data_3QDD # _model_server_result.job_id JTqs3GL79tlMS6Ok39rjFQ _model_server_result.datetime_utc '2024-11-22 17:28:59' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3qdd # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":999}' # _entry.id 3QDD # _exptl.entry_id 3QDD _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 318.762 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 6-chloro-9-[(4-methoxy-3,5-dimethylpyridin-2-yl)methyl]-9H-purin-2-amine _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3QDD _cell.length_a 66.625 _cell.length_b 91.064 _cell.length_c 99.205 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3QDD _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 2 2 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C14 H15 Cl N6 O' _chem_comp.formula_weight 318.762 _chem_comp.id 94M _chem_comp.mon_nstd_flag . _chem_comp.name 6-chloro-9-[(4-methoxy-3,5-dimethylpyridin-2-yl)methyl]-9H-purin-2-amine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms BIIB021 # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 94M doub 1 n y N1 C6 94M sing 2 n y C2 N2 94M sing 3 n n C2 N3 94M sing 4 n y N3 C4 94M doub 5 n y C4 C5 94M sing 6 n y C4 N9 94M sing 7 n y C5 C6 94M doub 8 n y C5 N7 94M sing 9 n y C6 CL6 94M sing 10 n n N7 C8 94M doub 11 n y C8 N9 94M sing 12 n y N9 CAH 94M sing 13 n n CAA OAM 94M sing 14 n n CAB CAN 94M sing 15 n n CAC CAP 94M sing 16 n n CAF NAI 94M doub 17 n y CAF CAN 94M sing 18 n y CAH CAR 94M sing 19 n n NAI CAR 94M sing 20 n y OAM CAS 94M sing 21 n n CAN CAS 94M doub 22 n y CAP CAR 94M doub 23 n y CAP CAS 94M sing 24 n y N2 HN2 94M sing 25 n n N2 HN2A 94M sing 26 n n C8 H8 94M sing 27 n n CAA HAA 94M sing 28 n n CAA HAAA 94M sing 29 n n CAA HAAB 94M sing 30 n n CAB HAB 94M sing 31 n n CAB HABA 94M sing 32 n n CAB HABB 94M sing 33 n n CAC HAC 94M sing 34 n n CAC HACA 94M sing 35 n n CAC HACB 94M sing 36 n n CAF HAF 94M sing 37 n n CAH HAH 94M sing 38 n n CAH HAHA 94M sing 39 n n # _atom_sites.entry_id 3QDD _atom_sites.fract_transf_matrix[1][1] 0.015009 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010981 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01008 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 94M A 1 999 999 94M 94M . C 3 HOH A 1 237 237 HOH HOH . C 3 HOH A 2 238 238 HOH HOH . C 3 HOH A 3 239 239 HOH HOH . C 3 HOH A 4 240 240 HOH HOH . C 3 HOH A 5 241 241 HOH HOH . C 3 HOH A 6 242 242 HOH HOH . C 3 HOH A 7 243 243 HOH HOH . C 3 