data_3QDF
#
_model_server_result.job_id            KLgngGl-rp3jsj192XPMTQ 
_model_server_result.datetime_utc      '2024-11-23 12:13:17' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3qdf 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":268}' 
#
_entry.id    3QDF 
#
_exptl.entry_id    3QDF 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              62.068 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-ETHANEDIOL 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            3QDF 
_cell.length_a            47.7 
_cell.length_b            104.93 
_cell.length_c            136.97 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3QDF 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        24 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'I 21 21 21' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 D N N 
? 3 E N N 
? 3 F N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OE2 GLU 121 A GLU 117 1_555 B ZN ZN . A ZN 266 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.275 ? 
metalc ? metalc2 A OE2 GLU 123 A GLU 119 1_555 B ZN ZN . A ZN 266 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.015 ? 
metalc ? metalc3 A OD2 ASP 152 A ASP 148 1_555 B ZN ZN . A ZN 266 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.119 ? 
metalc ? metalc4 A OE1 GLU 191 A GLU 187 1_555 C ZN ZN . A ZN 267 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.141 ? 
metalc ? metalc5 A NE2 HIS 203 A HIS 199 1_555 C ZN ZN . A ZN 267 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.082 ? 
metalc ? metalc6 B ZN ZN . A ZN 266 1_555 D O1 EDO . A EDO 268 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.126 ? 
metalc ? metalc7 B ZN ZN . A ZN 266 1_555 G O HOH . A HOH 412 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.275 ? 
#
_chem_comp.formula           'C2 H6 O2' 
_chem_comp.formula_weight    62.068 
_chem_comp.id                EDO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,2-ETHANEDIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'ETHYLENE GLYCOL' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 EDO sing 83 n n 
C1 C2 EDO sing 84 n n 
C1 H11 EDO sing 85 n n 
C1 H12 EDO sing 86 n n 
O1 HO1 EDO sing 87 n n 
C2 O2 EDO sing 88 n n 
C2 H21 EDO sing 89 n n 
C2 H22 EDO sing 90 n n 
O2 HO2 EDO sing 91 n n 
#
_atom_sites.entry_id                     3QDF 
_atom_sites.fract_transf_matrix[1][1]    0.020964 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.00953 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007301 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 ZN A 1 266 266 ZN ZN . 
C 2 ZN A 1 267 267 ZN ZN . 
D 3 EDO A 1 268 268 EDO EDO . 
E 3 EDO A 1 269 269 EDO EDO . 
F 3 EDO A 1 270 270 EDO EDO . 
G 4 HOH A 1 265 1 HOH HOH . 
G 4 HOH A 2 271 2 HOH HOH . 
G 4 HOH A 3 272 3 HOH HOH . 
G 4 HOH A 4 273 4 HOH HOH . 
G 4 HOH A 5 274 5 HOH HOH . 
G 4 HOH A 6 275 6 HOH HOH . 
G 4 HOH A 7 276 7 HOH HOH . 
G 4 HOH A 8 277 8 HOH HOH . 
G 4 HOH A 9 278 9 HOH HOH . 
G 4 HOH A 10 279 10 HOH HOH . 
G 4 HOH A 11 280 11 HOH HOH . 
G 4 HOH A 12 281 12 HOH HOH . 
G 4 HOH A 13 282 13 HOH HOH . 
G 4 HOH A 14 283 14 HOH HOH . 
G 4 HOH A 15 284 15 HOH HOH . 
G 4 HOH A 16 285 16 HOH HOH . 
G 4 HOH A 17 286 17 HOH HOH . 
G 4 HOH A 18 287 18 HOH HOH . 
G 4 HOH A 19 288 19 HOH HOH . 
G 4 HOH A 20 289 20 HOH HOH . 
G 4 HOH A 21 290 21 HOH HOH . 
G 4 HOH A 22 291 22 HOH HOH . 
G 4 HOH A 23 292 23 HOH HOH . 
G 4 HOH A 24 293 24 HOH HOH . 
G 4 HOH A 25 294 25 HOH HOH . 
G 4 HOH A 26 295 26 HOH HOH . 
G 4 HOH A 27 296 27 HOH HOH . 
G 4 HOH A 28 297 28 HOH HOH . 
G 4 HOH A 29 298 29 HOH HOH . 
G 4 HOH A 30 299 30 HOH HOH . 
G 4 HOH A 31 300 31 HOH HOH . 
G 4 HOH A 32 301 32 HOH HOH . 
G 4 HOH A 33 302 33 HOH HOH . 
G 4 HOH A 34 303 34 HOH HOH . 
G 4 HOH A 35 304 35 HOH HOH . 
G 4 HOH A 36 305 36 HOH HOH . 
G 4 HOH A 37 306 37 HOH HOH . 
G 4 HOH A 38 307 38 HOH HOH . 
G 4 HOH A 39 308 39 HOH HOH . 
