data_3QDC # _model_server_result.job_id wEGfHmSWHO_VySByGC5Sxg _model_server_result.datetime_utc '2024-11-15 02:56:47' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3qdc # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"P","auth_seq_id":254}' # _entry.id 3QDC # _exptl.entry_id 3QDC _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 282.547 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description EICOSANE _entity.pdbx_number_of_molecules 29 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3QDC _cell.length_a 86.44 _cell.length_b 131.09 _cell.length_c 51.23 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3QDC _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 D N N ? 4 E N N ? 4 F N N ? 4 G N N ? 4 H N N ? 4 I N N ? 4 J N N ? 4 K N N ? 4 L N N ? 4 M N N ? 4 N N N ? 4 O N N ? 4 P N N ? 4 Q N N ? 4 R N N ? 4 T N N ? 4 U N N ? 4 W N N ? 4 X N N ? 4 Y N N ? 4 Z N N ? 4 AA N N ? 4 BA N N ? 4 CA N N ? 4 DA N N ? 4 EA N N ? 4 FA N N ? 4 GA N N ? 4 HA N N # _chem_comp.formula 'C20 H42' _chem_comp.formula_weight 282.547 _chem_comp.id LFA _chem_comp.mon_nstd_flag . _chem_comp.name EICOSANE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'LIPID FRAGMENT' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 LFA sing 362 n n C1 H11 LFA sing 363 n n C1 H12 LFA sing 364 n n C1 H13 LFA sing 365 n n C2 C3 LFA sing 366 n n C2 H21 LFA sing 367 n n C2 H22 LFA sing 368 n n C3 C4 LFA sing 369 n n C3 H31 LFA sing 370 n n C3 H32 LFA sing 371 n n C4 C5 LFA sing 372 n n C4 H41 LFA sing 373 n n C4 H42 LFA sing 374 n n C5 C6 LFA sing 375 n n C5 H51 LFA sing 376 n n C5 H52 LFA sing 377 n n C6 C7 LFA sing 378 n n C6 H61 LFA sing 379 n n C6 H62 LFA sing 380 n n C7 C8 LFA sing 381 n n C7 H71 LFA sing 382 n n C7 H72 LFA sing 383 n n C8 C9 LFA sing 384 n n C8 H81 LFA sing 385 n n C8 H82 LFA sing 386 n n C9 C10 LFA sing 387 n n C9 H91 LFA sing 388 n n C9 H92 LFA sing 389 n n C10 C11 LFA sing 390 n n C10 H101 LFA sing 391 n n C10 H102 LFA sing 392 n n C11 C12 LFA sing 393 n n C11 H111 LFA sing 394 n n C11 H112 LFA sing 395 n n C12 C13 LFA sing 396 n n C12 H121 LFA sing 397 n n C12 H122 LFA sing 398 n n C13 C14 LFA sing 399 n n C13 H131 LFA sing 400 n n C13 H132 LFA sing 401 n n C14 C15 LFA sing 402 n n C14 H141 LFA sing 403 n n C14 H142 LFA sing 404 n n C15 C16 LFA sing 405 n n C15 H151 LFA sing 406 n n C15 H152 LFA sing 407 n n C16 C17 LFA sing 408 n n C16 H161 LFA sing 409 n n C16 H162 LFA sing 410 n n C17 C18 LFA sing 411 n n C17 H171 LFA sing 412 n n C17 H172 LFA sing 413 n n C18 C19 LFA sing 414 n n C18 H181 LFA sing 415 n n C18 H182 LFA sing 416 n n C19 C20 LFA sing 417 n n C19 H191 LFA sing 418 n n C19 H192 LFA sing 419 n n C20 H201 LFA sing 420 n n C20 H202 LFA sing 421 n n C20 H203 LFA sing 422 n n # _atom_sites.entry_id 3QDC _atom_sites.fract_transf_matrix[1][1] 0.011569 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007628 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01952 