data_3QEO
#
_model_server_result.job_id            BSfjqMJbi8MDWvSvV73UDQ 
_model_server_result.datetime_utc      '2024-11-20 12:19:23' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3qeo 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":261}' 
#
_entry.id    3QEO 
#
_exptl.entry_id    3QEO 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              242.229 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            L-deoxythymidine 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            3QEO 
_cell.length_a            68.76 
_cell.length_b            68.76 
_cell.length_c            120.597 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3QEO 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        76 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 41' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 D N N 
? 3 F N N 
#
_chem_comp.formula           'C10 H14 N2 O5' 
_chem_comp.formula_weight    242.229 
_chem_comp.id                LLT 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              L-deoxythymidine 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     "L-thymidine;beta-L-thymidine;L-dT;2'-deoxy-L-thymidine;1-(2-deoxy-beta-L-erythro-pentofuranosyl)-5-methylpyrimidine-2,4(1H,3H)-dione" 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O4 C4 LLT doub 194 n n 
N3 C4 LLT sing 195 n n 
C4 C5 LLT sing 196 n n 
C5 C7 LLT sing 197 n n 
C5 C6 LLT doub 198 n n 
C7 H7 LLT sing 199 n n 
C7 H7A LLT sing 200 n n 
C7 H7B LLT sing 201 n n 
N1 C6 LLT sing 202 n n 
C6 H6 LLT sing 203 n n 
N3 C2 LLT sing 204 n n 
N3 HN3 LLT sing 205 n n 
O2 C2 LLT doub 206 n n 
C2 N1 LLT sing 207 n n 
N1 C1' LLT sing 208 n n 
O4' C1' LLT sing 209 n n 
C1' C2' LLT sing 210 n n 
C1' H1' LLT sing 211 n n 
O4' C4' LLT sing 212 n n 
C4' C5' LLT sing 213 n n 
C4' C3' LLT sing 214 n n 
C4' H4' LLT sing 215 n n 
O5' C5' LLT sing 216 n n 
C5' H5' LLT sing 217 n n 
C5' "H5'A" LLT sing 218 n n 
O5' HO5' LLT sing 219 n n 
C2' C3' LLT sing 220 n n 
O3' C3' LLT sing 221 n n 
C3' H3' LLT sing 222 n n 
O3' HO3' LLT sing 223 n n 
C2' H2' LLT sing 224 n n 
C2' "H2'A" LLT sing 225 n n 
#
_atom_sites.entry_id                     3QEO 
_atom_sites.fract_transf_matrix[1][1]    0.014543 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.014543 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.008292 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 UDP A 1 401 401 UDP UDP . 
D 3 LLT A 1 261 401 LLT LLT . 
E 2 UDP B 1 402 402 UDP UDP . 
F 3 LLT B 1 261 402 LLT LLT . 
G 4 HOH A 1 262 1 HOH HOH . 
G 4 HOH A 2 263 3 HOH HOH . 
G 4 HOH A 3 264 5 HOH HOH . 
G 4 HOH A 4 265 7 HOH HOH . 
G 4 HOH A 5 266 8 HOH HOH . 
G 4 HOH A 6 267 9 HOH HOH . 
G 4 HOH A 7 268 10 HOH HOH . 
G 4 HOH A 8 269 11 HOH HOH . 
G 4 HOH A 9 270 13 HOH HOH . 
G 4 HOH A 10 271 14 HOH HOH . 
G 4 HOH A 11 272 16 HOH HOH . 
G 4 HOH A 12 273 17 HOH HOH . 
G 4 HOH A 13 274 19 HOH HOH . 
G 4 HOH A 14 275 22 HOH HOH . 
G 4 HOH A 15 276 23 HOH HOH . 
G 4 HOH A 16 277 24 HOH HOH . 
G 4 HOH A 17 278 26 HOH HOH . 
G 4 HOH A 18 279 28 HOH HOH . 
G 4 HOH A 19 280 33 HOH HOH . 
G 4 HOH A 20 281 34 HOH HOH . 
G 4 HOH A 21 282 39 HOH HOH . 
G 4 HOH A 22 283 40 HOH HOH . 
G 4 HOH A 23 284 42 HOH HOH . 
G 4 HOH A 24 285 43 HOH HOH . 
G 4 HOH A 25 286 44 HOH HOH . 
G 4 HOH A 26 287 47 HOH HOH . 
G 4 HOH A 27 288 48 HOH HOH . 
G 4 HOH A 28 289 49 HOH HOH . 
G 4 HOH A 29 290 50 HOH HOH . 
G 4 HOH A 30 291 52 HOH HOH . 
G 4 HOH A 31 292 53 HOH HOH . 
G 4 HOH A 32 293 54 HOH HOH . 
G 4 HOH A 33 294 57 HOH HOH . 
G 4 HOH A 34 295 63 HOH HOH . 
