data_3QD5
#
_model_server_result.job_id            rEgDI4RPhCPWS0qimGEIcw 
_model_server_result.datetime_utc      '2024-10-19 08:31:55' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3qd5 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"T","auth_seq_id":167}' 
#
_entry.id    3QD5 
#
_exptl.entry_id    3QD5 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              126.904 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'IODIDE ION' 
_entity.pdbx_number_of_molecules    29 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          108.62 
_cell.angle_gamma         90 
_cell.entry_id            3QD5 
_cell.length_a            103.15 
_cell.length_b            49.89 
_cell.length_c            61.97 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3QD5 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA tetrameric 4 software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA 1 1 
A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA 2 1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 2_656 -x+1,y,-z+1 -1 0 0 0 1 0 0 0 -1 83.363591 0 58.726305 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 D N N 
? 3 E N N 
? 3 F N N 
? 3 G N N 
? 3 H N N 
? 3 I N N 
? 3 J N N 
? 3 K N N 
? 3 L N N 
? 3 M N N 
? 3 N N N 
? 3 O N N 
? 3 P N N 
? 3 R N N 
? 3 S N N 
? 3 T N N 
? 3 U N N 
? 3 V N N 
? 3 W N N 
? 3 X N N 
? 3 Y N N 
? 3 Z N N 
? 3 AA N N 
? 3 BA N N 
? 3 CA N N 
? 3 DA N N 
? 3 EA N N 
? 3 FA N N 
? 3 GA N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A C ILE 79 A ILE 75 1_555 A N CSO 80 A CSO 76 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? 
covale ? covale2 A C CSO 80 A CSO 76 1_555 A N GLY 81 A GLY 77 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.321 ? 
covale ? covale3 B C ILE 79 B ILE 75 1_555 B N CSO 80 B CSO 76 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? 
covale ? covale4 B C CSO 80 B CSO 76 1_555 B N GLY 81 B GLY 77 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? 
#
_chem_comp.formula           'I -1' 
_chem_comp.formula_weight    126.904 
_chem_comp.id                IOD 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'IODIDE ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     3QD5 
_atom_sites.fract_transf_matrix[1][1]    0.009695 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.003266 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.020044 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.017028 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 EDO A 1 164 164 EDO EDO . 
D 3 IOD A 1 165 1 IOD IOD . 
E 3 IOD A 1 166 2 IOD IOD . 
F 3 IOD A 1 167 3 IOD IOD . 
G 3 IOD A 1 168 4 IOD IOD . 
H 3 IOD A 1 169 5 IOD IOD . 
I 3 IOD A 1 170 6 IOD IOD . 
J 3 IOD A 1 171 7 IOD IOD . 
K 3 IOD A 1 172 8 IOD IOD . 
L 3 IOD A 1 173 9 IOD IOD . 
M 3 IOD A 1 174 10 IOD IOD . 
N 3 IOD A 1 175 11 IOD IOD . 
O 3 IOD A 1 176 12 IOD IOD . 
P 3 IOD A 1 177 27 IOD IOD . 
Q 2 EDO B 1 164 164 EDO EDO . 
R 3 IOD B 1 165 13 IOD IOD . 
S 3 IOD B 1 166 14 IOD IOD . 
T 3 IOD B 1 167 15 IOD IOD . 
U 3 IOD B 1 168 16 IOD IOD . 
V 3 IOD B 1 169 17 IOD IOD . 
W 3 IOD B 1 170 18 IOD IOD . 
X 3 IOD B 1 171 19 IOD IOD . 
Y 3 IOD B 1 172 20 IOD IOD . 
Z 3 IOD B 1 173 21 IOD IOD . 
AA 3 IOD B 1 174 22 IOD IOD . 
BA 3 IOD B 1 175 23 IOD IOD . 
CA 3 IOD B 1 176 24 IOD IOD . 
DA 3 IOD B 1 177 25 IOD IOD . 
EA 3 IOD B 1 178 26 IOD IOD . 
FA 3 IOD B 1 179 28 IOD IOD . 
GA 3 IOD B 1 180 29 IOD IOD . 
HA 4 HOH A 1 178 2 HOH HOH . 
HA 4 HOH A 2 179 5 HOH HOH . 
HA 4 HOH A 3 180 180 HOH HOH . 
HA 4 HOH A 4 181 181 HOH HOH . 
HA 4 HOH A 5 182 182 HOH HOH . 
HA 4 HOH A 6 183 183 HOH HOH . 
HA 4 HOH A 7 184 184 HOH HOH . 
