data_3QDW
#
_model_server_result.job_id            Y1_Smi9PrqWx374ErPy5OQ 
_model_server_result.datetime_utc      '2024-10-19 06:29:31' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3qdw 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":144}' 
#
_entry.id    3QDW 
#
_exptl.entry_id    3QDW 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              221.208 
_entity.id                          2 
_entity.src_method                  man 
_entity.type                        non-polymer 
_entity.pdbx_description            2-acetamido-2-deoxy-alpha-D-galactopyranose 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            3QDW 
_cell.length_a            123.818 
_cell.length_b            123.818 
_cell.length_c            104.322 
_cell.Z_PDB               24 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3QDW 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        178 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 61 2 2' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA tetrameric 4 author_and_software_defined_assembly 1 
PISA dimeric 2 software_defined_assembly 2 
PISA dimeric 2 software_defined_assembly 3 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,C,D,E,F,G,H 1 1,2 
A,C,D,G 2 1,2 
B,E,F,H 3 1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 10_664 -y+1,-x+1,-z-1/6 0.5 -0.866025 0 -0.866025 -0.5 0 0 0 -1 61.909 107.229533 -17.387 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 E N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A C ACE 1 A ACE 0 1_555 A N THR 2 A THR 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? 
covale ? covale2 B C ACE 1 B ACE 0 1_555 B N THR 2 B THR 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? 
#
_chem_comp.formula           'C8 H15 N O6' 
_chem_comp.formula_weight    221.208 
_chem_comp.id                A2G 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              2-acetamido-2-deoxy-alpha-D-galactopyranose 
_chem_comp.type              'd-saccharide, alpha linking' 
_chem_comp.pdbx_synonyms     N-acetyl-alpha-D-galactosamine;2-acetamido-2-deoxy-alpha-D-galactose;2-acetamido-2-deoxy-D-galactose;2-acetamido-2-deoxy-galactose;N-ACETYL-2-DEOXY-2-AMINO-GALACTOSE 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O5 C5 A2G sing 1 n n 
C1 O5 A2G sing 2 n n 
C1 C2 A2G sing 3 n n 
C1 H1 A2G sing 4 n n 
O1 C1 A2G sing 5 n n 
O1 HO1 A2G sing 6 n n 
C2 C3 A2G sing 7 n n 
C2 H2 A2G sing 8 n n 
N2 C2 A2G sing 9 n n 
N2 HN2 A2G sing 10 n n 
C3 C4 A2G sing 11 n n 
C3 O3 A2G sing 12 n n 
C3 H3 A2G sing 13 n n 
O3 HO3 A2G sing 14 n n 
C4 O4 A2G sing 15 n n 
C4 H4 A2G sing 16 n n 
O4 HO4 A2G sing 17 n n 
C5 C4 A2G sing 18 n n 
C5 C6 A2G sing 19 n n 
C5 H5 A2G sing 20 n n 
C6 O6 A2G sing 21 n n 
C6 H61 A2G sing 22 n n 
C7 N2 A2G sing 23 n n 
O7 C7 A2G doub 24 n n 
C8 C7 A2G sing 25 n n 
C8 H81 A2G sing 26 n n 
C8 H82 A2G sing 27 n n 
C8 H83 A2G sing 28 n n 
C6 H62 A2G sing 29 n n 
O6 HO6 A2G sing 30 n n 
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.identifier
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
A2G DGalpNAca 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 
A2G N-acetyl-a-D-galactopyranosamine 'COMMON NAME' GMML 1 
A2G a-D-GalpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 
A2G GalNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 
#
_atom_sites.entry_id                     3QDW 
_atom_sites.fract_transf_matrix[1][1]    0.008076 
_atom_sites.fract_transf_matrix[1][2]    0.004663 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009326 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.009586 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 A2G A 1 144 144 A2G NGA . 
D 3 NDG A 1 145 145 NDG NAG . 
E 2 A2G B 1 144 144 A2G NGA . 
F 3 NDG B 1 145 145 NDG NAG . 
G 4 HOH A 1 143 5 HOH HOH . 
G 4 HOH A 2 146 7 HOH HOH . 
G 4 HOH A 3 147 9 HOH HOH . 
G 4 HOH A 4 148 12 HOH HOH . 
G 4 HOH A 5 149 20 HOH HOH . 
G 4 HOH A 6 150 25 HOH HOH . 
G 4 HOH A 7 151 26 HOH HOH . 
G 4 HOH A 8 152 28 HOH HOH . 
G 4 HOH A 9 153 33 HOH HOH . 
G 4 HOH A 10 154 34 HOH HOH . 
G 4 HOH A 11 155 35 HOH HOH . 
G 4 HOH A 12 156 36 HOH HOH . 
