data_3QD3
#
_model_server_result.job_id            wS8i6rIBd1fRXQ7BzGwU-w 
_model_server_result.datetime_utc      '2024-11-30 06:11:37' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3qd3 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":361}' 
#
_entry.id    3QD3 
#
_exptl.entry_id    3QD3 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            3QD3 
_cell.length_a            123.533 
_cell.length_b            123.533 
_cell.length_c            46.87 
_cell.Z_PDB               6 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3QD3 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        154 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 32 2 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 D N N 
? 4 E N N 
#
_struct_conn.conn_type_id                   covale 
_struct_conn.details                        ? 
_struct_conn.id                             covale1 
_struct_conn.ptnr1_label_asym_id            A 
_struct_conn.ptnr1_label_atom_id            C 
_struct_conn.ptnr1_label_comp_id            SEP 
_struct_conn.ptnr1_label_seq_id             194 
_struct_conn.ptnr1_auth_asym_id             A 
_struct_conn.ptnr1_auth_comp_id             SEP 
_struct_conn.ptnr1_auth_seq_id              241 
_struct_conn.ptnr1_symmetry                 1_555 
_struct_conn.ptnr2_label_asym_id            A 
_struct_conn.ptnr2_label_atom_id            N 
_struct_conn.ptnr2_label_comp_id            PHE 
_struct_conn.ptnr2_label_seq_id             195 
_struct_conn.ptnr2_auth_asym_id             A 
_struct_conn.ptnr2_auth_comp_id             PHE 
_struct_conn.ptnr2_auth_seq_id              242 
_struct_conn.ptnr2_symmetry                 1_555 
_struct_conn.pdbx_ptnr1_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr1_label_alt_id        ? 
_struct_conn.pdbx_ptnr1_standard_comp_id    ? 
_struct_conn.pdbx_ptnr2_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr2_label_alt_id        ? 
_struct_conn.pdbx_ptnr3_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr3_label_alt_id        ? 
_struct_conn.pdbx_ptnr3_label_asym_id       ? 
_struct_conn.pdbx_ptnr3_label_atom_id       ? 
_struct_conn.pdbx_ptnr3_label_comp_id       ? 
_struct_conn.pdbx_ptnr3_label_seq_id        ? 
_struct_conn.pdbx_PDB_id                    ? 
_struct_conn.pdbx_dist_value                1.331 
_struct_conn.pdbx_value_order               ? 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 194 n n 
C1 C2 GOL sing 195 n n 
C1 H11 GOL sing 196 n n 
C1 H12 GOL sing 197 n n 
O1 HO1 GOL sing 198 n n 
C2 O2 GOL sing 199 n n 
C2 C3 GOL sing 200 n n 
C2 H2 GOL sing 201 n n 
O2 HO2 GOL sing 202 n n 
C3 O3 GOL sing 203 n n 
C3 H31 GOL sing 204 n n 
C3 H32 GOL sing 205 n n 
O3 HO3 GOL sing 206 n n 
#
_atom_sites.entry_id                     3QD3 
_atom_sites.fract_transf_matrix[1][1]    0.008095 
_atom_sites.fract_transf_matrix[1][2]    0.004674 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009347 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.021336 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 3Q5 A 1 360 360 3Q5 3Q5 . 
C 3 SO4 A 1 1 1 SO4 SO4 . 
D 4 GOL A 1 361 1 GOL GOL . 
E 4 GOL A 1 362 1 GOL GOL . 
F 5 HOH A 1 2 2 HOH HOH . 
F 5 HOH A 2 3 3 HOH HOH . 
F 5 HOH A 3 4 4 HOH HOH . 
F 5 HOH A 4 5 5 HOH HOH . 
F 5 HOH A 5 6 6 HOH HOH . 
F 5 HOH A 6 7 7 HOH HOH . 
F 5 HOH A 7 8 8 HOH HOH . 
F 5 HOH A 8 9 9 HOH HOH . 
F 5 HOH A 9 10 10 HOH HOH . 
F 5 HOH A 10 11 11 HOH HOH . 
F 5 HOH A 11 12 12 HOH HOH . 
F 5 HOH A 12 13 13 HOH HOH . 
F 5 HOH A 13 14 14 HOH HOH . 
F 5 HOH A 14 15 15 HOH HOH . 
F 5 HOH A 15 16 16 HOH HOH . 
F 5 HOH A 16 17 17 HOH HOH . 
F 5 HOH A 17 18 18 HOH HOH . 
F 5 HOH A 18 19 19 HOH HOH . 
F 5 HOH A 19 20 20 HOH HOH . 
F 5 HOH A 20 21 21 HOH HOH . 
F 5 HOH A 21 22 22 HOH HOH . 
F 5 HOH A 22 23 23 HOH HOH . 
F 5 HOH A 23 24 24 HOH HOH . 
F 5 HOH A 24 25 25 HOH HOH . 
F 5 HOH A 25 26 26 HOH HOH . 
F 5 HOH A 26 27 27 HOH HOH . 
F 5 HOH A 27 28 28 HOH HOH . 
F 5 HOH A 28 29 29 HOH HOH . 
F 5 HOH A 29 30 30 HOH HOH . 
F 5 HOH A 30 31 31 HOH HOH . 
F 5 HOH A 31 32 32 HOH HOH . 
F 5 HOH A 32 33 33 HOH HOH . 
