data_3QDC # _model_server_result.job_id JTBnKZyhdfa8d0QVnk39dA _model_server_result.datetime_utc '2024-11-15 03:05:49' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3qdc # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":241}' # _entry.id 3QDC # _exptl.entry_id 3QDC _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 292.369 _entity.id 3 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 'octyl beta-D-glucopyranoside' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3QDC _cell.length_a 86.44 _cell.length_b 131.09 _cell.length_c 51.23 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3QDC _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C14 H28 O6' _chem_comp.formula_weight 292.369 _chem_comp.id BOG _chem_comp.mon_nstd_flag n _chem_comp.name 'octyl beta-D-glucopyranoside' _chem_comp.type d-saccharide _chem_comp.pdbx_synonyms 'Beta-Octylglucoside;octyl beta-D-glucoside;octyl D-glucoside;octyl glucoside' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 BOG sing 70 n n C1 C2 BOG sing 71 n n C1 O5 BOG sing 72 n n C1 H1 BOG sing 73 n n O1 C1' BOG sing 74 n n C2 O2 BOG sing 75 n n C2 C3 BOG sing 76 n n C2 H2 BOG sing 77 n n O2 HO2 BOG sing 78 n n C3 O3 BOG sing 79 n n C3 C4 BOG sing 80 n n C3 H3 BOG sing 81 n n O3 HO3 BOG sing 82 n n C4 O4 BOG sing 83 n n C4 C5 BOG sing 84 n n C4 H4 BOG sing 85 n n O4 HO4 BOG sing 86 n n C5 O5 BOG sing 87 n n C5 C6 BOG sing 88 n n C5 H5 BOG sing 89 n n C6 O6 BOG sing 90 n n C6 H61 BOG sing 91 n n C6 H62 BOG sing 92 n n O6 HO6 BOG sing 93 n n C1' C2' BOG sing 94 n n C1' "H1'1" BOG sing 95 n n C1' "H1'2" BOG sing 96 n n C2' C3' BOG sing 97 n n C2' "H2'1" BOG sing 98 n n C2' "H2'2" BOG sing 99 n n C3' C4' BOG sing 100 n n C3' "H3'1" BOG sing 101 n n C3' "H3'2" BOG sing 102 n n C4' C5' BOG sing 103 n n C4' "H4'1" BOG sing 104 n n C4' "H4'2" BOG sing 105 n n C5' C6' BOG sing 106 n n C5' "H5'1" BOG sing 107 n n C5' "H5'2" BOG sing 108 n n C6' C7' BOG sing 109 n n C6' "H6'1" BOG sing 110 n n C6' "H6'2" BOG sing 111 n n C7' C8' BOG sing 112 n n C7' "H7'1" BOG sing 113 n n C7' "H7'2" BOG sing 114 n n C8' "H8'1" BOG sing 115 n n C8' "H8'2" BOG sing 116 n n C8' "H8'3" BOG sing 117 n n # _pdbx_chem_comp_identifier.comp_id BOG _pdbx_chem_comp_identifier.identifier b-octylglucoside _pdbx_chem_comp_identifier.type 'IUPAC CARBOHYDRATE SYMBOL' _pdbx_chem_comp_identifier.program PDB-CARE _pdbx_chem_comp_identifier.program_version 1 # _atom_sites.entry_id 3QDC _atom_sites.fract_transf_matrix[1][1] 0.011569 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007628 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01952 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 RET A 1 240 205 RET RET . C 3 BOG A 1 241 1 BOG BOG . D 4 LFA A 1 242 2 LFA LFA . E 4 LFA A 1 243 3 LFA LFA . F 4 LFA A 1 244 4 LFA LFA . G 4 LFA A 1 245 5 LFA LFA . H 4 LFA A 1 246 6 LFA LFA . I 4 LFA A 1 247 7 LFA LFA . J 4 LFA A 1 248 8 LFA LFA . K 4 LFA A 1 249 9 LFA LFA . L 4 LFA A 1 250 10 LFA LFA . M 4 LFA A 1 251 11 LFA LFA . N 4 LFA A 1 252 12 LFA LFA . O 4 LFA A 1 253 13 LFA LFA . P 4 LFA