HOH A 8 244 244 HOH HOH . C 3 HOH A 9 245 245 HOH HOH . C 3 HOH A 10 246 246 HOH HOH . C 3 HOH A 11 247 247 HOH HOH . C 3 HOH A 12 248 248 HOH HOH . C 3 HOH A 13 249 249 HOH HOH . C 3 HOH A 14 250 250 HOH HOH . C 3 HOH A 15 251 251 HOH HOH . C 3 HOH A 16 252 252 HOH HOH . C 3 HOH A 17 253 253 HOH HOH . C 3 HOH A 18 254 254 HOH HOH . C 3 HOH A 19 255 255 HOH HOH . C 3 HOH A 20 256 256 HOH HOH . C 3 HOH A 21 257 257 HOH HOH . C 3 HOH A 22 258 258 HOH HOH . C 3 HOH A 23 259 259 HOH HOH . C 3 HOH A 24 260 260 HOH HOH . C 3 HOH A 25 261 261 HOH HOH . C 3 HOH A 26 262 262 HOH HOH . C 3 HOH A 27 263 263 HOH HOH . C 3 HOH A 28 264 1 HOH HOH . C 3 HOH A 29 265 2 HOH HOH . C 3 HOH A 30 266 3 HOH HOH . C 3 HOH A 31 267 4 HOH HOH . C 3 HOH A 32 268 5 HOH HOH . C 3 HOH A 33 269 6 HOH HOH . C 3 HOH A 34 270 7 HOH HOH . C 3 HOH A 35 271 8 HOH HOH . C 3 HOH A 36 272 9 HOH HOH . C 3 HOH A 37 273 10 HOH HOH . C 3 HOH A 38 274 11 HOH HOH . C 3 HOH A 39 275 12 HOH HOH . C 3 HOH A 40 276 13 HOH HOH . C 3 HOH A 41 277 14 HOH HOH . C 3 HOH A 42 278 15 HOH HOH . C 3 HOH A 43 279 16 HOH HOH . C 3 HOH A 44 280 17 HOH HOH . C 3 HOH A 45 281 18 HOH HOH . C 3 HOH A 46 282 19 HOH HOH . C 3 HOH A 47 283 20 HOH HOH . C 3 HOH A 48 284 21 HOH HOH . C 3 HOH A 49 285 22 HOH HOH . C 3 HOH A 50 286 23 HOH HOH . C 3 HOH A 51 287 24 HOH HOH . C 3 HOH A 52 288 25 HOH HOH . C 3 HOH A 53 289 26 HOH HOH . C 3 HOH A 54 290 27 HOH HOH . C 3 HOH A 55 291 28 HOH HOH . C 3 HOH A 56 292 29 HOH HOH . C 3 HOH A 57 293 30 HOH HOH . C 3 HOH A 58 294 31 HOH HOH . C 3 HOH A 59 295 32 HOH HOH . C 3 HOH A 60 296 33 HOH HOH . C 3 HOH A 61 297 34 HOH HOH . C 3 HOH A 62 298 35 HOH HOH . C 3 HOH A 63 299 36 HOH HOH . C 3 HOH A 64 300 37 HOH HOH . C 3 HOH A 65 301 38 HOH HOH . C 3 HOH A 66 302 39 HOH HOH . C 3 HOH A 67 303 40 HOH HOH . C 3 HOH A 68 304 41 HOH HOH . C 3 HOH A 69 305 42 HOH HOH . C 3 HOH A 70 306 43 HOH HOH . C 3 HOH A 71 307 44 HOH HOH . C 3 HOH A 72 308 45 HOH HOH . C 3 HOH A 73 309 46 HOH HOH . C 3 HOH A 74 310 47 HOH HOH . C 3 HOH A 75 311 48 HOH HOH . C 3 HOH A 76 312 49 HOH HOH . C 3 HOH A 77 313 50 HOH HOH . C 3 HOH A 78 314 51 HOH HOH . C 3 HOH A 79 315 52 HOH HOH . C 3 HOH A 80 316 53 HOH HOH . C 3 HOH A 81 317 54 HOH HOH . C 3 HOH A 82 318 55 HOH HOH . C 3 HOH A 83 319 56 HOH HOH . C 3 HOH A 84 320 57 HOH HOH . C 3 HOH A 85 321 58 HOH HOH . C 3 HOH A 86 322 59 HOH HOH . C 3 HOH A 87 323 60 HOH HOH . C 3 HOH A 88 324 61 HOH HOH . C 3 HOH A 89 325 62 