G 4 HOH A 35 296 67 HOH HOH . 
G 4 HOH A 36 297 72 HOH HOH . 
G 4 HOH A 37 298 73 HOH HOH . 
G 4 HOH A 38 299 77 HOH HOH . 
G 4 HOH A 39 300 78 HOH HOH . 
G 4 HOH A 40 301 80 HOH HOH . 
G 4 HOH A 41 302 81 HOH HOH . 
G 4 HOH A 42 303 82 HOH HOH . 
G 4 HOH A 43 304 83 HOH HOH . 
G 4 HOH A 44 305 84 HOH HOH . 
G 4 HOH A 45 306 89 HOH HOH . 
G 4 HOH A 46 307 90 HOH HOH . 
G 4 HOH A 47 308 91 HOH HOH . 
G 4 HOH A 48 309 95 HOH HOH . 
G 4 HOH A 49 310 96 HOH HOH . 
G 4 HOH A 50 311 97 HOH HOH . 
G 4 HOH A 51 312 102 HOH HOH . 
G 4 HOH A 52 313 103 HOH HOH . 
G 4 HOH A 53 314 105 HOH HOH . 
G 4 HOH A 54 315 106 HOH HOH . 
G 4 HOH A 55 317 109 HOH HOH . 
G 4 HOH A 56 318 111 HOH HOH . 
G 4 HOH A 57 319 112 HOH HOH . 
G 4 HOH A 58 320 115 HOH HOH . 
G 4 HOH A 59 321 118 HOH HOH . 
G 4 HOH A 60 322 119 HOH HOH . 
G 4 HOH A 61 323 120 HOH HOH . 
G 4 HOH A 62 324 121 HOH HOH . 
G 4 HOH A 63 325 122 HOH HOH . 
G 4 HOH A 64 326 123 HOH HOH . 
G 4 HOH A 65 327 126 HOH HOH . 
G 4 HOH A 66 328 129 HOH HOH . 
G 4 HOH A 67 329 130 HOH HOH . 
G 4 HOH A 68 330 135 HOH HOH . 
G 4 HOH A 69 331 143 HOH HOH . 
G 4 HOH A 70 332 145 HOH HOH . 
G 4 HOH A 71 333 146 HOH HOH . 
G 4 HOH A 72 334 148 HOH HOH . 
G 4 HOH A 73 335 153 HOH HOH . 
G 4 HOH A 74 336 154 HOH HOH . 
G 4 HOH A 75 337 155 HOH HOH . 
G 4 HOH A 76 338 150 HOH HOH . 
H 4 HOH B 1 262 2 HOH HOH . 
H 4 HOH B 2 263 4 HOH HOH . 
H 4 HOH B 3 264 6 HOH HOH . 
H 4 HOH B 4 265 12 HOH HOH . 
H 4 HOH B 5 266 15 HOH HOH . 
H 4 HOH B 6 267 18 HOH HOH . 
H 4 HOH B 7 268 20 HOH HOH . 
H 4 HOH B 8 269 21 HOH HOH . 
H 4 HOH B 9 270 25 HOH HOH . 
H 4 HOH B 10 271 27 HOH HOH . 
H 4 HOH B 11 272 29 HOH HOH . 
H 4 HOH B 12 273 30 HOH HOH . 
H 4 HOH B 13 274 31 HOH HOH . 
H 4 HOH B 14 275 32 HOH HOH . 
H 4 HOH B 15 276 35 HOH HOH . 
H 4 HOH B 16 277 36 HOH HOH . 
H 4 HOH B 17 278 37 HOH HOH . 
H 4 HOH B 18 279 38 HOH HOH . 
H 4 HOH B 19 280 41 HOH HOH . 
H 4 HOH B 20 281 45 HOH HOH . 
H 4 HOH B 21 282 46 HOH HOH . 
H 4 HOH B 22 283 51 HOH HOH . 
H 4 HOH B 23 284 55 HOH HOH . 
H 4 HOH B 24 285 56 HOH HOH . 
H 4 HOH B 25 286 58 HOH HOH . 
H 4 HOH B 26 287 59 HOH HOH . 
H 4 HOH B 27 288 60 HOH HOH . 
H 4 HOH B 28 289 61 HOH HOH . 
H 4 HOH B 29 290 62 HOH HOH . 
H 4 HOH B 30 291 64 HOH HOH . 
H 4 HOH B 31 292 65 HOH HOH . 
H 4 HOH B 32 293 66 HOH HOH . 
H 4 HOH B 33 294 68 HOH HOH . 
H 4 HOH B 34 295 69 HOH HOH . 
H 4 HOH B 35 296 70 HOH HOH . 
H 4 HOH B 36 297 71 HOH HOH . 
H 4 HOH B 37 298 74 HOH HOH . 
H 4 HOH B 38 299 75 HOH HOH . 
H 4 HOH B 39 300 76 HOH HOH . 
