data_3QD3 # _model_server_result.job_id G276Zqvxd_sXNfXcwS8gxQ _model_server_result.datetime_utc '2024-11-07 10:00:15' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3qd3 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":360}' # _entry.id 3QD3 # _exptl.entry_id 3QD3 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 438.526 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'tert-butyl {(3R,6S)-1-[2-amino-6-(3-amino-2H-indazol-6-yl)pyrimidin-4-yl]-6-methylpiperidin-3-yl}carbamate' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3QD3 _cell.length_a 123.533 _cell.length_b 123.533 _cell.length_c 46.87 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3QD3 _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id C _struct_conn.ptnr1_label_comp_id SEP _struct_conn.ptnr1_label_seq_id 194 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id SEP _struct_conn.ptnr1_auth_seq_id 241 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id A _struct_conn.ptnr2_label_atom_id N _struct_conn.ptnr2_label_comp_id PHE _struct_conn.ptnr2_label_seq_id 195 _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id PHE _struct_conn.ptnr2_auth_seq_id 242 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.331 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C22 H30 N8 O2' _chem_comp.formula_weight 438.526 _chem_comp.id 3Q5 _chem_comp.mon_nstd_flag . _chem_comp.name 'tert-butyl {(3R,6S)-1-[2-amino-6-(3-amino-2H-indazol-6-yl)pyrimidin-4-yl]-6-methylpiperidin-3-yl}carbamate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C2 C1 3Q5 doub 1 n y C5 C1 3Q5 sing 2 n y C1 H1 3Q5 sing 3 n n C6 C2 3Q5 sing 4 n y C2 H2 3Q5 sing 5 n n C3 C6 3Q5 doub 6 n y C3 C7 3Q5 sing 7 n y C3 H3 3Q5 sing 8 n n C8 C4 3Q5 doub 9 n y C9 C4 3Q5 sing 10 n y C4 H4 3Q5 sing 11 n n C7 C5 3Q5 sing 12 n y C5 C10 3Q5 doub 13 n y C8 C6 3Q5 sing 14 n y N26 C7 3Q5 doub 15 n y N23 C8 3Q5 sing 16 n y N24 C9 3Q5 doub 17 n y C9 N27 3Q5 sing 18 n n N25 C10 3Q5 sing 19 n y C10 N28 3Q5 sing 20 n n N29 C11 3Q5 sing 21 n n C11 N23 3Q5 doub 22 n y C11 N24 3Q5 sing 23 n y O32 C12 3Q5 sing 24 n n N30 C12 3Q5 sing 25 n n C12 O31 3Q5 doub 26 n n C16 C13 3Q5 sing 27 n n C13 C14 3Q5 sing 28 n n C13 H13 3Q5 sing 29 n n C13 H13A 3Q5 sing 30 n n C17 C14 3Q5 sing 31 n n C14 H14 3Q5 sing 32 n n C14 H14A 3Q5 sing 33 n n C15 N27 3Q5 sing 34 n n C15 C16 3Q5 sing 35 n n C15 H15 3Q5 sing 36 n n C15 H15A 3Q5 sing 37 n n N30 C16 3Q5 sing 38 n n C16 H16 3Q5 sing 39 n n C18 C17 3Q5 sing 40 n n N27 C17 3Q5 sing 41 n n C17 H17 3Q5 sing 42 n n C18 H18 3Q5 sing 43 n n C18 H18A 3Q5 sing 44 n n C18 H18B 3Q5 sing 45 n n C22 C19 3Q5 sing 46 n n C19 H19 3Q5 sing 47 n n C19 H19A 3Q5 sing 48 n n C19 H19B 3Q5 sing 49 n n C20 C22 3Q5 sing 50 n n C20 H20 3Q5 sing 51 n n C20 H20A 3Q5 sing 52 n n C20 H20B 3Q5 sing 53 n n C21 C22 3Q5 sing 54 n n C21 H21 3Q5 sing 55 n n C21 H21A 3Q5 sing 56 n n C21 H21B 3Q5 sing 57 n n O32 C22 3Q5 sing 58 n n N26 N25 3Q5 sing 59 n y N28 HN28 3Q5 sing 60 n n N28 HN2A 3Q5 sing 61 n n N29 HN29 3Q5 sing 62 n n N29 HN2B 3Q5 sing 63 n n N30 HN30 3Q5 sing 64 n n N25 HN25 