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 RET A 1 240 205 RET RET . C 3 BOG A 1 241 1 BOG BOG . D 4 LFA A 1 242 2 LFA LFA . E 4 LFA A 1 243 3 LFA LFA . F 4 LFA A 1 244 4 LFA LFA . G 4 LFA A 1 245 5 LFA LFA . H 4 LFA A 1 246 6 LFA LFA . I 4 LFA A 1 247 7 LFA LFA . J 4 LFA A 1 248 8 LFA LFA . K 4 LFA A 1 249 9 LFA LFA . L 4 LFA A 1 250 10 LFA LFA . M 4 LFA A 1 251 11 LFA LFA . N 4 LFA A 1 252 12 LFA LFA . O 4 LFA A 1 253 13 LFA LFA . P 4 LFA A 1 254 14 LFA LFA . Q 4 LFA A 1 255 15 LFA LFA . R 4 LFA A 1 256 16 LFA LFA . S 5 L2P A 1 257 17 L2P L2P . T 4 LFA A 1 258 18 LFA LFA . U 4 LFA A 1 259 19 LFA LFA . V 5 L2P A 1 260 20 L2P L2P . W 4 LFA A 1 261 21 LFA LFA . X 4 LFA A 1 262 22 LFA LFA . Y 4 LFA A 1 263 23 LFA LFA . Z 4 LFA A 1 264 24 LFA LFA . AA 4 LFA A 1 265 25 LFA LFA . BA 4 LFA A 1 266 26 LFA LFA . CA 4 LFA A 1 267 27 LFA LFA . DA 4 LFA A 1 268 28 LFA LFA . EA 4 LFA A 1 269 29 LFA LFA . FA 4 LFA A 1 270 30 LFA LFA . GA 4 LFA A 1 271 31 LFA LFA . HA 4 LFA A 1 272 32 LFA LFA . IA 6 HOH A 1 273 1 HOH HOH . IA 6 HOH A 2 274 2 HOH HOH . IA 6 HOH A 3 275 3 HOH HOH . IA 6 HOH A 4 276 4 HOH HOH . IA 6 HOH A 5 277 5 HOH HOH . IA 6 HOH A 6 278 6 HOH HOH . IA 6 HOH A 7 279 7 HOH HOH . IA 6 HOH A 8 280 8 HOH HOH . IA 6 HOH A 9 281 9 HOH HOH . IA 6 HOH A 10 282 10 HOH HOH . IA 6 HOH A 11 283 11 HOH HOH . IA 6 HOH A 12 284 12 HOH HOH . IA 6 HOH A 13 285 13 HOH HOH . IA 6 HOH A 14 286 14 HOH HOH . IA 6 HOH A 15 287 15 HOH HOH . IA 6 HOH A 16 288 16 HOH HOH . IA 6 HOH A 17 289 17 HOH HOH . IA 6 HOH A 18 290 18 HOH HOH . IA 6 HOH A 19 291 19 HOH HOH . IA 6 HOH A 20 292 20 HOH HOH . IA 6 HOH A 21 293 21 HOH HOH . IA 6 HOH A 22 294 22 HOH HOH . IA 6 HOH A 23 295 23 HOH HOH . IA 6 HOH A 24 296 24 HOH HOH . IA 6 HOH A 25 297 25 HOH HOH . IA 6 HOH A 26 298 26 HOH HOH . IA 6 HOH A 27 299 27 HOH HOH . IA 6 HOH A 28 300 28 HOH HOH . IA 6 HOH A 29 301 29 HOH HOH . IA 6 HOH A 30 302 30 HOH HOH . IA 6 HOH A 31 303 31 HOH HOH . IA 6 HOH A 32 304 32 HOH HOH . IA 6 HOH A 33 305 33 HOH HOH . IA 6 HOH A 34 306 34 HOH HOH . IA 6 HOH A 35 307 35 HOH HOH . IA 6 HOH A 36 308 36 HOH HOH . IA 6 HOH A 37 309 37 HOH HOH . IA 6 HOH A 38 310 38 HOH HOH . IA 6 HOH A 39 311 39 HOH HOH . IA 6 HOH A 40 312 40 HOH HOH . IA 6 HOH A 41 313 41 HOH HOH . IA 6 HOH A 42 314 42 HOH HOH . IA 6 HOH A 43 315 43 HOH HOH . IA 6 HOH A 44 316 44 HOH HOH . IA 6 HOH A 45 317 45 HOH HOH . IA 6 HOH A 46 318 46 HOH HOH . IA 6 HOH A 47 319 47 HOH HOH . IA 6 HOH A 48 320 48 HOH HOH . IA 6 HOH A 49 321 49 HOH HOH . IA 6 HOH A 50 322 50 HOH HOH . IA 6 HOH A 51 323 51 HOH HOH . IA 6 HOH A 52 324 52 HOH HOH . IA 6 HOH A 53 325 53 HOH HOH . IA 6 HOH A 54 326 54 HOH HOH . IA 6 HOH A 55 327 55 HOH HOH . IA 6 HOH A 56 328 56 HOH HOH . IA 6 HOH A 57 329 57 HOH HOH . IA 6 HOH A 58 330 58 HOH HOH . IA 6 HOH A 59 331 59 HOH HOH . IA 6 HOH A 60 332 60 HOH HOH . IA 6 HOH A 61 333 61 HOH HOH . IA 6 HOH A 62 334 62 HOH HOH . IA 6 HOH A 63 335 63 HOH