data_3QDC # _model_server_result.job_id B44n7ohCX_gBtfrG9Oc8NQ _model_server_result.datetime_utc '2024-11-15 03:20:49' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3qdc # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"V","auth_seq_id":260}' # _entry.id 3QDC # _exptl.entry_id 3QDC _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 653.157 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2,3-DI-PHYTANYL-GLYCEROL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3QDC _cell.length_a 86.44 _cell.length_b 131.09 _cell.length_c 51.23 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3QDC _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 S N N ? 5 V N N # _chem_comp.formula 'C43 H88 O3' _chem_comp.formula_weight 653.157 _chem_comp.id L2P _chem_comp.mon_nstd_flag . _chem_comp.name 2,3-DI-PHYTANYL-GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 1,2-DI-1-(3,7,11,15-TETRAMETHYL-HEXADECANE)-SN-GLYCEROL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 L2P sing 208 n n C1 C2 L2P sing 209 n n C1 H12 L2P sing 210 n n C1 H11 L2P sing 211 n n O1 C11 L2P sing 212 n n C2 O2 L2P sing 213 n n C2 C3 L2P sing 214 n n C2 H2 L2P sing 215 n n O2 C41 L2P sing 216 n n C3 O3 L2P sing 217 n n C3 H32 L2P sing 218 n n C3 H31 L2P sing 219 n n O3 H3O L2P sing 220 n n C11 C12 L2P sing 221 n n C11 H112 L2P sing 222 n n C11 H111 L2P sing 223 n n C12 C13 L2P sing 224 n n C12 H122 L2P sing 225 n n C12 H121 L2P sing 226 n n C13 C14 L2P sing 227 n n C13 C15 L2P sing 228 n n C13 H13 L2P sing 229 n n C14 H143 L2P sing 230 n n C14 H142 L2P sing 231 n n C14 H141 L2P sing 232 n n C15 C16 L2P sing 233 n n C15 H152 L2P sing 234 n n C15 H151 L2P sing 235 n n C16 C17 L2P sing 236 n n C16 H162 L2P sing 237 n n C16 H161 L2P sing 238 n n C17 C18 L2P sing 239 n n C17 H172 L2P sing 240 n n C17 H171 L2P sing 241 n n C18 C19 L2P sing 242 n n C18 C20 L2P sing 243 n n C18 H18 L2P sing 244 n n C19 H193 L2P sing 245 n n C19 H192 L2P sing 246 n n C19 H191 L2P sing 247 n n C20 C21 L2P sing 248 n n C20 H202 L2P sing 249 n n C20 H201 L2P sing 250 n n C21 C22 L2P sing 251 n n C21 H212 L2P sing 252 n n C21 H211 L2P sing 253 n n C22 C23 L2P sing 254 n n C22 H222 L2P sing 255 n n C22 H221 L2P sing 256 n n C23 C24 L2P sing 257 n n C23 C25 L2P sing 258 n n C23 H23 L2P sing 259 n n C24 H243 L2P sing 260 n n C24 H242 L2P sing 261 n n C24 H241 L2P sing 262 n n C25 C26 L2P sing 263 n n C25 H252 L2P sing 264 n n C25 H251 L2P sing 265 n n C26 C27 L2P sing 266 n n C26 H262 L2P sing 267 n n C26 H261 L2P sing 268 n n C27 C28 L2P sing 269 n n C27 H272 L2P sing 270 n n C27 H271 L2P sing 271 n n C28 C29 L2P sing 272 n n C28 C30 L2P sing 273 n n C28 H28 L2P sing 274 n n C29 H293 L2P sing 275 n n C29 H292 L2P sing 276 n n C29 H291 L2P sing 277 n n C30 H303 L2P sing 278 n n C30 H302 L2P