data_3QDC # _model_server_result.job_id oXuPdP7d4KUiLHVn8GnxZQ _model_server_result.datetime_utc '2024-11-15 02:58:31' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3qdc # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":240}' # _entry.id 3QDC # _exptl.entry_id 3QDC _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 284.436 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description RETINAL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3QDC _cell.length_a 86.44 _cell.length_b 131.09 _cell.length_c 51.23 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3QDC _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C20 H28 O' _chem_comp.formula_weight 284.436 _chem_comp.id RET _chem_comp.mon_nstd_flag . _chem_comp.name RETINAL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 RET sing 506 n n C1 C6 RET sing 507 n n C1 C16 RET sing 508 n n C1 C17 RET sing 509 n n C2 C3 RET sing 510 n n C2 H21 RET sing 511 n n C2 H22 RET sing 512 n n C3 C4 RET sing 513 n n C3 H31 RET sing 514 n n C3 H32 RET sing 515 n n C4 C5 RET sing 516 n n C4 H41 RET sing 517 n n C4 H42 RET sing 518 n n C5 C6 RET doub 519 n n C5 C18 RET sing 520 n n C6 C7 RET sing 521 n n C7 C8 RET doub 522 e n C7 H7 RET sing 523 n n C8 C9 RET sing 524 n n C8 H8 RET sing 525 n n C9 C10 RET doub 526 e n C9 C19 RET sing 527 n n C10 C11 RET sing 528 n n C10 H10 RET sing 529 n n C11 C12 RET doub 530 e n C11 H11 RET sing 531 n n C12 C13 RET sing 532 n n C12 H12 RET sing 533 n n C13 C14 RET doub 534 e n C13 C20 RET sing 535 n n C14 C15 RET sing 536 n n C14 H14 RET sing 537 n n C15 O1 RET doub 538 n n C15 H15 RET sing 539 n n C16 H161 RET sing 540 n n C16 H162 RET sing 541 n n C16 H163 RET sing 542 n n C17 H171 RET sing 543 n n C17 H172 RET sing 544 n n C17 H173 RET sing 545 n n C18 H181 RET sing 546 n n C18 H182 RET sing 547 n n C18 H183 RET sing 548 n n C19 H191 RET sing 549 n n C19 H192 RET sing 550 n n C19 H193 RET sing 551 n n C20 H201 RET sing 552 n n C20 H202 RET sing 553 n n C20 H203 RET sing 554 n n # _atom_sites.entry_id 3QDC _atom_sites.fract_transf_matrix[1][1] 0.011569 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007628 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01952 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 RET A 1 240 205 RET RET . C 3 BOG A 1 241 1 BOG BOG . D 4 LFA A 1 242 2 LFA LFA . E 4 LFA A 1 243 3 LFA LFA . F 4 LFA A 1 244 4 LFA LFA . G 4 LFA A 1 245 5 LFA LFA . H 4 LFA A 1 246 6 LFA LFA . I 4 LFA A 1 247 7 LFA LFA . J 4 LFA A 1 248 8 LFA LFA . K 4 LFA A 1 249 9 LFA LFA . L 4 LFA A 1 250 10 LFA LFA . M 4 LFA A 1 251 11 LFA LFA . N 4 LFA A 1 252 12 LFA LFA . O 4 LFA A 1 253 13 LFA LFA . P 4 LFA A 1 254 14 LFA LFA . Q 4 LFA A 1 255 15 LFA LFA . R 4 LFA A 1 256 16 LFA LFA . S 5 L2P A 1 257 17 L2P L2P . T 4 LFA A 1 258 18 LFA LFA . U 4 LFA A 1 259 19 LFA LFA . V 5 L2P A 1 260 20 L2P