G 4 HOH A 40 309 40 HOH HOH . 
G 4 HOH A 41 310 41 HOH HOH . 
G 4 HOH A 42 311 42 HOH HOH . 
G 4 HOH A 43 312 43 HOH HOH . 
G 4 HOH A 44 313 44 HOH HOH . 
G 4 HOH A 45 314 45 HOH HOH . 
G 4 HOH A 46 315 46 HOH HOH . 
G 4 HOH A 47 316 47 HOH HOH . 
G 4 HOH A 48 317 48 HOH HOH . 
G 4 HOH A 49 318 49 HOH HOH . 
G 4 HOH A 50 319 50 HOH HOH . 
G 4 HOH A 51 320 51 HOH HOH . 
G 4 HOH A 52 321 52 HOH HOH . 
G 4 HOH A 53 322 53 HOH HOH . 
G 4 HOH A 54 323 54 HOH HOH . 
G 4 HOH A 55 324 55 HOH HOH . 
G 4 HOH A 56 325 56 HOH HOH . 
G 4 HOH A 57 326 57 HOH HOH . 
G 4 HOH A 58 327 58 HOH HOH . 
G 4 HOH A 59 328 59 HOH HOH . 
G 4 HOH A 60 329 60 HOH HOH . 
G 4 HOH A 61 330 61 HOH HOH . 
G 4 HOH A 62 331 62 HOH HOH . 
G 4 HOH A 63 332 63 HOH HOH . 
G 4 HOH A 64 333 64 HOH HOH . 
G 4 HOH A 65 334 65 HOH HOH . 
G 4 HOH A 66 335 66 HOH HOH . 
G 4 HOH A 67 336 67 HOH HOH . 
G 4 HOH A 68 337 68 HOH HOH . 
G 4 HOH A 69 338 69 HOH HOH . 
G 4 HOH A 70 339 70 HOH HOH . 
G 4 HOH A 71 340 71 HOH HOH . 
G 4 HOH A 72 341 72 HOH HOH . 
G 4 HOH A 73 342 73 HOH HOH . 
G 4 HOH A 74 343 74 HOH HOH . 
G 4 HOH A 75 344 75 HOH HOH . 
G 4 HOH A 76 345 76 HOH HOH . 
G 4 HOH A 77 346 77 HOH HOH . 
G 4 HOH A 78 347 78 HOH HOH . 
G 4 HOH A 79 348 79 HOH HOH . 
G 4 HOH A 80 349 80 HOH HOH . 
G 4 HOH A 81 350 81 HOH HOH . 
G 4 HOH A 82 351 82 HOH HOH . 
G 4 HOH A 83 352 83 HOH HOH . 
G 4 HOH A 84 353 84 HOH HOH . 
G 4 HOH A 85 354 85 HOH HOH . 
G 4 HOH A 86 355 86 HOH HOH . 
G 4 HOH A 87 356 87 HOH HOH . 
G 4 HOH A 88 357 88 HOH HOH . 
G 4 HOH A 89 358 89 HOH HOH . 
G 4 HOH A 90 359 90 HOH HOH . 
G 4 HOH A 91 360 91 HOH HOH . 
G 4 HOH A 92 361 92 HOH HOH . 
G 4 HOH A 93 362 93 HOH HOH . 
G 4 HOH A 94 363 94 HOH HOH . 
G 4 HOH A 95 364 95 HOH HOH . 
G 4 HOH A 96 365 96 HOH HOH . 
G 4 HOH A 97 366 97 HOH HOH . 
G 4 HOH A 98 367 98 HOH HOH . 
G 4 HOH A 99 368 99 HOH HOH . 
G 4 HOH A 100 369 100 HOH HOH . 
G 4 HOH A 101 370 101 HOH HOH . 
G 4 HOH A 102 371 102 HOH HOH . 
G 4 HOH A 103 372 103 HOH HOH . 
G 4 HOH A 104 373 104 HOH HOH . 
G 4 HOH A 105 374 105 HOH HOH . 
G 4 HOH A 106 375 106 HOH HOH . 
G 4 HOH A 107 376 107 HOH HOH . 
G 4 HOH A 108 377 108 HOH HOH . 
G 4 HOH A 109 378 109 HOH HOH . 
G 4 HOH A 110 379 110 HOH HOH . 
G 4 HOH A 111 380 111 HOH HOH . 
G 4 HOH A 112 381 112 HOH HOH . 
G 4 HOH A 113 382 113 HOH HOH . 
G 4 HOH A 114 383 114 HOH HOH . 
G 4 HOH A 115 384 115 HOH HOH . 
G 4 HOH A 116 385 116 HOH HOH . 
G 4 HOH A 117 386 117 HOH HOH . 
G 4 HOH A 118 387 118 HOH HOH . 
G 4 HOH A 119 388 119 HOH HOH . 
G 4 HOH A 120 389 120 HOH HOH . 