sing 279 n n C30 H301 L2P sing 280 n n C41 C42 L2P sing 281 n n C41 H412 L2P sing 282 n n C41 H411 L2P sing 283 n n C42 C43 L2P sing 284 n n C42 H422 L2P sing 285 n n C42 H421 L2P sing 286 n n C43 C44 L2P sing 287 n n C43 C45 L2P sing 288 n n C43 H43 L2P sing 289 n n C44 H443 L2P sing 290 n n C44 H442 L2P sing 291 n n C44 H441 L2P sing 292 n n C45 C46 L2P sing 293 n n C45 H452 L2P sing 294 n n C45 H451 L2P sing 295 n n C46 C47 L2P sing 296 n n C46 H462 L2P sing 297 n n C46 H461 L2P sing 298 n n C47 C48 L2P sing 299 n n C47 H472 L2P sing 300 n n C47 H471 L2P sing 301 n n C48 C49 L2P sing 302 n n C48 C50 L2P sing 303 n n C48 H48 L2P sing 304 n n C49 H493 L2P sing 305 n n C49 H492 L2P sing 306 n n C49 H491 L2P sing 307 n n C50 C51 L2P sing 308 n n C50 H502 L2P sing 309 n n C50 H501 L2P sing 310 n n C51 C52 L2P sing 311 n n C51 H512 L2P sing 312 n n C51 H511 L2P sing 313 n n C52 C53 L2P sing 314 n n C52 H522 L2P sing 315 n n C52 H521 L2P sing 316 n n C53 C54 L2P sing 317 n n C53 C55 L2P sing 318 n n C53 H53 L2P sing 319 n n C54 H543 L2P sing 320 n n C54 H542 L2P sing 321 n n C54 H541 L2P sing 322 n n C55 C56 L2P sing 323 n n C55 H552 L2P sing 324 n n C55 H551 L2P sing 325 n n C56 C57 L2P sing 326 n n C56 H562 L2P sing 327 n n C56 H561 L2P sing 328 n n C57 C58 L2P sing 329 n n C57 H572 L2P sing 330 n n C57 H571 L2P sing 331 n n C58 C59 L2P sing 332 n n C58 C60 L2P sing 333 n n C58 H58 L2P sing 334 n n C59 H593 L2P sing 335 n n C59 H592 L2P sing 336 n n C59 H591 L2P sing 337 n n C60 H603 L2P sing 338 n n C60 H602 L2P sing 339 n n C60 H601 L2P sing 340 n n # _atom_sites.entry_id 3QDC _atom_sites.fract_transf_matrix[1][1] 0.011569 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007628 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01952 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 RET A 1 240 205 RET RET . C 3 BOG A 1 241 1 BOG BOG . D 4 LFA A 1 242 2 LFA LFA . E 4 LFA A 1 243 3 LFA LFA . F 4 LFA A 1 244 4 LFA LFA . G 4 LFA A 1 245 5 LFA LFA . H 4 LFA A 1 246 6 LFA LFA . I 4 LFA A 1 247 7 LFA LFA . J 4 LFA A 1 248 8 LFA LFA . K 4 LFA A 1 249 9 LFA LFA . L 4 LFA A 1 250 10 LFA LFA . M 4 LFA A 1 251 11 LFA LFA . N 4 LFA A 1 252 12 LFA LFA . O 4 LFA A 1 253 13 LFA LFA . P 4 LFA A 1 254 14 LFA LFA . Q 4 LFA A 1 255 15 LFA LFA . R 4 LFA A 1 256 16 LFA LFA . S 5 L2P A 1 257 17 L2P L2P . T 4 LFA A 1 258 18 LFA LFA . U 4 LFA A 1 259 19 LFA LFA . V 5 L2P A 1 260 20 L2P L2P . W 4 LFA A 1 261 21 LFA LFA . X 4 LFA A 1 262 22 LFA LFA . Y 4 LFA A 1 263 23 LFA LFA . Z 4 LFA A 1 264 24 LFA LFA . AA 4 LFA A 1 265 25 LFA LFA . BA 4 LFA A 1 266 26 LFA LFA . CA 4 LFA A 1 267 27 LFA LFA . DA 4 LFA A 1 268 28 LFA LFA . EA 4 LFA A 1 269 29 LFA LFA . FA 4 LFA A 1 270 30 LFA LFA . GA 4 LFA A 1 271 31 LFA LFA . HA 4 LFA A 1 272 32 LFA LFA . IA 6 HOH A 1 273 