 12.635 1 25.88 ? C20 3Q4 370 A 1 HETATM 21 C C21 3Q4 . . . I 4 -47.321 21.052 11.832 1 20.61 ? C21 3Q4 370 A 1 HETATM 22 C C22 3Q4 . . . I 4 -47.151 22.481 11.336 1 21.9 ? C22 3Q4 370 A 1 HETATM 23 C C23 3Q4 . . . I 4 -45.093 21.129 12.998 1 21.43 ? C23 3Q4 370 A 1 HETATM 24 C C24 3Q4 . . . I 4 -45.576 20.98 14.418 1 22.47 ? C24 3Q4 370 A 1 HETATM 25 N N25 3Q4 . . . I 4 -45.277 16.485 11.105 1 17.64 ? N25 3Q4 370 A 1 HETATM 26 N N26 3Q4 . . . I 4 -46.681 18.402 11.039 1 19.86 ? N26 3Q4 370 A 1 HETATM 27 N N27 3Q4 . . . I 4 -40.211 12.899 12.527 1 18.65 ? N27 3Q4 370 A 1 HETATM 28 N N28 3Q4 . . . I 4 -41.459 13.168 12.12 1 17.92 ? N28 3Q4 370 A 1 HETATM 29 N N29 3Q4 . . . I 4 -45.962 20.517 11.976 1 21.84 ? N29 3Q4 370 A 1 HETATM 30 N N30 3Q4 . . . I 4 -38.479 14.272 13.466 1 18.49 ? N30 3Q4 370 A 1 HETATM 31 N N31 3Q4 . . . I 4 -47.417 16.39 10.088 1 18.47 ? N31 3Q4 370 A 1 HETATM 32 N N32 3Q4 . . . I 4 -49.026 23.296 9.989 1 22.06 ? N32 3Q4 370 A 1 HETATM 33 O O33 3Q4 . . . I 4 -49.133 23.409 12.265 1 27.03 ? O33 3Q4 370 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 318 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 33 #