HA 4 HOH A 8 185 185 HOH HOH . 
HA 4 HOH A 9 186 6 HOH HOH . 
HA 4 HOH A 10 187 187 HOH HOH . 
HA 4 HOH A 11 188 188 HOH HOH . 
HA 4 HOH A 12 189 189 HOH HOH . 
HA 4 HOH A 13 190 190 HOH HOH . 
HA 4 HOH A 14 191 191 HOH HOH . 
HA 4 HOH A 15 192 192 HOH HOH . 
HA 4 HOH A 16 193 193 HOH HOH . 
HA 4 HOH A 17 194 8 HOH HOH . 
HA 4 HOH A 18 195 195 HOH HOH . 
HA 4 HOH A 19 196 14 HOH HOH . 
HA 4 HOH A 20 197 15 HOH HOH . 
HA 4 HOH A 21 198 16 HOH HOH . 
HA 4 HOH A 22 199 17 HOH HOH . 
HA 4 HOH A 23 200 19 HOH HOH . 
HA 4 HOH A 24 201 20 HOH HOH . 
HA 4 HOH A 25 202 25 HOH HOH . 
HA 4 HOH A 26 203 28 HOH HOH . 
HA 4 HOH A 27 204 204 HOH HOH . 
HA 4 HOH A 28 205 32 HOH HOH . 
HA 4 HOH A 29 206 34 HOH HOH . 
HA 4 HOH A 30 207 35 HOH HOH . 
HA 4 HOH A 31 208 36 HOH HOH . 
HA 4 HOH A 32 209 39 HOH HOH . 
HA 4 HOH A 33 210 210 HOH HOH . 
HA 4 HOH A 34 211 211 HOH HOH . 
HA 4 HOH A 35 212 212 HOH HOH . 
HA 4 HOH A 36 213 40 HOH HOH . 
HA 4 HOH A 37 214 41 HOH HOH . 
HA 4 HOH A 38 215 43 HOH HOH . 
HA 4 HOH A 39 216 45 HOH HOH . 
HA 4 HOH A 40 217 47 HOH HOH . 
HA 4 HOH A 41 218 49 HOH HOH . 
HA 4 HOH A 42 219 51 HOH HOH . 
HA 4 HOH A 43 220 58 HOH HOH . 
HA 4 HOH A 44 221 59 HOH HOH . 
HA 4 HOH A 45 222 61 HOH HOH . 
HA 4 HOH A 46 223 63 HOH HOH . 
HA 4 HOH A 47 224 65 HOH HOH . 
HA 4 HOH A 48 225 66 HOH HOH . 
HA 4 HOH A 49 226 67 HOH HOH . 
HA 4 HOH A 50 227 70 HOH HOH . 
HA 4 HOH A 51 228 75 HOH HOH . 
HA 4 HOH A 52 229 78 HOH HOH . 
HA 4 HOH A 53 230 80 HOH HOH . 
HA 4 HOH A 54 231 83 HOH HOH . 
HA 4 HOH A 55 232 84 HOH HOH . 
HA 4 HOH A 56 233 85 HOH HOH . 
HA 4 HOH A 57 234 88 HOH HOH . 
HA 4 HOH A 58 235 90 HOH HOH . 
HA 4 HOH A 59 236 91 HOH HOH . 
HA 4 HOH A 60 237 92 HOH HOH . 
HA 4 HOH A 61 238 93 HOH HOH . 
HA 4 HOH A 62 239 95 HOH HOH . 
HA 4 HOH A 63 240 97 HOH HOH . 
HA 4 HOH A 64 241 98 HOH HOH . 
HA 4 HOH A 65 242 100 HOH HOH . 
HA 4 HOH A 66 243 101 HOH HOH . 
HA 4 HOH A 67 244 103 HOH HOH . 
HA 4 HOH A 68 245 106 HOH HOH . 
HA 4 HOH A 69 246 108 HOH HOH . 
HA 4 HOH A 70 247 111 HOH HOH . 
HA 4 HOH A 71 248 112 HOH HOH . 
HA 4 HOH A 72 249 114 HOH HOH . 
HA 4 HOH A 73 250 115 HOH HOH . 
HA 4 HOH A 74 251 117 HOH HOH . 
HA 4 HOH A 75 252 120 HOH HOH . 
HA 4 HOH A 76 253 121 HOH HOH . 
HA 4 HOH A 77 254 123 HOH HOH . 
HA 4 HOH A 78 255 126 HOH HOH . 
HA 4 HOH A 79 256 128 HOH HOH . 