1 HOH HOH . IA 6 HOH A 2 274 2 HOH HOH . IA 6 HOH A 3 275 3 HOH HOH . IA 6 HOH A 4 276 4 HOH HOH . IA 6 HOH A 5 277 5 HOH HOH . IA 6 HOH A 6 278 6 HOH HOH . IA 6 HOH A 7 279 7 HOH HOH . IA 6 HOH A 8 280 8 HOH HOH . IA 6 HOH A 9 281 9 HOH HOH . IA 6 HOH A 10 282 10 HOH HOH . IA 6 HOH A 11 283 11 HOH HOH . IA 6 HOH A 12 284 12 HOH HOH . IA 6 HOH A 13 285 13 HOH HOH . IA 6 HOH A 14 286 14 HOH HOH . IA 6 HOH A 15 287 15 HOH HOH . IA 6 HOH A 16 288 16 HOH HOH . IA 6 HOH A 17 289 17 HOH HOH . IA 6 HOH A 18 290 18 HOH HOH . IA 6 HOH A 19 291 19 HOH HOH . IA 6 HOH A 20 292 20 HOH HOH . IA 6 HOH A 21 293 21 HOH HOH . IA 6 HOH A 22 294 22 HOH HOH . IA 6 HOH A 23 295 23 HOH HOH . IA 6 HOH A 24 296 24 HOH HOH . IA 6 HOH A 25 297 25 HOH HOH . IA 6 HOH A 26 298 26 HOH HOH . IA 6 HOH A 27 299 27 HOH HOH . IA 6 HOH A 28 300 28 HOH HOH . IA 6 HOH A 29 301 29 HOH HOH . IA 6 HOH A 30 302 30 HOH HOH . IA 6 HOH A 31 303 31 HOH HOH . IA 6 HOH A 32 304 32 HOH HOH . IA 6 HOH A 33 305 33 HOH HOH . IA 6 HOH A 34 306 34 HOH HOH . IA 6 HOH A 35 307 35 HOH HOH . IA 6 HOH A 36 308 36 HOH HOH . IA 6 HOH A 37 309 37 HOH HOH . IA 6 HOH A 38 310 38 HOH HOH . IA 6 HOH A 39 311 39 HOH HOH . IA 6 HOH A 40 312 40 HOH HOH . IA 6 HOH A 41 313 41 HOH HOH . IA 6 HOH A 42 314 42 HOH HOH . IA 6 HOH A 43 315 43 HOH HOH . IA 6 HOH A 44 316 44 HOH HOH . IA 6 HOH A 45 317 45 HOH HOH . IA 6 HOH A 46 318 46 HOH HOH . IA 6 HOH A 47 319 47 HOH HOH . IA 6 HOH A 48 320 48 HOH HOH . IA 6 HOH A 49 321 49 HOH HOH . IA 6 HOH A 50 322 50 HOH HOH . IA 6 HOH A 51 323 51 HOH HOH . IA 6 HOH A 52 324 52 HOH HOH . IA 6 HOH A 53 325 53 HOH HOH . IA 6 HOH A 54 326 54 HOH HOH . IA 6 HOH A 55 327 55 HOH HOH . IA 6 HOH A 56 328 56 HOH HOH . IA 6 HOH A 57 329 57 HOH HOH . IA 6 HOH A 58 330 58 HOH HOH . IA 6 HOH A 59 331 59 HOH HOH . IA 6 HOH A 60 332 60 HOH HOH . IA 6 HOH A 61 333 61 HOH HOH . IA 6 HOH A 62 334 62 HOH HOH . IA 6 HOH A 63 335 63 HOH HOH . IA 6 HOH A 64 336 64 HOH HOH . IA 6 HOH A 65 337 65 HOH HOH . IA 6 HOH A 66 338 66 HOH HOH . IA 6 HOH A 67 339 67 HOH HOH . IA 6 HOH A 68 340 68 HOH HOH . IA 6 HOH A 69 341 69 HOH HOH . IA 6 HOH A 70 342 70 HOH HOH . IA 6 HOH A 71 343 71 HOH HOH . IA 6 HOH A 72 344 72 HOH HOH . IA 6 HOH A 73 345 73 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C41 L2P . A . V 5 28.658 20.687 0.365 0.55 64.01 ? C41 L2P 260 A 1 HETATM 2 C C41 L2P . B . V 5 29.25 21.432 0.902 0.45 62.9 ? C41 L2P 260 A 1 HETATM 3 C C42 L2P . A . V 5 29.143 21.966 -0.324 0.55 65 ? C42 L2P 260 A 1 HETATM 4 C C42 L2P . B . V 5 29.121 22.285 -0.362 0.45 64.1 ? C42 L2P 260 A 1 HETATM 5 C C43 L2P . A . V 5 28.052 23.048 -0.265 0.55 64.76 ? C43 L2P 260 A 1 HETATM 6 C C43 L2P . B . V 5 27.975 23.287 -0.203 0.45 63.8 ? C43 L2P 260 A 1 HETATM 7 C C44 L2P . A . V 5 27.574 23.439 -1.675 0.55 65.13 ? C44 