HOH HOH . C 3 HOH A 90 326 63 HOH HOH . C 3 HOH A 91 327 64 HOH HOH . C 3 HOH A 92 328 65 HOH HOH . C 3 HOH A 93 329 66 HOH HOH . C 3 HOH A 94 330 67 HOH HOH . C 3 HOH A 95 331 68 HOH HOH . C 3 HOH A 96 332 69 HOH HOH . C 3 HOH A 97 333 70 HOH HOH . C 3 HOH A 98 334 71 HOH HOH . C 3 HOH A 99 335 72 HOH HOH . C 3 HOH A 100 336 73 HOH HOH . C 3 HOH A 101 337 74 HOH HOH . C 3 HOH A 102 338 75 HOH HOH . C 3 HOH A 103 339 76 HOH HOH . C 3 HOH A 104 340 77 HOH HOH . C 3 HOH A 105 341 78 HOH HOH . C 3 HOH A 106 342 79 HOH HOH . C 3 HOH A 107 343 80 HOH HOH . C 3 HOH A 108 344 81 HOH HOH . C 3 HOH A 109 345 82 HOH HOH . C 3 HOH A 110 346 83 HOH HOH . C 3 HOH A 111 347 84 HOH HOH . C 3 HOH A 112 348 85 HOH HOH . C 3 HOH A 113 349 86 HOH HOH . C 3 HOH A 114 350 87 HOH HOH . C 3 HOH A 115 351 88 HOH HOH . C 3 HOH A 116 352 89 HOH HOH . C 3 HOH A 117 353 90 HOH HOH . C 3 HOH A 118 354 91 HOH HOH . C 3 HOH A 119 355 92 HOH HOH . C 3 HOH A 120 356 93 HOH HOH . C 3 HOH A 121 357 94 HOH HOH . C 3 HOH A 122 358 95 HOH HOH . C 3 HOH A 123 359 96 HOH HOH . C 3 HOH A 124 360 97 HOH HOH . C 3 HOH A 125 361 98 HOH HOH . C 3 HOH A 126 362 99 HOH HOH . C 3 HOH A 127 363 100 HOH HOH . C 3 HOH A 128 364 101 HOH HOH . C 3 HOH A 129 365 102 HOH HOH . C 3 HOH A 130 366 103 HOH HOH . C 3 HOH A 131 367 104 HOH HOH . C 3 HOH A 132 368 105 HOH HOH . C 3 HOH A 133 369 106 HOH HOH . C 3 HOH A 134 370 107 HOH HOH . C 3 HOH A 135 371 108 HOH HOH . C 3 HOH A 136 372 109 HOH HOH . C 3 HOH A 137 373 110 HOH HOH . C 3 HOH A 138 374 111 HOH HOH . C 3 HOH A 139 375 112 HOH HOH . C 3 HOH A 140 376 113 HOH HOH . C 3 HOH A 141 377 114 HOH HOH . C 3 HOH A 142 378 115 HOH HOH . C 3 HOH A 143 379 116 HOH HOH . C 3 HOH A 144 380 117 HOH HOH . C 3 HOH A 145 381 118 HOH HOH . C 3 HOH A 146 382 119 HOH HOH . C 3 HOH A 147 383 120 HOH HOH . C 3 HOH A 148 384 121 HOH HOH . C 3 HOH A 149 385 122 HOH HOH . C 3 HOH A 150 386 123 HOH HOH . C 3 HOH A 151 387 124 HOH HOH . C 3 HOH A 152 388 125 HOH HOH . C 3 HOH A 153 389 126 HOH HOH . C 3 HOH A 154 390 127 HOH HOH . C 3 HOH A 155 391 128 HOH HOH . C 3 HOH A 156 392 129 HOH HOH . C 3 HOH A 157 393 130 HOH HOH . C 3 HOH A 158 394 131 HOH HOH . C 3 HOH A 159 395 132 HOH HOH . C 3 HOH A 160 396 133 HOH HOH . C 3 HOH A 161 397 134 HOH HOH . C 3 HOH A 162 398 135 HOH HOH . C 3 HOH A 163 399 136 HOH HOH . C 3 HOH A 164 400 137 HOH HOH . C 3 HOH A 165 401 138 HOH HOH . C 3 HOH A 166 402 139 HOH HOH . C 3 HOH A 167 403 140 HOH HOH . C 3 HOH A 168 404 141 HOH HOH . C 3 HOH A 169 405 142 HOH HOH . C 3 HOH A 170 406 143 HOH HOH . C 3 HOH A 171 407 144 HOH HOH . C 3 HOH A 172 408 145 HOH HOH . C 3 HOH A 173 409 146 HOH HOH . C 3 HOH A 174 410 147 HOH HOH . C 3 HOH A 175 411 148 HOH HOH . C 3 HOH A 176 412 149 HOH HOH . C 3 HOH A 177 413 150 HOH HOH . C 3 HOH A 178 414 151 HOH HOH . C 3 HOH A 179 415 152 HOH HOH . C 3 HOH A 180 416 153 HOH HOH . C 3 HOH A 181 417 154 HOH HOH . C 3 HOH A 182 418 155 HOH HOH . C 3 HOH A 183 419 156 HOH HOH . C 3 HOH A 184 420 157 HOH HOH . C 3 HOH A 185 421 158 HOH HOH . C 3 HOH A 186 422 159 HOH HOH . C 3 HOH A 187 423 160 HOH HOH . C 3 HOH A 188 424 161 HOH HOH . C 3 HOH A 189 425 162 HOH HOH . C 3 HOH A 190 426 163 HOH HOH . C 3 HOH A 191 427 164 HOH HOH . C 3 HOH A 192 428 165 HOH HOH . C 3 HOH A 193 429 166 HOH HOH . C 3 HOH A 194 430 167 HOH HOH . C 3 HOH A 195 431 168 HOH HOH . C 3 HOH A 196 432 169 HOH HOH . C 3 HOH A 197 433 170 HOH HOH . C 3 HOH A 198 434 171 HOH HOH . C 3 HOH A 199 435 172 HOH HOH . C 3 HOH A 200 436 173 HOH HOH . C 3 HOH A 201 437 174 HOH HOH . C 3 HOH A 202 438 175 HOH HOH . C 3 HOH A 203 439 176 HOH HOH . C 3 HOH A 204 440 177 HOH HOH . C 3 HOH A 205 441 178 HOH HOH . C 3 HOH A 206 442 179 HOH HOH . C 3 HOH A 207 443 180 HOH HOH . C 3 HOH A 208 444 181 HOH HOH . C 3 HOH A 209 445 182 HOH HOH . C 3 HOH A 210 446 183 HOH HOH . C 3 HOH A 211 447 184 HOH HOH . C 3 HOH A 212 448 185 HOH HOH . C 3 HOH A 213 449 186 HOH HOH . C 3 HOH A 214 450 187 HOH HOH . C 3 HOH A 215 451 188 HOH HOH . C 3 HOH A 216 452 189 HOH HOH . C 3 HOH A 217 453 190 HOH HOH . C 3 HOH A 218 454 191 HOH HOH . C 3 HOH A 219 455 192 HOH HOH . C 3 HOH A 220 456 193 HOH HOH . C 3 HOH A 221 457 194 HOH HOH . C 3 HOH A 222 458 195 HOH HOH . C 3 HOH A 223 459 196 HOH HOH . C 3 HOH A 224 460 197 HOH HOH . C 3 HOH A 225 461 198 HOH HOH . C 3 HOH A 226 462 199 HOH HOH . C 3 HOH A 227 463 200 HOH HOH . C 3 HOH A 228 464 201 HOH HOH . C 3 HOH A 229 465 202 HOH HOH . C 3 HOH A 230 466 203 HOH HOH . C 3 HOH A 231 467 204 HOH HOH . C 3 HOH A 232 468 205 HOH HOH . C 3 HOH A 233 469 206 HOH HOH . C 3 HOH A 234 470 207 HOH HOH . C 3 HOH A 235 471 208 HOH HOH . C 3 HOH A 236 472 209 HOH HOH . C 3 HOH A 237 473 210 HOH HOH . C 3 HOH A 238 474 211 HOH HOH . C 3 HOH A 239 475 212 HOH HOH . C 3 HOH A 240 476 213 HOH HOH . C 3 HOH A 241 477 214 HOH HOH . C 3 HOH A 242 478 215 HOH HOH . C 3 HOH A 243 479 216 HOH HOH . C 3 HOH A 244 480 217 