3Q5 sing 65 n n # _atom_sites.entry_id 3QD3 _atom_sites.fract_transf_matrix[1][1] 0.008095 _atom_sites.fract_transf_matrix[1][2] 0.004674 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009347 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.021336 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 3Q5 A 1 360 360 3Q5 3Q5 . C 3 SO4 A 1 1 1 SO4 SO4 . D 4 GOL A 1 361 1 GOL GOL . E 4 GOL A 1 362 1 GOL GOL . F 5 HOH A 1 2 2 HOH HOH . F 5 HOH A 2 3 3 HOH HOH . F 5 HOH A 3 4 4 HOH HOH . F 5 HOH A 4 5 5 HOH HOH . F 5 HOH A 5 6 6 HOH HOH . F 5 HOH A 6 7 7 HOH HOH . F 5 HOH A 7 8 8 HOH HOH . F 5 HOH A 8 9 9 HOH HOH . F 5 HOH A 9 10 10 HOH HOH . F 5 HOH A 10 11 11 HOH HOH . F 5 HOH A 11 12 12 HOH HOH . F 5 HOH A 12 13 13 HOH HOH . F 5 HOH A 13 14 14 HOH HOH . F 5 HOH A 14 15 15 HOH HOH . F 5 HOH A 15 16 16 HOH HOH . F 5 HOH A 16 17 17 HOH HOH . F 5 HOH A 17 18 18 HOH HOH . F 5 HOH A 18 19 19 HOH HOH . F 5 HOH A 19 20 20 HOH HOH . F 5 HOH A 20 21 21 HOH HOH . F 5 HOH A 21 22 22 HOH HOH . F 5 HOH A 22 23 23 HOH HOH . F 5 HOH A 23 24 24 HOH HOH . F 5 HOH A 24 25 25 HOH HOH . F 5 HOH A 25 26 26 HOH HOH . F 5 HOH A 26 27 27 HOH HOH . F 5 HOH A 27 28 28 HOH HOH . F 5 HOH A 28 29 29 HOH HOH . F 5 HOH A 29 30 30 HOH HOH . F 5 HOH A 30 31 31 HOH HOH . F 5 HOH A 31 32 32 HOH HOH . F 5 HOH A 32 33 33 HOH HOH . F 5 HOH A 33 34 34 HOH HOH . F 5 HOH A 34 35 35 HOH HOH . F 5 HOH A 35 36 36 HOH HOH . F 5 HOH A 36 37 37 HOH HOH . F 5 HOH A 37 38 38 HOH HOH . F 5 HOH A 38 39 39 HOH HOH . F 5 HOH A 39 40 40 HOH HOH . F 5 HOH A 40 41 41 HOH HOH . F 5 HOH A 41 42 42 HOH HOH . F 5 HOH A 42 43 43 HOH HOH . F 5 HOH A 43 44 44 HOH HOH . F 5 HOH A 44 45 45 HOH HOH . F 5 HOH A 45 46 46 HOH HOH . F 5 HOH A 46 47 47 HOH HOH . F 5 HOH A 47 363 1 HOH HOH . F 5 HOH A 48 364 48 HOH HOH . F 5 HOH A 49 365 49 HOH HOH . F 5 HOH A 50 366 50 HOH HOH . F 5 HOH A 51 367 51 HOH HOH . F 5 HOH A 52 368 52 HOH HOH . F 5 HOH A 53 369 53 HOH HOH . F 5 HOH A 54 370 54 HOH HOH . F 5 HOH A 55 371 55 HOH HOH . F 5 HOH A 56 372 56 HOH HOH . F 5 HOH A 57 373 57 HOH HOH . F 5 HOH A 58 374 58 HOH HOH . F 5 HOH A 59 375 59 HOH HOH . F 5 HOH A 60 376 60 HOH HOH . F 5 HOH A 61 377 61 HOH HOH . F 5 HOH A 62 378 62 HOH HOH . F 5 HOH A 63 379 63 HOH HOH . F 5 HOH A 64 380 64 HOH HOH . F 5 HOH A 65 381 65 HOH HOH . F 5 HOH A 66 382 66 HOH HOH . F 5 HOH A 67 383 67 HOH HOH . F 5 HOH A 68 384 68 HOH HOH . F 5 HOH A 69 385 69 HOH HOH . F 5 HOH A 70 386 70 HOH HOH . F 5 HOH A 71 387 71 HOH HOH . F 5 HOH A 72 388 72 HOH HOH . F 5 HOH A 73 389 73 HOH HOH . F 5 HOH A 74 390 74 HOH HOH . F 5 HOH A 75 391 75 HOH HOH . F 5 HOH A 76 392 76 HOH HOH . F 5 HOH A 77 393 77 HOH HOH . F 5 HOH A 78 394 78 HOH HOH . F 5 HOH A 79 395 79 HOH HOH . F 5 HOH A 80 396 80 HOH HOH . F 5 HOH A 81 397 81 HOH HOH . F 5 HOH A 82 398 82 HOH HOH . F 5 HOH A 83 399 83 HOH HOH . F 5 HOH A 84 400 84 HOH HOH . F 5 HOH A 85 401 85 HOH HOH . F 5 HOH A 86 402 86 HOH HOH . F 5 HOH A 87 403 87 HOH HOH . F 5 HOH A 88 404 88 HOH HOH . F 5 HOH A 89 405 89 HOH HOH . F 5 HOH A 90 406 90 HOH HOH . F 5 HOH A 91 407 91 HOH