HA 4 HOH A 80 257 140 HOH HOH . 
HA 4 HOH A 81 258 142 HOH HOH . 
HA 4 HOH A 82 259 146 HOH HOH . 
HA 4 HOH A 83 260 147 HOH HOH . 
HA 4 HOH A 84 261 148 HOH HOH . 
HA 4 HOH A 85 262 149 HOH HOH . 
HA 4 HOH A 86 263 150 HOH HOH . 
HA 4 HOH A 87 264 151 HOH HOH . 
HA 4 HOH A 88 265 152 HOH HOH . 
HA 4 HOH A 89 266 153 HOH HOH . 
HA 4 HOH A 90 267 154 HOH HOH . 
HA 4 HOH A 91 268 155 HOH HOH . 
HA 4 HOH A 92 269 156 HOH HOH . 
HA 4 HOH A 93 270 157 HOH HOH . 
HA 4 HOH A 94 271 158 HOH HOH . 
HA 4 HOH A 95 272 159 HOH HOH . 
HA 4 HOH A 96 273 160 HOH HOH . 
HA 4 HOH A 97 274 161 HOH HOH . 
HA 4 HOH A 98 275 162 HOH HOH . 
HA 4 HOH A 99 276 170 HOH HOH . 
HA 4 HOH A 100 277 171 HOH HOH . 
HA 4 HOH A 101 278 172 HOH HOH . 
HA 4 HOH A 102 279 173 HOH HOH . 
HA 4 HOH A 103 280 174 HOH HOH . 
HA 4 HOH A 104 281 175 HOH HOH . 
IA 4 HOH B 1 181 1 HOH HOH . 
IA 4 HOH B 2 182 3 HOH HOH . 
IA 4 HOH B 3 183 4 HOH HOH . 
IA 4 HOH B 4 184 7 HOH HOH . 
IA 4 HOH B 5 185 9 HOH HOH . 
IA 4 HOH B 6 186 186 HOH HOH . 
IA 4 HOH B 7 187 10 HOH HOH . 
IA 4 HOH B 8 188 11 HOH HOH . 
IA 4 HOH B 9 189 12 HOH HOH . 
IA 4 HOH B 10 190 13 HOH HOH . 
IA 4 HOH B 11 191 18 HOH HOH . 
IA 4 HOH B 12 192 21 HOH HOH . 
IA 4 HOH B 13 193 22 HOH HOH . 
IA 4 HOH B 14 194 194 HOH HOH . 
IA 4 HOH B 15 195 23 HOH HOH . 
IA 4 HOH B 16 196 196 HOH HOH . 
IA 4 HOH B 17 197 197 HOH HOH . 
IA 4 HOH B 18 198 198 HOH HOH . 
IA 4 HOH B 19 199 199 HOH HOH . 
IA 4 HOH B 20 200 200 HOH HOH . 
IA 4 HOH B 21 201 201 HOH HOH . 
IA 4 HOH B 22 202 202 HOH HOH . 
IA 4 HOH B 23 203 203 HOH HOH . 
IA 4 HOH B 24 204 24 HOH HOH . 
IA 4 HOH B 25 205 205 HOH HOH . 
IA 4 HOH B 26 206 206 HOH HOH . 
IA 4 HOH B 27 207 207 HOH HOH . 
IA 4 HOH B 28 208 208 HOH HOH . 
IA 4 HOH B 29 209 209 HOH HOH . 
IA 4 HOH B 30 210 26 HOH HOH . 
IA 4 HOH B 31 211 27 HOH HOH . 
IA 4 HOH B 32 212 29 HOH HOH . 
IA 4 HOH B 33 213 213 HOH HOH . 
IA 4 HOH B 34 214 30 HOH HOH . 
IA 4 HOH B 35 215 31 HOH HOH . 
IA 4 HOH B 36 216 33 HOH HOH . 
IA 4 HOH B 37 217 37 HOH HOH . 
IA 4 HOH B 38 218 38 HOH HOH . 
IA 4 HOH B 39 219 42 HOH HOH . 
IA 4 HOH B 40 220 44 HOH HOH . 
IA 4 HOH B 41 221 46 HOH HOH . 
IA 4 HOH B 42 222 48 HOH HOH . 
IA 4 HOH B 43 223 50 HOH HOH . 
IA 4 HOH B 44 224 52 HOH HOH . 
IA 4 HOH B 45 225 53 HOH HOH . 
IA 4 HOH B 46 226 54 HOH HOH . 