G 4 HOH A 13 157 38 HOH HOH . 
G 4 HOH A 14 158 39 HOH HOH . 
G 4 HOH A 15 159 43 HOH HOH . 
G 4 HOH A 16 160 44 HOH HOH . 
G 4 HOH A 17 161 46 HOH HOH . 
G 4 HOH A 18 162 48 HOH HOH . 
G 4 HOH A 19 163 50 HOH HOH . 
G 4 HOH A 20 164 53 HOH HOH . 
G 4 HOH A 21 165 54 HOH HOH . 
G 4 HOH A 22 166 55 HOH HOH . 
G 4 HOH A 23 167 56 HOH HOH . 
G 4 HOH A 24 168 57 HOH HOH . 
G 4 HOH A 25 169 61 HOH HOH . 
G 4 HOH A 26 170 65 HOH HOH . 
G 4 HOH A 27 171 66 HOH HOH . 
G 4 HOH A 28 172 70 HOH HOH . 
G 4 HOH A 29 173 78 HOH HOH . 
G 4 HOH A 30 174 81 HOH HOH . 
G 4 HOH A 31 175 82 HOH HOH . 
G 4 HOH A 32 176 85 HOH HOH . 
G 4 HOH A 33 177 86 HOH HOH . 
G 4 HOH A 34 178 87 HOH HOH . 
G 4 HOH A 35 179 89 HOH HOH . 
G 4 HOH A 36 180 90 HOH HOH . 
G 4 HOH A 37 181 91 HOH HOH . 
G 4 HOH A 38 182 92 HOH HOH . 
G 4 HOH A 39 183 94 HOH HOH . 
G 4 HOH A 40 184 98 HOH HOH . 
G 4 HOH A 41 185 100 HOH HOH . 
G 4 HOH A 42 186 103 HOH HOH . 
G 4 HOH A 43 187 106 HOH HOH . 
G 4 HOH A 44 188 107 HOH HOH . 
G 4 HOH A 45 189 109 HOH HOH . 
G 4 HOH A 46 190 112 HOH HOH . 
G 4 HOH A 47 191 114 HOH HOH . 
G 4 HOH A 48 192 126 HOH HOH . 
G 4 HOH A 49 193 127 HOH HOH . 
G 4 HOH A 50 194 129 HOH HOH . 
H 4 HOH B 1 143 1 HOH HOH . 
H 4 HOH B 2 146 2 HOH HOH . 
H 4 HOH B 3 147 3 HOH HOH . 
H 4 HOH B 4 148 4 HOH HOH . 
H 4 HOH B 5 149 6 HOH HOH . 
H 4 HOH B 6 150 8 HOH HOH . 
H 4 HOH B 7 151 10 HOH HOH . 
H 4 HOH B 8 152 11 HOH HOH . 
H 4 HOH B 9 153 13 HOH HOH . 
H 4 HOH B 10 154 14 HOH HOH . 
H 4 HOH B 11 155 15 HOH HOH . 
H 4 HOH B 12 156 16 HOH HOH . 
H 4 HOH B 13 157 17 HOH HOH . 
H 4 HOH B 14 158 18 HOH HOH . 
H 4 HOH B 15 159 19 HOH HOH . 
H 4 HOH B 16 160 21 HOH HOH . 
H 4 HOH B 17 161 22 HOH HOH . 
H 4 HOH B 18 162 23 HOH HOH . 
H 4 HOH B 19 163 24 HOH HOH . 
H 4 HOH B 20 164 27 HOH HOH . 
H 4 HOH B 21 165 29 HOH HOH . 
H 4 HOH B 22 166 30 HOH HOH . 
H 4 HOH B 23 167 31 HOH HOH . 
H 4 HOH B 24 168 32 HOH HOH . 
H 4 HOH B 25 169 37 HOH HOH . 
H 4 HOH B 26 170 40 HOH HOH . 
H 4 HOH B 27 171 41 HOH HOH . 
H 4 HOH B 28 172 42 HOH HOH . 
H 4 HOH B 29 173 45 HOH HOH . 
H 4 HOH B 30 174 47 HOH HOH . 
H 4 HOH B 31 175 49 HOH HOH . 
H 4 HOH B 32 176 51 HOH HOH . 
H 4 HOH B 33 177 52 HOH HOH . 
H 4 HOH B 34 178 58 HOH HOH . 
H 4 HOH B 35 179 59 HOH HOH . 
H 4 HOH B 36 180 60 HOH HOH . 
H 4 HOH B 37 181 62 HOH HOH . 
H 4 HOH B 38 182 63 HOH HOH . 
H 4 HOH B 39 183 64 HOH HOH . 
H 4 HOH B 40 184 67 HOH HOH . 