L2P . W 4 LFA A 1 261 21 LFA LFA . X 4 LFA A 1 262 22 LFA LFA . Y 4 LFA A 1 263 23 LFA LFA . Z 4 LFA A 1 264 24 LFA LFA . AA 4 LFA A 1 265 25 LFA LFA . BA 4 LFA A 1 266 26 LFA LFA . CA 4 LFA A 1 267 27 LFA LFA . DA 4 LFA A 1 268 28 LFA LFA . EA 4 LFA A 1 269 29 LFA LFA . FA 4 LFA A 1 270 30 LFA LFA . GA 4 LFA A 1 271 31 LFA LFA . HA 4 LFA A 1 272 32 LFA LFA . IA 6 HOH A 1 273 1 HOH HOH . IA 6 HOH A 2 274 2 HOH HOH . IA 6 HOH A 3 275 3 HOH HOH . IA 6 HOH A 4 276 4 HOH HOH . IA 6 HOH A 5 277 5 HOH HOH . IA 6 HOH A 6 278 6 HOH HOH . IA 6 HOH A 7 279 7 HOH HOH . IA 6 HOH A 8 280 8 HOH HOH . IA 6 HOH A 9 281 9 HOH HOH . IA 6 HOH A 10 282 10 HOH HOH . IA 6 HOH A 11 283 11 HOH HOH . IA 6 HOH A 12 284 12 HOH HOH . IA 6 HOH A 13 285 13 HOH HOH . IA 6 HOH A 14 286 14 HOH HOH . IA 6 HOH A 15 287 15 HOH HOH . IA 6 HOH A 16 288 16 HOH HOH . IA 6 HOH A 17 289 17 HOH HOH . IA 6 HOH A 18 290 18 HOH HOH . IA 6 HOH A 19 291 19 HOH HOH . IA 6 HOH A 20 292 20 HOH HOH . IA 6 HOH A 21 293 21 HOH HOH . IA 6 HOH A 22 294 22 HOH HOH . IA 6 HOH A 23 295 23 HOH HOH . IA 6 HOH A 24 296 24 HOH HOH . IA 6 HOH A 25 297 25 HOH HOH . IA 6 HOH A 26 298 26 HOH HOH . IA 6 HOH A 27 299 27 HOH HOH . IA 6 HOH A 28 300 28 HOH HOH . IA 6 HOH A 29 301 29 HOH HOH . IA 6 HOH A 30 302 30 HOH HOH . IA 6 HOH A 31 303 31 HOH HOH . IA 6 HOH A 32 304 32 HOH HOH . IA 6 HOH A 33 305 33 HOH HOH . IA 6 HOH A 34 306 34 HOH HOH . IA 6 HOH A 35 307 35 HOH HOH . IA 6 HOH A 36 308 36 HOH HOH . IA 6 HOH A 37 309 37 HOH HOH . IA 6 HOH A 38 310 38 HOH HOH . IA 6 HOH A 39 311 39 HOH HOH . IA 6 HOH A 40 312 40 HOH HOH . IA 6 HOH A 41 313 41 HOH HOH . IA 6 HOH A 42 314 42 HOH HOH . IA 6 HOH A 43 315 43 HOH HOH . IA 6 HOH A 44 316 44 HOH HOH . IA 6 HOH A 45 317 45 HOH HOH . IA 6 HOH A 46 318 46 HOH HOH . IA 6 HOH A 47 319 47 HOH HOH . IA 6 HOH A 48 320 48 HOH HOH . IA 6 HOH A 49 321 49 HOH HOH . IA 6 HOH A 50 322 50 HOH HOH . IA 6 HOH A 51 323 51 HOH HOH . IA 6 HOH A 52 324 52 HOH HOH . IA 6 HOH A 53 325 53 HOH HOH . IA 6 HOH A 54 326 54 HOH HOH . IA 6 HOH A 55 327 55 HOH HOH . IA 6 HOH A 56 328 56 HOH HOH . IA 6 HOH A 57 329 57 HOH HOH . IA 6 HOH A 58 330 58 HOH HOH . IA 6 HOH A 59 331 59 HOH HOH . IA 6 HOH A 60 332 60 HOH HOH . IA 6 HOH A 61 333 61 HOH HOH . IA 6 HOH A 62 334 62 HOH HOH . IA 6 HOH A 63 335 63 HOH HOH . IA 6 HOH A 64 336 64 HOH HOH . IA 6 HOH A 65 337 65 HOH HOH . IA 6 HOH A 66 338 66 HOH HOH . IA 6 HOH A 67 339 67 HOH HOH . IA 6 HOH A 68 340 68 HOH HOH . IA 6 HOH A 69 341 69 HOH HOH . IA 6 HOH A 70 342 70 HOH HOH . IA 6 HOH A 71 343 71 HOH HOH . IA 6 HOH A 72 344 72 HOH HOH . IA 6 HOH A 73 345 73 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 RET . A . B 2 19.252 34.152 5.888 0.7 1 ? C1 RET 240 A 1 HETATM 2 C C1 RET . B . B 2 19.183 34.002 5.784 0.3 1 ? C1 RET 240 A 1 HETATM 3 C C2 RET . A . B 2 20.22 35.148 6.559 0.7 2.6 ? C2 RET 240 A 1 