L2P 260 A 1 HETATM 8 C C44 L2P . B . V 5 27.609 23.878 -1.566 0.45 64.37 ? C44 L2P 260 A 1 HETATM 9 C C45 L2P . A . V 5 28.597 24.259 0.503 0.55 63.94 ? C45 L2P 260 A 1 HETATM 10 C C45 L2P . B . V 5 28.358 24.387 0.793 0.45 63.02 ? C45 L2P 260 A 1 HETATM 11 C C46 L2P . A . V 5 27.491 25.2 1.004 0.55 63.29 ? C46 L2P 260 A 1 HETATM 12 C C46 L2P . B . V 5 27.169 25.303 1.095 0.45 62.12 ? C46 L2P 260 A 1 HETATM 13 C C47 L2P . A . V 5 28.088 26.235 1.965 0.55 61.79 ? C47 L2P 260 A 1 HETATM 14 C C47 L2P . B . V 5 27.508 26.484 2.01 0.45 60.75 ? C47 L2P 260 A 1 HETATM 15 C C48 L2P . A . V 5 28.095 27.654 1.381 0.55 61.32 ? C48 L2P 260 A 1 HETATM 16 C C48 L2P . B . V 5 28.3 27.581 1.292 0.45 60.57 ? C48 L2P 260 A 1 HETATM 17 C C49 L2P . A . V 5 29.399 27.979 0.636 0.55 61.81 ? C49 L2P 260 A 1 HETATM 18 C C49 L2P . B . V 5 29.739 27.148 1.006 0.45 60.93 ? C49 L2P 260 A 1 HETATM 19 C C50 L2P . A . V 5 27.882 28.644 2.523 0.55 59.69 ? C50 L2P 260 A 1 HETATM 20 C C50 L2P . B . V 5 28.299 28.88 2.103 0.45 59.36 ? C50 L2P 260 A 1 HETATM 21 C C51 L2P . A . V 5 26.653 29.521 2.294 0.55 58.65 ? C51 L2P 260 A 1 HETATM 22 C C51 L2P . B . V 5 26.92 29.544 2.095 0.45 58.16 ? C51 L2P 260 A 1 HETATM 23 C C52 L2P . A . V 5 26.968 30.996 2.57 0.55 56.54 ? C52 L2P 260 A 1 HETATM 24 C C52 L2P . B . V 5 26.986 31.019 2.502 0.45 56.85 ? C52 L2P 260 A 1 HETATM 25 C C53 L2P . A . V 5 27.165 31.332 4.055 0.55 55.35 ? C53 L2P 260 A 1 HETATM 26 C C53 L2P . B . V 5 27.233 31.241 3.996 0.45 56 ? C53 L2P 260 A 1 HETATM 27 C C54 L2P . A . V 5 25.991 30.856 4.912 0.55 56.57 ? C54 L2P 260 A 1 HETATM 28 C C54 L2P . B . V 5 26.103 30.639 4.833 0.45 57.14 ? C54 L2P 260 A 1 HETATM 29 C C55 L2P . A . V 5 27.331 32.845 4.212 0.55 54.44 ? C55 L2P 260 A 1 HETATM 30 C C55 L2P . B . V 5 27.334 32.747 4.25 0.45 55.67 ? C55 L2P 260 A 1 HETATM 31 C C56 L2P . A . V 5 28.769 33.316 4.005 0.55 52.91 ? C56 L2P 260 A 1 HETATM 32 C C56 L2P . B . V 5 28.674 33.303 3.766 0.45 54.88 ? C56 L2P 260 A 1 HETATM 33 C C57 L2P . A . V 5 28.776 34.726 3.407 0.55 52.13 ? C57 L2P 260 A 1 HETATM 34 C C57 L2P . B . V 5 28.632 34.827 3.623 0.45 54.57 ? C57 L2P 260 A 1 HETATM 35 C C58 L2P . A . V 5 30.14 35.411 3.552 0.55 51.24 ? C58 L2P 260 A 1 HETATM 36 C C58 L2P . B . V 5 30.035 35.394 3.396 0.45 54 ? C58 L2P 260 A 1 HETATM 37 C C59 L2P . A . V 5 30.336 36.458 2.453 0.55 49.51 ? C59 L2P 260 A 1 HETATM 38 C C59 L2P . B . V 5 29.968 36.819 2.844 0.45 52.9 ? C59 L2P 260 A 1 HETATM 39 C C60 L2P . A . V 5 30.315 36.055 4.93 0.55 50.38 ? C60 L2P 260 A 1 HETATM 40 C C60 L2P . B . V 5 30.818 35.388 4.71 0.45 54.1 ? C60 L2P 260 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 16 _model_server_stats.create_model_time_ms 14 _model_server_stats.query_time_ms 252 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 40 #