H 4 HOH B 41 185 68 HOH HOH . 
H 4 HOH B 42 186 69 HOH HOH . 
H 4 HOH B 43 187 71 HOH HOH . 
H 4 HOH B 44 188 72 HOH HOH . 
H 4 HOH B 45 189 73 HOH HOH . 
H 4 HOH B 46 190 74 HOH HOH . 
H 4 HOH B 47 191 75 HOH HOH . 
H 4 HOH B 48 192 76 HOH HOH . 
H 4 HOH B 49 193 77 HOH HOH . 
H 4 HOH B 50 194 79 HOH HOH . 
H 4 HOH B 51 195 80 HOH HOH . 
H 4 HOH B 52 196 83 HOH HOH . 
H 4 HOH B 53 197 84 HOH HOH . 
H 4 HOH B 54 198 88 HOH HOH . 
H 4 HOH B 55 199 93 HOH HOH . 
H 4 HOH B 56 200 95 HOH HOH . 
H 4 HOH B 57 201 96 HOH HOH . 
H 4 HOH B 58 202 97 HOH HOH . 
H 4 HOH B 59 203 99 HOH HOH . 
H 4 HOH B 60 204 101 HOH HOH . 
H 4 HOH B 61 205 102 HOH HOH . 
H 4 HOH B 62 206 104 HOH HOH . 
H 4 HOH B 63 207 105 HOH HOH . 
H 4 HOH B 64 208 108 HOH HOH . 
H 4 HOH B 65 209 110 HOH HOH . 
H 4 HOH B 66 210 111 HOH HOH . 
H 4 HOH B 67 211 113 HOH HOH . 
H 4 HOH B 68 212 115 HOH HOH . 
H 4 HOH B 69 213 116 HOH HOH . 
H 4 HOH B 70 214 117 HOH HOH . 
H 4 HOH B 71 215 118 HOH HOH . 
H 4 HOH B 72 216 119 HOH HOH . 
H 4 HOH B 73 217 120 HOH HOH . 
H 4 HOH B 74 218 121 HOH HOH . 
H 4 HOH B 75 219 122 HOH HOH . 
H 4 HOH B 76 220 123 HOH HOH . 
H 4 HOH B 77 221 124 HOH HOH . 
H 4 HOH B 78 222 125 HOH HOH . 
H 4 HOH B 79 223 128 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O O5 A2G . . . E 2 -5.193 55.077 -8.01 1 24.94 ? O5 A2G 144 B 1 
HETATM 2 C C1 A2G . . . E 2 -5.302 53.817 -7.286 1 34.6 ? C1 A2G 144 B 1 
HETATM 3 O O1 A2G . . . E 2 -6.611 53.693 -6.743 1 37.49 ? O1 A2G 144 B 1 
HETATM 4 C C2 A2G . . . E 2 -4.254 53.637 -6.173 1 27.64 ? C2 A2G 144 B 1 
HETATM 5 N N2 A2G . . . E 2 -4.57 52.478 -5.313 1 28.29 ? N2 A2G 144 B 1 
HETATM 6 C C3 A2G . . . E 2 -4.114 54.898 -5.318 1 26.52 ? C3 A2G 144 B 1 
HETATM 7 O O3 A2G . . . E 2 -2.957 54.786 -4.485 1 26.5 ? O3 A2G 144 B 1 
HETATM 8 C C4 A2G . . . E 2 -3.961 56.108 -6.23 1 30.69 ? C4 A2G 144 B 1 
HETATM 9 O O4 A2G . . . E 2 -2.804 55.931 -7.064 1 22.9 ? O4 A2G 144 B 1 
HETATM 10 C C5 A2G . . . E 2 -5.18 56.215 -7.132 1 34.97 ? C5 A2G 144 B 1 
HETATM 11 C C6 A2G . . . E 2 -5.02 57.5 -7.942 1 32.22 ? C6 A2G 144 B 1 
HETATM 12 O O6 A2G . . . E 2 -6.009 57.542 -8.967 1 46.62 ? O6 A2G 144 B 1 
HETATM 13 C C7 A2G . . . E 2 -3.944 51.309 -5.459 1 25.48 ? C7 A2G 144 B 1 
HETATM 14 O O7 A2G . . . E 2 -3.094 51.091 -6.325 1 21.74 ? O7 A2G 144 B 1 
HETATM 15 C C8 A2G . . . E 2 -4.333 50.218 -4.452 1 25.43 ? C8 A2G 144 B 1 
#
_model_server_stats.io_time_ms              68 
_model_server_stats.parse_time_ms           22 
_model_server_stats.create_model_time_ms    22 
_model_server_stats.query_time_ms           345 
_model_server_stats.encode_time_ms          10 
_model_server_stats.element_count           15 
#