data_3QDC
#
_model_server_result.job_id            8TVDqkBhXRfTxWAin_PJ5A 
_model_server_result.datetime_utc      '2024-11-15 03:07:15' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3qdc 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"Y","auth_seq_id":263}' 
#
_entry.id    3QDC 
#
_exptl.entry_id    3QDC 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              282.547 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            EICOSANE 
_entity.pdbx_number_of_molecules    29 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            3QDC 
_cell.length_a            86.44 
_cell.length_b            131.09 
_cell.length_c            51.23 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3QDC 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        20 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 2 2 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 D N N 
? 4 E N N 
? 4 F N N 
? 4 G N N 
? 4 H N N 
? 4 I N N 
? 4 J N N 
? 4 K N N 
? 4 L N N 
? 4 M N N 
? 4 N N N 
? 4 O N N 
? 4 P N N 
? 4 Q N N 
? 4 R N N 
? 4 T N N 
? 4 U N N 
? 4 W N N 
? 4 X N N 
? 4 Y N N 
? 4 Z N N 
? 4 AA N N 
? 4 BA N N 
? 4 CA N N 
? 4 DA N N 
? 4 EA N N 
? 4 FA N N 
? 4 GA N N 
? 4 HA N N 
#
_chem_comp.formula           'C20 H42' 
_chem_comp.formula_weight    282.547 
_chem_comp.id                LFA 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              EICOSANE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'LIPID FRAGMENT' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 LFA sing 362 n n 
C1 H11 LFA sing 363 n n 
C1 H12 LFA sing 364 n n 
C1 H13 LFA sing 365 n n 
C2 C3 LFA sing 366 n n 
C2 H21 LFA sing 367 n n 
C2 H22 LFA sing 368 n n 
C3 C4 LFA sing 369 n n 
C3 H31 LFA sing 370 n n 
C3 H32 LFA sing 371 n n 
C4 C5 LFA sing 372 n n 
C4 H41 LFA sing 373 n n 
C4 H42 LFA sing 374 n n 
C5 C6 LFA sing 375 n n 
C5 H51 LFA sing 376 n n 
C5 H52 LFA sing 377 n n 
C6 C7 LFA sing 378 n n 
C6 H61 LFA sing 379 n n 
C6 H62 LFA sing 380 n n 
C7 C8 LFA sing 381 n n 
C7 H71 LFA sing 382 n n 
C7 H72 LFA sing 383 n n 
C8 C9 LFA sing 384 n n 
C8 H81 LFA sing 385 n n 
C8 H82 LFA sing 386 n n 
C9 C10 LFA sing 387 n n 
C9 H91 LFA sing 388 n n 
C9 H92 LFA sing 389 n n 
C10 C11 LFA sing 390 n n 
C10 H101 LFA sing 391 n n 
C10 H102 LFA sing 392 n n 
C11 C12 LFA sing 393 n n 
C11 H111 LFA sing 394 n n 
C11 H112 LFA sing 395 n n 
C12 C13 LFA sing 396 n n 
C12 H121 LFA sing 397 n n 
C12 H122 LFA sing 398 n n 
C13 C14 LFA sing 399 n n 
C13 H131 LFA sing 400 n n 
C13 H132 LFA sing 401 n n 
C14 C15 LFA sing 402 n n 
C14 H141 LFA sing 403 n n 
C14 H142 LFA sing 404 n n 
C15 C16 LFA sing 405 n n 
C15 H151 LFA sing 406 n n 
C15 H152 LFA sing 407 n n 
C16 C17 LFA sing 408 n n 
C16 H161 LFA sing 409 n n 
C16 H162 LFA sing 410 n n 
C17 C18 LFA sing 411 n n 
C17 H171 LFA sing 412 n n 
C17 H172 LFA sing 413 n n 
C18 C19 LFA sing 414 n n 
C18 H181 LFA sing 415 n n 
C18 H182 LFA sing 416 n n 
C19 C20 LFA sing 417 n n 
C19 H191 LFA sing 418 n n 
C19 H192 LFA sing 419 n n 
C20 H201 LFA sing 420 n n 
C20 H202 LFA sing 421 n n 
C20 H203 LFA sing 422 n n 
#
_atom_sites.entry_id                     3QDC 
_atom_sites.fract_transf_matrix[1][1]    0.011569 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.007628 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.01952 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 RET A 1 240 205 RET RET . 
C 3 BOG A 1 241 1 BOG BOG . 
D 4 LFA A 1 242 2 LFA LFA . 
E 4 LFA A 1 243 3 LFA LFA . 
F 4 LFA A 1 244 4 LFA LFA . 
G 4 LFA A 1 245 5 LFA LFA . 