F 5 HOH A 33 34 34 HOH HOH . 
F 5 HOH A 34 35 35 HOH HOH . 
F 5 HOH A 35 36 36 HOH HOH . 
F 5 HOH A 36 37 37 HOH HOH . 
F 5 HOH A 37 38 38 HOH HOH . 
F 5 HOH A 38 39 39 HOH HOH . 
F 5 HOH A 39 40 40 HOH HOH . 
F 5 HOH A 40 41 41 HOH HOH . 
F 5 HOH A 41 42 42 HOH HOH . 
F 5 HOH A 42 43 43 HOH HOH . 
F 5 HOH A 43 44 44 HOH HOH . 
F 5 HOH A 44 45 45 HOH HOH . 
F 5 HOH A 45 46 46 HOH HOH . 
F 5 HOH A 46 47 47 HOH HOH . 
F 5 HOH A 47 363 1 HOH HOH . 
F 5 HOH A 48 364 48 HOH HOH . 
F 5 HOH A 49 365 49 HOH HOH . 
F 5 HOH A 50 366 50 HOH HOH . 
F 5 HOH A 51 367 51 HOH HOH . 
F 5 HOH A 52 368 52 HOH HOH . 
F 5 HOH A 53 369 53 HOH HOH . 
F 5 HOH A 54 370 54 HOH HOH . 
F 5 HOH A 55 371 55 HOH HOH . 
F 5 HOH A 56 372 56 HOH HOH . 
F 5 HOH A 57 373 57 HOH HOH . 
F 5 HOH A 58 374 58 HOH HOH . 
F 5 HOH A 59 375 59 HOH HOH . 
F 5 HOH A 60 376 60 HOH HOH . 
F 5 HOH A 61 377 61 HOH HOH . 
F 5 HOH A 62 378 62 HOH HOH . 
F 5 HOH A 63 379 63 HOH HOH . 
F 5 HOH A 64 380 64 HOH HOH . 
F 5 HOH A 65 381 65 HOH HOH . 
F 5 HOH A 66 382 66 HOH HOH . 
F 5 HOH A 67 383 67 HOH HOH . 
F 5 HOH A 68 384 68 HOH HOH . 
F 5 HOH A 69 385 69 HOH HOH . 
F 5 HOH A 70 386 70 HOH HOH . 
F 5 HOH A 71 387 71 HOH HOH . 
F 5 HOH A 72 388 72 HOH HOH . 
F 5 HOH A 73 389 73 HOH HOH . 
F 5 HOH A 74 390 74 HOH HOH . 
F 5 HOH A 75 391 75 HOH HOH . 
F 5 HOH A 76 392 76 HOH HOH . 
F 5 HOH A 77 393 77 HOH HOH . 
F 5 HOH A 78 394 78 HOH HOH . 
F 5 HOH A 79 395 79 HOH HOH . 
F 5 HOH A 80 396 80 HOH HOH . 
F 5 HOH A 81 397 81 HOH HOH . 
F 5 HOH A 82 398 82 HOH HOH . 
F 5 HOH A 83 399 83 HOH HOH . 
F 5 HOH A 84 400 84 HOH HOH . 
F 5 HOH A 85 401 85 HOH HOH . 
F 5 HOH A 86 402 86 HOH HOH . 
F 5 HOH A 87 403 87 HOH HOH . 
F 5 HOH A 88 404 88 HOH HOH . 
F 5 HOH A 89 405 89 HOH HOH . 
F 5 HOH A 90 406 90 HOH HOH . 
F 5 HOH A 91 407 91 HOH HOH . 
F 5 HOH A 92 408 92 HOH HOH . 
F 5 HOH A 93 409 93 HOH HOH . 
F 5 HOH A 94 410 94 HOH HOH . 
F 5 HOH A 95 411 95 HOH HOH . 
F 5 HOH A 96 412 96 HOH HOH . 
F 5 HOH A 97 413 97 HOH HOH . 
F 5 HOH A 98 414 98 HOH HOH . 
F 5 HOH A 99 415 99 HOH HOH . 
F 5 HOH A 100 416 100 HOH HOH . 
F 5 HOH A 101 417 101 HOH HOH . 
F 5 HOH A 102 418 102 HOH HOH . 
F 5 HOH A 103 419 103 HOH HOH . 
F 5 HOH A 104 420 104 HOH HOH . 
F 5 HOH A 105 421 105 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . D 4 -39.627 6.988 -6.415 1 28.26 ? C1 GOL 361 A 1 
HETATM 2 O O1 GOL . . . D 4 -40.799 6.664 -7.097 1 36.15 ? O1 GOL 361 A 1 
HETATM 3 C C2 GOL . . . D 4 -38.631 5.851 -6.605 1 29.94 ? C2 GOL 361 A 1 
HETATM 4 O O2 GOL . . . D 4 -37.436 6.36 -7.182 1 32.09 ? O2 GOL 361 A 1 
HETATM 5 C C3 GOL . . . D 4 -38.336 5.3 -5.22 1 22.5 ? C3 GOL 361 A 1 
HETATM 6 O O3 GOL . . . D 4 -37.092 4.645 -5.254 1 29.51 ? O3 GOL 361 A 1 
#
_model_server_stats.io_time_ms              21 
_model_server_stats.parse_time_ms           5 
_model_server_stats.create_model_time_ms    2 
_model_server_stats.query_time_ms           218 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           6 
#