IA 4 HOH B 47 227 55 HOH HOH . 
IA 4 HOH B 48 228 56 HOH HOH . 
IA 4 HOH B 49 229 57 HOH HOH . 
IA 4 HOH B 50 230 60 HOH HOH . 
IA 4 HOH B 51 231 62 HOH HOH . 
IA 4 HOH B 52 232 64 HOH HOH . 
IA 4 HOH B 53 233 68 HOH HOH . 
IA 4 HOH B 54 234 69 HOH HOH . 
IA 4 HOH B 55 235 71 HOH HOH . 
IA 4 HOH B 56 236 72 HOH HOH . 
IA 4 HOH B 57 237 73 HOH HOH . 
IA 4 HOH B 58 238 74 HOH HOH . 
IA 4 HOH B 59 239 76 HOH HOH . 
IA 4 HOH B 60 240 77 HOH HOH . 
IA 4 HOH B 61 241 79 HOH HOH . 
IA 4 HOH B 62 242 81 HOH HOH . 
IA 4 HOH B 63 243 82 HOH HOH . 
IA 4 HOH B 64 244 86 HOH HOH . 
IA 4 HOH B 65 245 87 HOH HOH . 
IA 4 HOH B 66 246 89 HOH HOH . 
IA 4 HOH B 67 247 94 HOH HOH . 
IA 4 HOH B 68 248 96 HOH HOH . 
IA 4 HOH B 69 249 99 HOH HOH . 
IA 4 HOH B 70 250 102 HOH HOH . 
IA 4 HOH B 71 251 104 HOH HOH . 
IA 4 HOH B 72 252 105 HOH HOH . 
IA 4 HOH B 73 253 107 HOH HOH . 
IA 4 HOH B 74 254 109 HOH HOH . 
IA 4 HOH B 75 255 110 HOH HOH . 
IA 4 HOH B 76 256 113 HOH HOH . 
IA 4 HOH B 77 257 116 HOH HOH . 
IA 4 HOH B 78 258 118 HOH HOH . 
IA 4 HOH B 79 259 119 HOH HOH . 
IA 4 HOH B 80 260 122 HOH HOH . 
IA 4 HOH B 81 261 124 HOH HOH . 
IA 4 HOH B 82 262 125 HOH HOH . 
IA 4 HOH B 83 263 127 HOH HOH . 
IA 4 HOH B 84 264 129 HOH HOH . 
IA 4 HOH B 85 265 130 HOH HOH . 
IA 4 HOH B 86 266 131 HOH HOH . 
IA 4 HOH B 87 267 132 HOH HOH . 
IA 4 HOH B 88 268 133 HOH HOH . 
IA 4 HOH B 89 269 134 HOH HOH . 
IA 4 HOH B 90 270 135 HOH HOH . 
IA 4 HOH B 91 271 136 HOH HOH . 
IA 4 HOH B 92 272 137 HOH HOH . 
IA 4 HOH B 93 273 138 HOH HOH . 
IA 4 HOH B 94 274 139 HOH HOH . 
IA 4 HOH B 95 275 141 HOH HOH . 
IA 4 HOH B 96 276 143 HOH HOH . 
IA 4 HOH B 97 277 144 HOH HOH . 
IA 4 HOH B 98 278 145 HOH HOH . 
IA 4 HOH B 99 279 163 HOH HOH . 
IA 4 HOH B 100 280 164 HOH HOH . 
IA 4 HOH B 101 281 165 HOH HOH . 
IA 4 HOH B 102 282 166 HOH HOH . 
IA 4 HOH B 103 283 167 HOH HOH . 
IA 4 HOH B 104 284 168 HOH HOH . 
IA 4 HOH B 105 285 169 HOH HOH . 
IA 4 HOH B 106 286 176 HOH HOH . 
IA 4 HOH B 107 287 177 HOH HOH . 
IA 4 HOH B 108 288 178 HOH HOH . 
IA 4 HOH B 109 289 179 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           I 
_atom_site.label_atom_id         I 
_atom_site.label_comp_id         IOD 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         T 
_atom_site.label_entity_id       3 
_atom_site.Cartn_x               57.99 
_atom_site.Cartn_y               -2.629 
_atom_site.Cartn_z               21.574 
_atom_site.occupancy             0.49 
_atom_site.B_iso_or_equiv        35.61 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          I 
_atom_site.auth_comp_id          IOD 
_atom_site.auth_seq_id           167 
_atom_site.auth_asym_id          B 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              11 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    23 
_model_server_stats.query_time_ms           336 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           1 
#