A 1 254 14 LFA LFA . Q 4 LFA A 1 255 15 LFA LFA . R 4 LFA A 1 256 16 LFA LFA . S 5 L2P A 1 257 17 L2P L2P . T 4 LFA A 1 258 18 LFA LFA . U 4 LFA A 1 259 19 LFA LFA . V 5 L2P A 1 260 20 L2P L2P . W 4 LFA A 1 261 21 LFA LFA . X 4 LFA A 1 262 22 LFA LFA . Y 4 LFA A 1 263 23 LFA LFA . Z 4 LFA A 1 264 24 LFA LFA . AA 4 LFA A 1 265 25 LFA LFA . BA 4 LFA A 1 266 26 LFA LFA . CA 4 LFA A 1 267 27 LFA LFA . DA 4 LFA A 1 268 28 LFA LFA . EA 4 LFA A 1 269 29 LFA LFA . FA 4 LFA A 1 270 30 LFA LFA . GA 4 LFA A 1 271 31 LFA LFA . HA 4 LFA A 1 272 32 LFA LFA . IA 6 HOH A 1 273 1 HOH HOH . IA 6 HOH A 2 274 2 HOH HOH . IA 6 HOH A 3 275 3 HOH HOH . IA 6 HOH A 4 276 4 HOH HOH . IA 6 HOH A 5 277 5 HOH HOH . IA 6 HOH A 6 278 6 HOH HOH . IA 6 HOH A 7 279 7 HOH HOH . IA 6 HOH A 8 280 8 HOH HOH . IA 6 HOH A 9 281 9 HOH HOH . IA 6 HOH A 10 282 10 HOH HOH . IA 6 HOH A 11 283 11 HOH HOH . IA 6 HOH A 12 284 12 HOH HOH . IA 6 HOH A 13 285 13 HOH HOH . IA 6 HOH A 14 286 14 HOH HOH . IA 6 HOH A 15 287 15 HOH HOH . IA 6 HOH A 16 288 16 HOH HOH . IA 6 HOH A 17 289 17 HOH HOH . IA 6 HOH A 18 290 18 HOH HOH . IA 6 HOH A 19 291 19 HOH HOH . IA 6 HOH A 20 292 20 HOH HOH . IA 6 HOH A 21 293 21 HOH HOH . IA 6 HOH A 22 294 22 HOH HOH . IA 6 HOH A 23 295 23 HOH HOH . IA 6 HOH A 24 296 24 HOH HOH . IA 6 HOH A 25 297 25 HOH HOH . IA 6 HOH A 26 298 26 HOH HOH . IA 6 HOH A 27 299 27 HOH HOH . IA 6 HOH A 28 300 28 HOH HOH . IA 6 HOH A 29 301 29 HOH HOH . IA 6 HOH A 30 302 30 HOH HOH . IA 6 HOH A 31 303 31 HOH HOH . IA 6 HOH A 32 304 32 HOH HOH . IA 6 HOH A 33 305 33 HOH HOH . IA 6 HOH A 34 306 34 HOH HOH . IA 6 HOH A 35 307 35 HOH HOH . IA 6 HOH A 36 308 36 HOH HOH . IA 6 HOH A 37 309 37 HOH HOH . IA 6 HOH A 38 310 38 HOH HOH . IA 6 HOH A 39 311 39 HOH HOH . IA 6 HOH A 40 312 40 HOH HOH . IA 6 HOH A 41 313 41 HOH HOH . IA 6 HOH A 42 314 42 HOH HOH . IA 6 HOH A 43 315 43 HOH HOH . IA 6 HOH A 44 316 44 HOH HOH . IA 6 HOH A 45 317 45 HOH HOH . IA 6 HOH A 46 318 46 HOH HOH . IA 6 HOH A 47 319 47 HOH HOH . IA 6 HOH A 48 320 48 HOH HOH . IA 6 HOH A 49 321 49 HOH HOH . IA 6 HOH A 50 322 50 HOH HOH . IA 6 HOH A 51 323 51 HOH HOH . IA 6 HOH A 52 324 52 HOH HOH . IA 6 HOH A 53 325 53 HOH HOH . IA 6 HOH A 54 326 54 HOH HOH . IA 6 HOH A 55 327 55 HOH HOH . IA 6 HOH A 56 328 56 HOH HOH . IA 6 HOH A 57 329 57 HOH HOH . IA 6 HOH A 58 330 58 HOH HOH . IA 6 HOH A 59 331 59 HOH HOH . IA 6 HOH A 60 332 60 HOH HOH . IA 6 HOH A 61 333 61 HOH HOH . IA 6 HOH A 62 334 62 HOH HOH . IA 6 HOH A 63 335 63 HOH HOH . IA 6 HOH A 64 336 64 HOH HOH . IA 6 HOH A 65 337 65 HOH HOH . IA 6 HOH A 66 338 66 HOH HOH . IA 6 HOH A 67 339 67 HOH HOH . IA 6 HOH A 68 340 68 HOH HOH . IA 6 HOH A 69 341 69 HOH HOH . IA 6 HOH A 70 342 70 HOH HOH . IA 6 HOH A 71 343 71 HOH HOH . IA 6 HOH A 72 344 72 HOH HOH . IA 6 HOH A 73 345 73 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 BOG . A . C 3 30.564 15.899 14.038 0.55 59.83 ? C1 BOG 241 A 1 HETATM 2 C C1 BOG . B . C 3 30.647 15.676 14.127 0.45 59.21 ? C1 BOG 241 A 1 HETATM 3 O O1 BOG . A . C 3 30.615 17.323 13.932 0.55 57.4 ? O1 BOG 241 A 1 HETATM 