HOH . IA 6 HOH A 64 336 64 HOH HOH . IA 6 HOH A 65 337 65 HOH HOH . IA 6 HOH A 66 338 66 HOH HOH . IA 6 HOH A 67 339 67 HOH HOH . IA 6 HOH A 68 340 68 HOH HOH . IA 6 HOH A 69 341 69 HOH HOH . IA 6 HOH A 70 342 70 HOH HOH . IA 6 HOH A 71 343 71 HOH HOH . IA 6 HOH A 72 344 72 HOH HOH . IA 6 HOH A 73 345 73 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 LFA . A . P 4 29.328 44.404 13.227 0.55 50.95 ? C1 LFA 254 A 1 HETATM 2 C C1 LFA . B . P 4 29.372 44.255 12.997 0.45 47.1 ? C1 LFA 254 A 1 HETATM 3 C C2 LFA . A . P 4 28.982 43.164 14.062 0.55 51.18 ? C2 LFA 254 A 1 HETATM 4 C C2 LFA . B . P 4 28.986 43.222 14.058 0.45 47.43 ? C2 LFA 254 A 1 HETATM 5 C C3 LFA . A . P 4 30.265 42.409 14.455 0.55 49.29 ? C3 LFA 254 A 1 HETATM 6 C C3 LFA . B . P 4 30.216 42.447 14.534 0.45 45.81 ? C3 LFA 254 A 1 HETATM 7 C C4 LFA . A . P 4 30.759 41.5 13.319 0.55 48.19 ? C4 LFA 254 A 1 HETATM 8 C C4 LFA . B . P 4 30.844 41.648 13.389 0.45 44.39 ? C4 LFA 254 A 1 HETATM 9 C C5 LFA . A . P 4 29.795 40.354 13.007 0.55 47.32 ? C5 LFA 254 A 1 HETATM 10 C C5 LFA . B . P 4 29.962 40.472 12.963 0.45 43.63 ? C5 LFA 254 A 1 HETATM 11 C C6 LFA . A . P 4 30.538 39.124 12.501 0.55 46.71 ? C6 LFA 254 A 1 HETATM 12 C C6 LFA . B . P 4 30.612 39.73 11.794 0.45 42.17 ? C6 LFA 254 A 1 HETATM 13 C C7 LFA . A . P 4 29.976 38.651 11.165 0.55 46.12 ? C7 LFA 254 A 1 HETATM 14 C C7 LFA . B . P 4 29.874 38.437 11.447 0.45 43.08 ? C7 LFA 254 A 1 HETATM 15 C C8 LFA . A . P 4 30.386 37.206 10.88 0.55 48.37 ? C8 LFA 254 A 1 HETATM 16 C C8 LFA . B . P 4 30.5 37.789 10.211 0.45 44.66 ? C8 LFA 254 A 1 HETATM 17 C C9 LFA . A . P 4 29.798 36.721 9.547 0.55 49.08 ? C9 LFA 254 A 1 HETATM 18 C C9 LFA . B . P 4 29.933 36.391 9.954 0.45 46.62 ? C9 LFA 254 A 1 HETATM 19 C C10 LFA . A . P 4 30.739 35.735 8.851 0.55 51.14 ? C10 LFA 254 A 1 HETATM 20 C C10 LFA . B . P 4 30.427 35.848 8.611 0.45 48.04 ? C10 LFA 254 A 1 HETATM 21 C C11 LFA . A . P 4 30.083 34.367 8.657 0.55 52.18 ? C11 LFA 254 A 1 HETATM 22 C C11 LFA . B . P 4 30.015 34.389 8.405 0.45 49.65 ? C11 LFA 254 A 1 HETATM 23 C C12 LFA . A . P 4 30.562 33.371 9.721 0.55 53.41 ? C12 LFA 254 A 1 HETATM 24 C C12 LFA . B . P 4 30.857 33.439 9.26 0.45 51.37 ? C12 LFA 254 A 1 HETATM 25 C C13 LFA . A . P 4 30.64 31.954 9.145 0.55 54.49 ? C13 LFA 254 A 1 HETATM 26 C C13 LFA . B . P 4 30.433 31.988 9.021 0.45 52.47 ? C13 LFA 254 A 1 HETATM 27 C C14 LFA . A . P 4 31.817 31.188 9.759 0.55 55.88 ? C14 LFA 254 A 1 HETATM 28 C C14 LFA . B . P 4 31.434 30.995 9.617 0.45 54.53 ? C14 LFA 254 A 1 HETATM 29 C C15 LFA . A . P 4 32.939 30.96 8.736 0.55 56.61 ? C15 LFA 254 A 1 HETATM 30 C C15 LFA . B . P 4 32.782 31.069 8.896 0.45 55.1 ? C15 LFA 254 A 1 HETATM 31 C C16 LFA . A . P 4 33.552 29.56 8.875 0.55 55.92 ? C16 LFA 254 A 1 HETATM 32 C C16 LFA . B . P 4 33.723 29.962 9.376 0.45 54.93 ? C16 LFA 254 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 283 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 32 #