H 4 LFA A 1 246 6 LFA LFA . 
I 4 LFA A 1 247 7 LFA LFA . 
J 4 LFA A 1 248 8 LFA LFA . 
K 4 LFA A 1 249 9 LFA LFA . 
L 4 LFA A 1 250 10 LFA LFA . 
M 4 LFA A 1 251 11 LFA LFA . 
N 4 LFA A 1 252 12 LFA LFA . 
O 4 LFA A 1 253 13 LFA LFA . 
P 4 LFA A 1 254 14 LFA LFA . 
Q 4 LFA A 1 255 15 LFA LFA . 
R 4 LFA A 1 256 16 LFA LFA . 
S 5 L2P A 1 257 17 L2P L2P . 
T 4 LFA A 1 258 18 LFA LFA . 
U 4 LFA A 1 259 19 LFA LFA . 
V 5 L2P A 1 260 20 L2P L2P . 
W 4 LFA A 1 261 21 LFA LFA . 
X 4 LFA A 1 262 22 LFA LFA . 
Y 4 LFA A 1 263 23 LFA LFA . 
Z 4 LFA A 1 264 24 LFA LFA . 
AA 4 LFA A 1 265 25 LFA LFA . 
BA 4 LFA A 1 266 26 LFA LFA . 
CA 4 LFA A 1 267 27 LFA LFA . 
DA 4 LFA A 1 268 28 LFA LFA . 
EA 4 LFA A 1 269 29 LFA LFA . 
FA 4 LFA A 1 270 30 LFA LFA . 
GA 4 LFA A 1 271 31 LFA LFA . 
HA 4 LFA A 1 272 32 LFA LFA . 
IA 6 HOH A 1 273 1 HOH HOH . 
IA 6 HOH A 2 274 2 HOH HOH . 
IA 6 HOH A 3 275 3 HOH HOH . 
IA 6 HOH A 4 276 4 HOH HOH . 
IA 6 HOH A 5 277 5 HOH HOH . 
IA 6 HOH A 6 278 6 HOH HOH . 
IA 6 HOH A 7 279 7 HOH HOH . 
IA 6 HOH A 8 280 8 HOH HOH . 
IA 6 HOH A 9 281 9 HOH HOH . 
IA 6 HOH A 10 282 10 HOH HOH . 
IA 6 HOH A 11 283 11 HOH HOH . 
IA 6 HOH A 12 284 12 HOH HOH . 
IA 6 HOH A 13 285 13 HOH HOH . 
IA 6 HOH A 14 286 14 HOH HOH . 
IA 6 HOH A 15 287 15 HOH HOH . 
IA 6 HOH A 16 288 16 HOH HOH . 
IA 6 HOH A 17 289 17 HOH HOH . 
IA 6 HOH A 18 290 18 HOH HOH . 
IA 6 HOH A 19 291 19 HOH HOH . 
IA 6 HOH A 20 292 20 HOH HOH . 
IA 6 HOH A 21 293 21 HOH HOH . 
IA 6 HOH A 22 294 22 HOH HOH . 
IA 6 HOH A 23 295 23 HOH HOH . 
IA 6 HOH A 24 296 24 HOH HOH . 
IA 6 HOH A 25 297 25 HOH HOH . 
IA 6 HOH A 26 298 26 HOH HOH . 
IA 6 HOH A 27 299 27 HOH HOH . 
IA 6 HOH A 28 300 28 HOH HOH . 
IA 6 HOH A 29 301 29 HOH HOH . 
IA 6 HOH A 30 302 30 HOH HOH . 
IA 6 HOH A 31 303 31 HOH HOH . 
IA 6 HOH A 32 304 32 HOH HOH . 
IA 6 HOH A 33 305 33 HOH HOH . 
IA 6 HOH A 34 306 34 HOH HOH . 
IA 6 HOH A 35 307 35 HOH HOH . 
IA 6 HOH A 36 308 36 HOH HOH . 
IA 6 HOH A 37 309 37 HOH HOH . 
IA 6 HOH A 38 310 38 HOH HOH . 
IA 6 HOH A 39 311 39 HOH HOH . 
IA 6 HOH A 40 312 40 HOH HOH . 
IA 6 HOH A 41 313 41 HOH HOH . 
IA 6 HOH A 42 314 42 HOH HOH . 
IA 6 HOH A 43 315 43 HOH HOH . 
IA 6 HOH A 44 316 44 HOH HOH . 
IA 6 HOH A 45 317 45 HOH HOH . 
IA 6 HOH A 46 318 46 HOH HOH . 
IA 6 HOH A 47 319 47 HOH HOH . 
IA 6 HOH A 48 320 48 HOH HOH . 