HOH HOH . C 3 HOH A 245 481 218 HOH HOH . C 3 HOH A 246 482 219 HOH HOH . C 3 HOH A 247 483 220 HOH HOH . C 3 HOH A 248 484 221 HOH HOH . C 3 HOH A 249 485 222 HOH HOH . C 3 HOH A 250 486 223 HOH HOH . C 3 HOH A 251 487 224 HOH HOH . C 3 HOH A 252 488 225 HOH HOH . C 3 HOH A 253 489 226 HOH HOH . C 3 HOH A 254 490 227 HOH HOH . C 3 HOH A 255 491 228 HOH HOH . C 3 HOH A 256 492 229 HOH HOH . C 3 HOH A 257 493 230 HOH HOH . C 3 HOH A 258 494 231 HOH HOH . C 3 HOH A 259 495 232 HOH HOH . C 3 HOH A 260 496 233 HOH HOH . C 3 HOH A 261 497 234 HOH HOH . C 3 HOH A 262 498 235 HOH HOH . C 3 HOH A 263 499 236 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 94M . . . B 2 1.594 34.875 25.758 1 18.17 ? N1 94M 999 A 1 HETATM 2 C C2 94M . . . B 2 1.323 34.299 24.601 1 17.68 ? C2 94M 999 A 1 HETATM 3 N N2 94M . . . B 2 2.343 33.8 23.949 1 18.81 ? N2 94M 999 A 1 HETATM 4 N N3 94M . . . B 2 0.096 34.22 24.079 1 17.25 ? N3 94M 999 A 1 HETATM 5 C C4 94M . . . B 2 -0.948 34.742 24.759 1 17.85 ? C4 94M 999 A 1 HETATM 6 C C5 94M . . . B 2 -0.721 35.339 26.019 1 16.79 ? C5 94M 999 A 1 HETATM 7 C C6 94M . . . B 2 0.578 35.389 26.47 1 18.11 ? C6 94M 999 A 1 HETATM 8 CL CL6 94M . . . B 2 0.977 36.135 28.008 0.25 10.42 ? CL6 94M 999 A 1 HETATM 9 N N7 94M . . . B 2 -1.924 35.812 26.448 1 19.13 ? N7 94M 999 A 1 HETATM 10 C C8 94M . . . B 2 -2.862 35.442 25.574 0.5 14.11 ? C8 94M 999 A 1 HETATM 11 N N9 94M . . . B 2 -2.257 34.821 24.549 1 18.02 ? N9 94M 999 A 1 HETATM 12 C CAA 94M . . . B 2 -4.544 29.495 26.388 1 24.39 ? CAA 94M 999 A 1 HETATM 13 C CAB 94M . . . B 2 -7.16 30.551 24.786 1 22.37 ? CAB 94M 999 A 1 HETATM 14 C CAC 94M . . . B 2 -2.259 31.386 24.38 1 19.14 ? CAC 94M 999 A 1 HETATM 15 C CAF 94M . . . B 2 -6.267 32.775 23.983 1 21.29 ? CAF 94M 999 A 1 HETATM 16 C CAH 94M . . . B 2 -2.948 34.274 23.367 1 17.23 ? CAH 94M 999 A 1 HETATM 17 N NAI 94M . . . B 2 -5.263 33.626 23.672 1 18.26 ? NAI 94M 999 A 1 HETATM 18 O OAM 94M . . . B 2 -4.445 29.789 25.002 1 22.1 ? OAM 94M 999 A 1 HETATM 19 C CAN 94M . . . B 2 -6.019 31.493 24.468 1 18.79 ? CAN 94M 999 A 1 HETATM 20 C CAP 94M . . . B 2 -3.686 31.925 24.239 1 17.6 ? CAP 94M 999 A 1 HETATM 21 C CAR 94M . . . B 2 -3.987 33.243 23.785 1 18.62 ? CAR 94M 999 A 1 HETATM 22 C CAS 94M . . . B 2 -4.713 31.054 24.546 1 19.61 ? CAS 94M 999 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 18 _model_server_stats.query_time_ms 281 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 22 #