data_3QEM # _model_server_result.job_id tGihnzjsU4lfLIkzehS3WQ _model_server_result.datetime_utc '2024-11-05 11:03:49' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3qem # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":396}' # _entry.id 3QEM # _exptl.entry_id 3QEM _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 339.471 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 4-[(1R,2S)-3-(4-benzylpiperidin-1-yl)-1-hydroxy-2-methylpropyl]phenol _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 116.32 _cell.angle_gamma 90 _cell.entry_id 3QEM _cell.length_a 268.029 _cell.length_b 61.255 _cell.length_c 144.423 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3QEM _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,E,F,G,H,I,J 1 1 C,D,K,L,M,N 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 6 J N N ? 6 N N N # _pdbx_entity_branch.entity_id 3 _pdbx_entity_branch.type oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 3 2 1 NAG NAG C1 O1 . O4 HO4 . sing 2 ? 3 3 2 BMA NAG C1 O1 . O4 HO4 . sing 3 ? 3 4 3 MAN BMA C1 O1 . O3 HO3 . sing 4 ? 3 5 3 MAN BMA C1 O1 . O6 HO6 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 3 n E NAG 1 E 1 NAG E 1 NAG 3 n E NAG 2 E 2 NAG E 2 NAG 3 n E BMA 3 E 3 BMA E 3 BMA 3 n E MAN 4 E 4 MAN E 5 MAN 3 n E MAN 5 E 5 MAN E 4 MAN # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 57 A CYS 79 1_555 A SG CYS 307 A CYS 329 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.062 ? disulf ? disulf2 B SG CYS 56 B CYS 86 1_555 B SG CYS 291 B CYS 321 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? disulf ? disulf3 C SG CYS 57 C CYS 79 1_555 C SG CYS 307 C CYS 329 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? disulf ? disulf4 D SG CYS 56 D CYS 86 1_555 D SG CYS 291 D CYS 321 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? covale ? covale1 A ND2 ASN 275 A ASN 297 1_555 F C1 NAG . A NAG 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.446 ? covale ? covale2 A ND2 ASN 367 A ASN 389 1_555 E C1 NAG . E NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.437 ? covale ? covale3 H C1 NAG . B NAG 1 1_555 B ND2 ASN 44 B ASN 74 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? covale ? covale4 B ND2 ASN 311 B ASN 341 1_555 I C1 NAG . B NAG 395 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? covale ? covale5 K C1 NAG . C NAG 1 1_555 C ND2 ASN 275 C ASN 297 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? covale ? covale6 M C1 NAG . D NAG 1 1_555 D ND2 ASN 44 D ASN 74 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? covale ? covale7 E O4 NAG . E NAG 1 1_555 E C1 NAG . E NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? covale ? covale8 E O4 NAG . E NAG 2 1_555 E C1 BMA . E BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? covale ? covale9 E O3 BMA . E BMA 3 1_555 E C1 MAN . E MAN 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? covale ? covale10 E O6 BMA . E BMA 3 1_555 E C1 MAN . E MAN 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? metalc ? metalc1 A O PHE 115 A PHE 137 1_555 G NA NA . A NA 407 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.562 ? metalc ? metalc2 A O ASP 342 A ASP 364 1_555 G NA NA . A NA 407 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.541 ? metalc ? metalc3 C O PHE 115 C PHE 137 1_555 L NA NA . C NA 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.079 ? metalc ? metalc4 C O ASP 342 C ASP 364 1_555 L NA NA . C NA 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.437 ? # _chem_comp.formula 'C22 H29 N O2' _chem_comp.formula_weight 339.471 _chem_comp.id QEM _chem_comp.mon_nstd_flag . _chem_comp.name 4-[(1R,2S)-3-(4-benzylpiperidin-1-yl)-1-hydroxy-2-methylpropyl]phenol _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C21 C QEM doub 353 n y C C16 QEM sing 354 n y C H QEM sing 355 n n C10 N QEM sing 356 n n N C13 QEM sing 357 n n N C11 QEM sing 358 n n O C20 QEM sing 359 n n O