G 4 HOH A 121 390 121 HOH HOH . 
G 4 HOH A 122 391 122 HOH HOH . 
G 4 HOH A 123 392 123 HOH HOH . 
G 4 HOH A 124 393 124 HOH HOH . 
G 4 HOH A 125 394 125 HOH HOH . 
G 4 HOH A 126 395 126 HOH HOH . 
G 4 HOH A 127 396 127 HOH HOH . 
G 4 HOH A 128 397 128 HOH HOH . 
G 4 HOH A 129 398 129 HOH HOH . 
G 4 HOH A 130 399 130 HOH HOH . 
G 4 HOH A 131 400 131 HOH HOH . 
G 4 HOH A 132 401 132 HOH HOH . 
G 4 HOH A 133 402 133 HOH HOH . 
G 4 HOH A 134 403 134 HOH HOH . 
G 4 HOH A 135 404 135 HOH HOH . 
G 4 HOH A 136 405 136 HOH HOH . 
G 4 HOH A 137 406 137 HOH HOH . 
G 4 HOH A 138 407 138 HOH HOH . 
G 4 HOH A 139 408 139 HOH HOH . 
G 4 HOH A 140 409 140 HOH HOH . 
G 4 HOH A 141 410 141 HOH HOH . 
G 4 HOH A 142 411 142 HOH HOH . 
G 4 HOH A 143 412 143 HOH HOH . 
G 4 HOH A 144 413 144 HOH HOH . 
G 4 HOH A 145 414 145 HOH HOH . 
G 4 HOH A 146 415 146 HOH HOH . 
G 4 HOH A 147 416 147 HOH HOH . 
G 4 HOH A 148 417 148 HOH HOH . 
G 4 HOH A 149 418 149 HOH HOH . 
G 4 HOH A 150 419 150 HOH HOH . 
G 4 HOH A 151 420 151 HOH HOH . 
G 4 HOH A 152 421 152 HOH HOH . 
G 4 HOH A 153 422 153 HOH HOH . 
G 4 HOH A 154 423 154 HOH HOH . 
G 4 HOH A 155 424 155 HOH HOH . 
G 4 HOH A 156 425 156 HOH HOH . 
G 4 HOH A 157 426 157 HOH HOH . 
G 4 HOH A 158 427 158 HOH HOH . 
G 4 HOH A 159 428 159 HOH HOH . 
G 4 HOH A 160 429 160 HOH HOH . 
G 4 HOH A 161 430 161 HOH HOH . 
G 4 HOH A 162 431 162 HOH HOH . 
G 4 HOH A 163 432 163 HOH HOH . 
G 4 HOH A 164 433 164 HOH HOH . 
G 4 HOH A 165 434 165 HOH HOH . 
G 4 HOH A 166 435 166 HOH HOH . 
G 4 HOH A 167 436 167 HOH HOH . 
G 4 HOH A 168 437 168 HOH HOH . 
G 4 HOH A 169 438 169 HOH HOH . 
G 4 HOH A 170 439 170 HOH HOH . 
G 4 HOH A 171 440 171 HOH HOH . 
G 4 HOH A 172 441 172 HOH HOH . 
G 4 HOH A 173 442 173 HOH HOH . 
G 4 HOH A 174 443 174 HOH HOH . 
G 4 HOH A 175 444 175 HOH HOH . 
G 4 HOH A 176 445 176 HOH HOH . 
G 4 HOH A 177 446 177 HOH HOH . 
G 4 HOH A 178 447 178 HOH HOH . 
G 4 HOH A 179 448 179 HOH HOH . 
G 4 HOH A 180 449 180 HOH HOH . 
G 4 HOH A 181 450 181 HOH HOH . 
G 4 HOH A 182 451 182 HOH HOH . 
G 4 HOH A 183 452 183 HOH HOH . 
G 4 HOH A 184 453 184 HOH HOH . 
G 4 HOH A 185 454 185 HOH HOH . 
G 4 HOH A 186 455 186 HOH HOH . 
G 4 HOH A 187 456 187 HOH HOH . 
G 4 HOH A 188 457 188 HOH HOH . 
G 4 HOH A 189 458 189 HOH HOH . 
G 4 HOH A 190 459 190 HOH HOH . 
G 4 HOH A 191 460 191 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 EDO . . . D 3 9.193 -11.852 58.211 1 38.84 ? C1 EDO 268 A 1 
HETATM 2 O O1 EDO . . . D 3 8.304 -11.301 57.215 1 37.05 ? O1 EDO 268 A 1 
HETATM 3 C C2 EDO . . . D 3 9.54 -13.328 57.977 1 41.59 ? C2 EDO 268 A 1 
HETATM 4 O O2 EDO . . . D 3 10.946 -13.557 58.223 1 40.85 ? O2 EDO 268 A 1 
#
_model_server_stats.io_time_ms              71 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    2 
_model_server_stats.query_time_ms           309 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           4 
#