H 4 HOH B 40 301 79 HOH HOH . 
H 4 HOH B 41 302 85 HOH HOH . 
H 4 HOH B 42 303 86 HOH HOH . 
H 4 HOH B 43 304 87 HOH HOH . 
H 4 HOH B 44 305 88 HOH HOH . 
H 4 HOH B 45 306 92 HOH HOH . 
H 4 HOH B 46 307 93 HOH HOH . 
H 4 HOH B 47 308 94 HOH HOH . 
H 4 HOH B 48 309 98 HOH HOH . 
H 4 HOH B 49 310 99 HOH HOH . 
H 4 HOH B 50 311 100 HOH HOH . 
H 4 HOH B 51 312 101 HOH HOH . 
H 4 HOH B 52 313 104 HOH HOH . 
H 4 HOH B 53 314 108 HOH HOH . 
H 4 HOH B 54 315 110 HOH HOH . 
H 4 HOH B 55 316 107 HOH HOH . 
H 4 HOH B 56 317 114 HOH HOH . 
H 4 HOH B 57 318 116 HOH HOH . 
H 4 HOH B 58 319 117 HOH HOH . 
H 4 HOH B 59 320 124 HOH HOH . 
H 4 HOH B 60 321 125 HOH HOH . 
H 4 HOH B 61 322 127 HOH HOH . 
H 4 HOH B 62 323 128 HOH HOH . 
H 4 HOH B 63 324 131 HOH HOH . 
H 4 HOH B 64 325 132 HOH HOH . 
H 4 HOH B 65 326 133 HOH HOH . 
H 4 HOH B 66 327 134 HOH HOH . 
H 4 HOH B 67 328 136 HOH HOH . 
H 4 HOH B 68 329 137 HOH HOH . 
H 4 HOH B 69 330 138 HOH HOH . 
H 4 HOH B 70 331 139 HOH HOH . 
H 4 HOH B 71 332 140 HOH HOH . 
H 4 HOH B 72 333 141 HOH HOH . 
H 4 HOH B 73 334 142 HOH HOH . 
H 4 HOH B 74 335 144 HOH HOH . 
H 4 HOH B 75 336 147 HOH HOH . 
H 4 HOH B 76 337 149 HOH HOH . 
H 4 HOH B 77 338 113 HOH HOH . 
H 4 HOH B 78 339 151 HOH HOH . 
H 4 HOH B 79 340 152 HOH HOH . 
H 4 HOH B 80 341 156 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O O4 LLT . . . F 3 9.447 25.662 -4.315 1 62.88 ? O4 LLT 261 B 1 
HETATM 2 C C4 LLT . . . F 3 10.017 26.874 -4.068 1 64.08 ? C4 LLT 261 B 1 
HETATM 3 C C5 LLT . . . F 3 11.38 27.012 -3.859 1 64.36 ? C5 LLT 261 B 1 
HETATM 4 C C7 LLT . . . F 3 12.333 25.855 -3.894 1 64.51 ? C7 LLT 261 B 1 
HETATM 5 C C6 LLT . . . F 3 11.894 28.268 -3.608 1 65.08 ? C6 LLT 261 B 1 
HETATM 6 N N3 LLT . . . F 3 9.245 27.982 -4.012 1 64.76 ? N3 LLT 261 B 1 
HETATM 7 C C2 LLT . . . F 3 9.772 29.211 -3.762 1 66.14 ? C2 LLT 261 B 1 
HETATM 8 O O2 LLT . . . F 3 8.935 30.29 -3.719 1 65.43 ? O2 LLT 261 B 1 
HETATM 9 N N1 LLT . . . F 3 11.103 29.354 -3.555 1 66.27 ? N1 LLT 261 B 1 
HETATM 10 C C1' LLT . . . F 3 11.709 30.675 -3.296 1 67.11 ? C1' LLT 261 B 1 
HETATM 11 O O4' LLT . . . F 3 12.893 30.567 -2.483 1 67.17 ? O4' LLT 261 B 1 
HETATM 12 C C4' LLT . . . F 3 14.076 30.835 -3.256 1 67.62 ? C4' LLT 261 B 1 
HETATM 13 C C5' LLT . . . F 3 15.158 29.791 -2.958 1 67.66 ? C5' LLT 261 B 1 
HETATM 14 O O5' LLT . . . F 3 15.708 29.199 -4.148 1 67.15 ? O5' LLT 261 B 1 
HETATM 15 C C3' LLT . . . F 3 13.615 30.861 -4.71 1 67.51 ? C3' LLT 261 B 1 
HETATM 16 O O3' LLT . . . F 3 14.359 31.795 -5.488 1 68.06 ? O3' LLT 261 B 1 
HETATM 17 C C2' LLT . . . F 3 12.15 31.253 -4.636 1 67.17 ? C2' LLT 261 B 1 
#
_model_server_stats.io_time_ms              57 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           299 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           17 
#