HO QEM sing 360 n n C02 C01 QEM doub 361 n y C01 C06 QEM sing 362 n y C01 H01 QEM sing 363 n n C15 O01 QEM sing 364 n n O01 HO01 QEM sing 365 n n C07 C02 QEM sing 366 n n C02 C03 QEM sing 367 n y C03 C04 QEM doub 368 n y C03 H03 QEM sing 369 n n C04 C05 QEM sing 370 n y C04 H04 QEM sing 371 n n C06 C05 QEM doub 372 n y C05 H05 QEM sing 373 n n C06 H06 QEM sing 374 n n C07 C08 QEM sing 375 n n C07 H07 QEM sing 376 n n C07 H07A QEM sing 377 n n C09 C08 QEM sing 378 n n C08 C12 QEM sing 379 n n C08 H08 QEM sing 380 n n C09 C10 QEM sing 381 n n C09 H09 QEM sing 382 n n C09 H09A QEM sing 383 n n C10 H10 QEM sing 384 n n C10 H10A QEM sing 385 n n C12 C11 QEM sing 386 n n C11 H11 QEM sing 387 n n C11 H11A QEM sing 388 n n C12 H12 QEM sing 389 n n C12 H12A QEM sing 390 n n C14 C13 QEM sing 391 n n C13 H13 QEM sing 392 n n C13 H13A QEM sing 393 n n C17 C14 QEM sing 394 n n C14 C15 QEM sing 395 n n C14 H14 QEM sing 396 n n C16 C15 QEM sing 397 n n C15 H15 QEM sing 398 n n C16 C18 QEM doub 399 n y C17 H17 QEM sing 400 n n C17 H17A QEM sing 401 n n C17 H17B QEM sing 402 n n C19 C18 QEM sing 403 n y C18 H18 QEM sing 404 n n C20 C19 QEM doub 405 n y C19 H19 QEM sing 406 n n C21 C20 QEM sing 407 n y C21 H21 QEM sing 408 n n # _atom_sites.entry_id 3QEM _atom_sites.fract_transf_matrix[1][1] 0.003731 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001846 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016325 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007725 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code F 4 NAG A 1 406 1 NAG NAG . G 5 NA A 1 407 1 NA NA . H 4 NAG B 1 1 1 NAG NAG . I 4 NAG B 1 395 1 NAG NAG . J 6 QEM B 1 396 1 QEM QEM . K 4 NAG C 1 1 1 NAG NAG . L 5 NA C 1 406 1 NA NA . M 4 NAG D 1 1 1 NAG NAG . N 6 QEM D 1 2 2 QEM QEM . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C QEM . . . J 6 90.309 9.461 -32.014 1 44.6 ? C QEM 396 B 1 HETATM 2 N N QEM . . . J 6 85.718 6.409 -32.303 1 40.09 ? N QEM 396 B 1 HETATM 3 O O QEM . . . J 6 92.074 12.747 -31.808 1 53.77 ? O QEM 396 B 1 HETATM 4 C C01 QEM . . . J 6 80.504 3.105 -31.331 1 41.08 ? C01 QEM 396 B 1 HETATM 5 O O01 QEM . . . J 6 87.965 9.093 -34.765 1 46.2 ? O01 QEM 396 B 1 HETATM 6 C C02 QEM . . . J 6 81.893 2.909 -31.1 1 40.5 ? C02 QEM 396 B 1 HETATM 7 C C03 QEM . . . J 6 82.478 1.677 -31.333 1 37.69 ? C03 QEM 396 B 1 HETATM 8 C C04 QEM . . . J 6 81.689 0.611 -31.806 1 36.01 ? C04 QEM 396 B 1 HETATM 9 C C05 QEM . . . J 6 80.304 0.81 -32.049 1 37.19 ? C05 QEM 396 B 1 HETATM 10 C C06 QEM . . . J 6 79.715 2.039 -31.815 1 36.89 ? C06 QEM 396 B 1 HETATM 11 C C07 QEM . . . J 6 82.744 4.056 -30.585 1 39.72 ? C07 QEM 396 B 1 HETATM 12 C C08 QEM . . . J 6 84.068 4.206 -31.401 1 42.61 ? C08 QEM 396 B 1 HETATM 13 C C09 QEM . . . J 6 84.988 4.883 -30.524 1 45.04 ? C09 QEM 396 B 1 HETATM 14 C C10 QEM . . . J 6 86.139 5.577 -31.197 1 46.52 ? C10 QEM 396 B 1 HETATM 15 C C11 QEM . . . J 6 84.996 5.614 -33.255 1 41.96 ? C11 QEM 396 B 1 HETATM 16 C C12 QEM . . . J 6 83.801 4.954 -32.646 1 44.07 ? C12 QEM 396 B 1 HETATM 17 C C13 QEM . . . J 6 86.36 7.313 -33.251 1 39.47 ? C13 QEM 396 B 1 HETATM 18 C C14 QEM . . . J 6 87.237 8.371 -32.629 1 42.18 ? C14 QEM 396 B 1 HETATM 19 C C15 QEM . . . J 6 88.405 8.643 -33.517 1 45.7 ? C15 QEM 396 B 1 HETATM 20 C C16 QEM . . . J 6 89.376 9.709 -33.03 1 47.75 ? C16 QEM 396 B 1 HETATM 21 C C17 QEM . . . J 6 86.392 9.632 -32.345 1 41.75 ? C17 QEM 396 B 1 HETATM 22 C C18 QEM . . . J 6 89.361 10.95 -33.623 1 49.86 ? C18 QEM 396 B 1 HETATM 23 C C19 QEM . . . J 6 90.248 11.963 -33.221 1 49.04 ? C19 QEM 396 B 1 HETATM 24 C C20 QEM . . . J 6 91.163 11.719 -32.219 1 52.61 ? C20 QEM 396 B 1 HETATM 25 C C21 QEM . . . J 6 91.176 10.459 -31.621 1 48.31 ? C21 QEM 396 B 1 # _model_server_stats.io_time_ms 26 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 20 _model_server_stats.query_time_ms 343 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 25 #