IA 6 HOH A 49 321 49 HOH HOH . 
IA 6 HOH A 50 322 50 HOH HOH . 
IA 6 HOH A 51 323 51 HOH HOH . 
IA 6 HOH A 52 324 52 HOH HOH . 
IA 6 HOH A 53 325 53 HOH HOH . 
IA 6 HOH A 54 326 54 HOH HOH . 
IA 6 HOH A 55 327 55 HOH HOH . 
IA 6 HOH A 56 328 56 HOH HOH . 
IA 6 HOH A 57 329 57 HOH HOH . 
IA 6 HOH A 58 330 58 HOH HOH . 
IA 6 HOH A 59 331 59 HOH HOH . 
IA 6 HOH A 60 332 60 HOH HOH . 
IA 6 HOH A 61 333 61 HOH HOH . 
IA 6 HOH A 62 334 62 HOH HOH . 
IA 6 HOH A 63 335 63 HOH HOH . 
IA 6 HOH A 64 336 64 HOH HOH . 
IA 6 HOH A 65 337 65 HOH HOH . 
IA 6 HOH A 66 338 66 HOH HOH . 
IA 6 HOH A 67 339 67 HOH HOH . 
IA 6 HOH A 68 340 68 HOH HOH . 
IA 6 HOH A 69 341 69 HOH HOH . 
IA 6 HOH A 70 342 70 HOH HOH . 
IA 6 HOH A 71 343 71 HOH HOH . 
IA 6 HOH A 72 344 72 HOH HOH . 
IA 6 HOH A 73 345 73 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 LFA . A . Y 4 8.214 20.858 11.938 0.55 55.34 ? C1 LFA 263 A 1 
HETATM 2 C C1 LFA . B . Y 4 7.82 21.304 11.67 0.45 54.66 ? C1 LFA 263 A 1 
HETATM 3 C C2 LFA . A . Y 4 6.901 20.203 11.504 0.55 55.19 ? C2 LFA 263 A 1 
HETATM 4 C C2 LFA . B . Y 4 6.852 20.195 11.254 0.45 54.17 ? C2 LFA 263 A 1 
HETATM 5 C C3 LFA . A . Y 4 6.696 18.831 12.166 0.55 55.54 ? C3 LFA 263 A 1 
HETATM 6 C C3 LFA . B . Y 4 6.722 19.158 12.37 0.45 54.17 ? C3 LFA 263 A 1 
HETATM 7 C C4 LFA . A . Y 4 5.361 18.199 11.759 0.55 56.1 ? C4 LFA 263 A 1 
HETATM 8 C C4 LFA . B . Y 4 5.783 18.014 11.982 0.45 54.11 ? C4 LFA 263 A 1 
HETATM 9 C C5 LFA . A . Y 4 4.834 17.267 12.853 0.55 57.22 ? C5 LFA 263 A 1 
HETATM 10 C C5 LFA . B . Y 4 5.753 16.982 13.11 0.45 54.3 ? C5 LFA 263 A 1 
HETATM 11 C C6 LFA . A . Y 4 5.015 15.79 12.481 0.55 58.48 ? C6 LFA 263 A 1 
HETATM 12 C C6 LFA . B . Y 4 4.977 15.723 12.723 0.45 55.56 ? C6 LFA 263 A 1 
HETATM 13 C C7 LFA . A . Y 4 5.397 14.941 13.7 0.55 59.18 ? C7 LFA 263 A 1 
HETATM 14 C C7 LFA . B . Y 4 5.166 14.645 13.792 0.45 55.8 ? C7 LFA 263 A 1 
HETATM 15 C C8 LFA . A . Y 4 4.546 13.667 13.781 0.55 59.26 ? C8 LFA 263 A 1 
HETATM 16 C C8 LFA . B . Y 4 4.465 13.343 13.4 0.45 55.22 ? C8 LFA 263 A 1 
HETATM 17 C C9 LFA . A . Y 4 5.271 12.576 14.583 0.55 59.71 ? C9 LFA 263 A 1 
HETATM 18 C C9 LFA . B . Y 4 4.776 12.222 14.394 0.45 55.29 ? C9 LFA 263 A 1 
HETATM 19 C C10 LFA . A . Y 4 4.369 11.993 15.675 0.55 58.72 ? C10 LFA 263 A 1 
HETATM 20 C C10 LFA . B . Y 4 4.259 12.552 15.796 0.45 54.42 ? C10 LFA 263 A 1 
#
_model_server_stats.io_time_ms              7 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    27 
_model_server_stats.query_time_ms           297 
_model_server_stats.encode_time_ms          10 
_model_server_stats.element_count           20 
#