HETATM 4 C C2 RET . B . B 2 20.175 35.073 6.247 0.3 1.33 ? C2 RET 240 A 1 HETATM 5 C C3 RET . A . B 2 21.001 34.43 7.7 0.7 1 ? C3 RET 240 A 1 HETATM 6 C C3 RET . B . B 2 20.994 34.584 7.442 0.3 1 ? C3 RET 240 A 1 HETATM 7 C C4 RET . A . B 2 22.011 33.486 7.012 0.7 3.59 ? C4 RET 240 A 1 HETATM 8 C C4 RET . B . B 2 21.934 33.474 6.97 0.3 2.37 ? C4 RET 240 A 1 HETATM 9 C C5 RET . A . B 2 21.245 32.494 6.15 0.7 3.03 ? C5 RET 240 A 1 HETATM 10 C C5 RET . B . B 2 21.156 32.442 6.151 0.3 1.06 ? C5 RET 240 A 1 HETATM 11 C C6 RET . A . B 2 19.949 32.739 5.647 0.7 2.15 ? C6 RET 240 A 1 HETATM 12 C C6 RET . B . B 2 19.884 32.648 5.623 0.3 1.58 ? C6 RET 240 A 1 HETATM 13 C C7 RET . A . B 2 19.321 31.693 4.935 0.7 1 ? C7 RET 240 A 1 HETATM 14 C C7 RET . B . B 2 19.235 31.57 5.03 0.3 1 ? C7 RET 240 A 1 HETATM 15 C C8 RET . A . B 2 18.025 31.764 4.39 0.7 1 ? C8 RET 240 A 1 HETATM 16 C C8 RET . B . B 2 17.926 31.626 4.56 0.3 1.96 ? C8 RET 240 A 1 HETATM 17 C C9 RET . A . B 2 17.447 30.707 3.664 0.7 1.56 ? C9 RET 240 A 1 HETATM 18 C C9 RET . B . B 2 17.372 30.487 3.986 0.3 1.99 ? C9 RET 240 A 1 HETATM 19 C C10 RET . A . B 2 16.133 30.84 3.185 0.7 3.26 ? C10 RET 240 A 1 HETATM 20 C C10 RET . B . B 2 16.067 30.459 3.506 0.3 1.16 ? C10 RET 240 A 1 HETATM 21 C C11 RET . A . B 2 15.488 29.833 2.435 0.7 1 ? C11 RET 240 A 1 HETATM 22 C C11 RET . B . B 2 15.526 29.311 2.938 0.3 1 ? C11 RET 240 A 1 HETATM 23 C C12 RET . A . B 2 14.147 30.135 2.201 0.7 1 ? C12 RET 240 A 1 HETATM 24 C C12 RET . B . B 2 14.209 29.404 2.5 0.3 1 ? C12 RET 240 A 1 HETATM 25 C C13 RET . A . B 2 13.248 29.204 1.667 0.7 1.2 ? C13 RET 240 A 1 HETATM 26 C C13 RET . B . B 2 13.621 28.283 1.925 0.3 1 ? C13 RET 240 A 1 HETATM 27 C C14 RET . A . B 2 11.942 29.595 1.522 0.7 3.75 ? C14 RET 240 A 1 HETATM 28 C C14 RET . B . B 2 12.326 28.171 1.432 0.3 1 ? C14 RET 240 A 1 HETATM 29 C C15 RET . A . B 2 11.025 28.678 1.054 0.7 3.46 ? C15 RET 240 A 1 HETATM 30 C C15 RET . B . B 2 11.323 29.131 1.388 0.3 2.44 ? C15 RET 240 A 1 HETATM 31 C C16 RET . A . B 2 18.028 33.97 6.788 0.7 3.8 ? C16 RET 240 A 1 HETATM 32 C C16 RET . B . B 2 18.085 33.842 6.838 0.3 2.19 ? C16 RET 240 A 1 HETATM 33 C C17 RET . A . B 2 18.856 34.847 4.533 0.7 1 ? C17 RET 240 A 1 HETATM 34 C C17 RET . B . B 2 18.582 34.427 4.443 0.3 1 ? C17 RET 240 A 1 HETATM 35 C C18 RET . A . B 2 21.978 31.152 5.9 0.7 1 ? C18 RET 240 A 1 HETATM 36 C C18 RET . B . B 2 21.833 31.092 5.907 0.3 1 ? C18 RET 240 A 1 HETATM 37 C C19 RET . A . B 2 18.215 29.372 3.444 0.7 1 ? C19 RET 240 A 1 HETATM 38 C C19 RET . B . B 2 18.234 29.229 3.856 0.3 1 ? C19 RET 240 A 1 HETATM 39 C C20 RET . A . B 2 13.693 27.793 1.196 0.7 1 ? C20 RET 240 A 1 HETATM 40 C C20 RET . B . B 2 14.495 27.038 1.782 0.3 1 ? C20 RET 240 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 254 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 40 #