4 O O1 BOG . B . C 3 30.634 17.101 14.243 0.45 57.24 ? O1 BOG 241 A 1 HETATM 5 C C2 BOG . A . C 3 31.712 15.359 14.909 0.55 61.26 ? C2 BOG 241 A 1 HETATM 6 C C2 BOG . B . C 3 31.655 15.132 15.172 0.45 60.16 ? C2 BOG 241 A 1 HETATM 7 O O2 BOG . A . C 3 32.977 15.716 14.34 0.55 60.06 ? O2 BOG 241 A 1 HETATM 8 O O2 BOG . B . C 3 32.962 15.666 14.898 0.45 58.68 ? O2 BOG 241 A 1 HETATM 9 C C3 BOG . A . C 3 31.604 13.831 15.04 0.55 61.95 ? C3 BOG 241 A 1 HETATM 10 C C3 BOG . B . C 3 31.67 13.577 15.096 0.45 60.82 ? C3 BOG 241 A 1 HETATM 11 O O3 BOG . A . C 3 32.549 13.354 16.004 0.55 62.41 ? O3 BOG 241 A 1 HETATM 12 O O3 BOG . B . C 3 32.611 13.041 16.041 0.45 61.08 ? O3 BOG 241 A 1 HETATM 13 C C4 BOG . A . C 3 30.177 13.416 15.438 0.55 62.68 ? C4 BOG 241 A 1 HETATM 14 C C4 BOG . B . C 3 30.219 13.061 15.398 0.45 61.67 ? C4 BOG 241 A 1 HETATM 15 O O4 BOG . A . C 3 30.065 11.994 15.357 0.55 64.44 ? O4 BOG 241 A 1 HETATM 16 O O4 BOG . B . C 3 30.176 11.624 15.355 0.45 62.87 ? O4 BOG 241 A 1 HETATM 17 C C5 BOG . A . C 3 29.136 14.083 14.518 0.55 62.67 ? C5 BOG 241 A 1 HETATM 18 C C5 BOG . B . C 3 29.231 13.687 14.333 0.45 61.85 ? C5 BOG 241 A 1 HETATM 19 O O5 BOG . A . C 3 29.307 15.509 14.624 0.55 61.14 ? O5 BOG 241 A 1 HETATM 20 O O5 BOG . B . C 3 29.295 15.147 14.405 0.45 60.68 ? O5 BOG 241 A 1 HETATM 21 C C6 BOG . A . C 3 27.683 13.739 14.871 0.55 62.47 ? C6 BOG 241 A 1 HETATM 22 C C6 BOG . B . C 3 27.776 13.212 14.613 0.45 62.03 ? C6 BOG 241 A 1 HETATM 23 O O6 BOG . A . C 3 27.006 13.264 13.702 0.55 63.36 ? O6 BOG 241 A 1 HETATM 24 O O6 BOG . B . C 3 26.86 13.764 13.643 0.45 63.22 ? O6 BOG 241 A 1 HETATM 25 C C1' BOG . A . C 3 29.584 17.743 13.05 0.55 52.63 ? C1' BOG 241 A 1 HETATM 26 C C1' BOG . B . C 3 29.775 17.701 13.279 0.45 52.8 ? C1' BOG 241 A 1 HETATM 27 C C2' BOG . A . C 3 29.067 19.118 13.422 0.55 48.7 ? C2' BOG 241 A 1 HETATM 28 C C2' BOG . B . C 3 29.83 19.161 13.636 0.45 49.41 ? C2' BOG 241 A 1 HETATM 29 C C3' BOG . A . C 3 30.026 20.151 12.872 0.55 44.96 ? C3' BOG 241 A 1 HETATM 30 C C3' BOG . B . C 3 28.996 20.049 12.766 0.45 45.67 ? C3' BOG 241 A 1 HETATM 31 C C4' BOG . A . C 3 29.261 21.189 12.072 0.55 42.97 ? C4' BOG 241 A 1 HETATM 32 C C4' BOG . B . C 3 29.172 21.372 13.457 0.45 43.03 ? C4' BOG 241 A 1 HETATM 33 C C5' BOG . A . C 3 29.391 22.541 12.749 0.55 40.71 ? C5' BOG 241 A 1 HETATM 34 C C5' BOG . B . C 3 28.373 22.431 12.799 0.45 42.51 ? C5' BOG 241 A 1 HETATM 35 C C6' BOG . A . C 3 28.113 22.884 13.479 0.55 41.46 ? C6' BOG 241 A 1 HETATM 36 C C6' BOG . B . C 3 28.553 23.657 13.652 0.45 41.58 ? C6' BOG 241 A 1 HETATM 37 C C7' BOG . A . C 3 27.827 24.37 13.312 0.55 40.11 ? C7' BOG 241 A 1 HETATM 38 C C7' BOG . B . C 3 27.725 24.774 13.082 0.45 40.67 ? C7' BOG 241 A 1 HETATM 39 C C8' BOG . A . C 3 26.569 24.749 14.064 0.55 38.13 ? C8' BOG 241 A 1 HETATM 40 C C8' BOG . B . C 3 27.87 25.983 13.975 0.45 39.34 ? C8' BOG 241 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 22 _model_server_stats.query_time_ms 1241 _model_server_stats.encode_time_ms 12 _model_server_stats.element_count 40 #