HOH . F 5 HOH A 92 408 92 HOH HOH . F 5 HOH A 93 409 93 HOH HOH . F 5 HOH A 94 410 94 HOH HOH . F 5 HOH A 95 411 95 HOH HOH . F 5 HOH A 96 412 96 HOH HOH . F 5 HOH A 97 413 97 HOH HOH . F 5 HOH A 98 414 98 HOH HOH . F 5 HOH A 99 415 99 HOH HOH . F 5 HOH A 100 416 100 HOH HOH . F 5 HOH A 101 417 101 HOH HOH . F 5 HOH A 102 418 102 HOH HOH . F 5 HOH A 103 419 103 HOH HOH . F 5 HOH A 104 420 104 HOH HOH . F 5 HOH A 105 421 105 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 3Q5 . . . B 2 -40.666 16.455 12.775 1 15.12 ? C1 3Q5 360 A 1 HETATM 2 C C2 3Q5 . . . B 2 -41.859 17.057 12.421 1 12.82 ? C2 3Q5 360 A 1 HETATM 3 C C3 3Q5 . . . B 2 -42.846 15.007 11.694 1 14.09 ? C3 3Q5 360 A 1 HETATM 4 C C4 3Q5 . . . B 2 -44.442 18.353 11.907 1 16.44 ? C4 3Q5 360 A 1 HETATM 5 C C5 3Q5 . . . B 2 -40.573 15.082 12.577 1 12.56 ? C5 3Q5 360 A 1 HETATM 6 C C6 3Q5 . . . B 2 -42.936 16.371 11.888 1 15.7 ? C6 3Q5 360 A 1 HETATM 7 C C7 3Q5 . . . B 2 -41.655 14.407 12.049 1 15.54 ? C7 3Q5 360 A 1 HETATM 8 C C8 3Q5 . . . B 2 -44.176 17.056 11.522 1 16.77 ? C8 3Q5 360 A 1 HETATM 9 C C9 3Q5 . . . B 2 -45.663 18.897 11.551 1 17.93 ? C9 3Q5 360 A 1 HETATM 10 C C10 3Q5 . . . B 2 -39.573 14.088 12.778 1 14.63 ? C10 3Q5 360 A 1 HETATM 11 C C11 3Q5 . . . B 2 -46.244 16.938 10.533 1 14.41 ? C11 3Q5 360 A 1 HETATM 12 C C12 3Q5 . . . B 2 -50.242 21.638 12.242 1 20.94 ? C12 3Q5 360 A 1 HETATM 13 C C13 3Q5 . . . B 2 -46.84 22.472 13.147 1 22.79 ? C13 3Q5 360 A 1 HETATM 14 C C14 3Q5 . . . B 2 -45.619 21.722 13.672 1 22.18 ? C14 3Q5 360 A 1 HETATM 15 C C15 3Q5 . . . B 2 -47.021 20.93 11.252 1 16.45 ? C15 3Q5 360 A 1 HETATM 16 C C16 3Q5 . . . B 2 -47.783 21.526 12.421 1 22.28 ? C16 3Q5 360 A 1 HETATM 17 C C17 3Q5 . . . B 2 -44.912 20.999 12.549 1 18.33 ? C17 3Q5 360 A 1 HETATM 18 C C18 3Q5 . . . B 2 -44.372 22 11.56 1 22.05 ? C18 3Q5 360 A 1 HETATM 19 C C19 3Q5 . . . B 2 -52.806 21.881 13.401 1 24.6 ? C19 3Q5 360 A 1 HETATM 20 C C20 3Q5 . . . B 2 -53.391 23.246 11.428 1 23.84 ? C20 3Q5 360 A 1 HETATM 21 C C21 3Q5 . . . B 2 -52.895 20.859 11.114 1 21.71 ? C21 3Q5 360 A 1 HETATM 22 C C22 3Q5 . . . B 2 -52.549 22.089 11.922 1 26.85 ? C22 3Q5 360 A 1 HETATM 23 N N23 3Q5 . . . B 2 -45.078 16.341 10.832 1 15.96 ? N23 3Q5 360 A 1 HETATM 24 N N24 3Q5 . . . B 2 -46.575 18.187 10.875 1 14.95 ? N24 3Q5 360 A 1 HETATM 25 N N25 3Q5 . . . B 2 -40.008 12.88 12.397 1 14.67 ? N25 3Q5 360 A 1 HETATM 26 N N26 3Q5 . . . B 2 -41.267 13.095 11.968 1 12.81 ? N26 3Q5 360 A 1 HETATM 27 N N27 3Q5 . . . B 2 -45.987 20.21 11.974 1 19.19 ? N27 3Q5 360 A 1 HETATM 28 N N28 3Q5 . . . B 2 -38.339 14.372 13.287 1 15.12 ? N28 3Q5 360 A 1 HETATM 29 N N29 3Q5 . . . B 2 -47.206 16.217 9.818 1 13.17 ? N29 3Q5 360 A 1 HETATM 30 N N30 3Q5 . . . B 2 -49.002 22.204 12.042 1 21.55 ? N30 3Q5 360 A 1 HETATM 31 O O31 3Q5 . . . B 2 -50.477 20.574 12.793 1 20.09 ? O31 3Q5 360 A 1 HETATM 32 O O32 3Q5 . . . B 2 -51.189 22.451 11.7 1 26.24 ? O32 3Q5 360 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 23 _model_server_stats.query_time_ms 257 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 32 #