data_3QF1 # _model_server_result.job_id blTDlTzmM7MLgfs5pEcN_A _model_server_result.datetime_utc '2024-10-19 12:21:34' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3qf1 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":610}' # _entry.id 3QF1 # _exptl.entry_id 3QF1 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 126.904 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'IODIDE ION' _entity.pdbx_number_of_molecules 10 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 102.37 _cell.angle_gamma 90 _cell.entry_id 3QF1 _cell.length_a 54.15 _cell.length_b 80.18 _cell.length_c 76.73 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3QF1 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 6 G N N ? 6 H N N ? 6 I N N ? 6 J N N ? 6 K N N ? 6 L N N ? 6 M N N ? 6 N N N ? 6 O N N ? 6 P N N # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 2 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_1 NAG _pdbx_entity_branch_link.comp_id_2 NAG _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O4 _pdbx_entity_branch_link.leaving_atom_id_2 HO4 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n B NAG 1 B 1 NAG A 602 NAG 2 n B NAG 2 B 2 NAG A 603 NAG # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 6 A CYS 6 1_555 A SG CYS 167 A CYS 167 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.014 ? disulf ? disulf2 A SG CYS 15 A CYS 15 1_555 A SG CYS 28 A CYS 28 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf3 A SG CYS 129 A CYS 129 1_555 A SG CYS 139 A CYS 139 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf4 A SG CYS 133 A CYS 133 1_555 A SG CYS 157 A CYS 157 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? disulf ? disulf5 A SG CYS 237 A CYS 237 1_555 A SG CYS 248 A CYS 248 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? disulf ? disulf6 A SG CYS 456 A CYS 456 1_555 A SG CYS 513 A CYS 513 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? disulf ? disulf7 A SG CYS 554 A CYS 554 1_555 A SG CYS 579 A CYS 579 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? covale ? covale1 A C PRO 197 A PRO 197 1_555 A N SEP 198 A SEP 198 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.319 ? covale ? covale2 A C SEP 198 A SEP 198 1_555 A N LEU 199 A LEU 199 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.322 ? covale ? covale3 A ND2 ASN 205 A ASN 205 1_555 C C1 NAG . A NAG 599 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.475 ? covale ? covale4 A ND2 ASN 241 A ASN 241 1_555 B C1 NAG . B NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.478 ? covale ? covale5 A ND2 ASN 332 A ASN 332 1_555 D C1 NAG . A NAG 605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? covale ? covale6 B O4 NAG . B NAG 1 1_555 B C1 NAG . B NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.465 ? metalc ? metalc1 A OD1 ASP 110 A ASP 110 1_555 E CA CA . A CA 607 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.285 ? metalc ? metalc2 A O ASP 110 A ASP 110 1_555 E CA CA . A CA 607 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.371 ? metalc ? metalc3 A OG1 THR 184 A THR 184 1_555 E CA CA . A CA 607 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.465 ? metalc ? metalc4 A O THR 184 A THR 184 1_555 E CA CA . A CA 607 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.566 ? metalc ? metalc5 A O PHE 186 A PHE 186 1_555 E CA CA . A CA 607 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.256 ? metalc ? metalc6 A OD1 ASP 188 A ASP 188 1_555 E CA CA . A CA 607 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.286 ? metalc ? metalc7 A OG SER 190 A SER 190 1_555 E CA CA . A CA 607 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.368 ? metalc ? metalc8 A NE2 HIS 351 A HIS 351 1_555 F FE HEM . A HEM 618 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.306 ? metalc ? metalc9 F FE HEM . A HEM 618 1_555 U O HOH . A HOH 747 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.789 ? # _chem_comp.formula 'I -1' _chem_comp.formula_weight 126.904 _chem_comp.id IOD _chem_comp.mon_nstd_flag . _chem_comp.name 'IODIDE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 3QF1 _atom_sites.fract_transf_matrix[1][1] 0.018467 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.00405 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012472 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013342 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 NAG A 1 599 599 NAG NAG . D 3 NAG A 1 605 605 NAG NAG . E 4 CA A 1 607 607 CA CA . F 5 HEM A 1 618 618 HEM HEM . G 6 IOD A 1 609 609 IOD IOD . H 6 IOD A 1 610 610 IOD IOD . I 6 IOD A 1 611 611 IOD IOD . J 6 IOD A 1 612 612 IOD IOD . K 6 IOD A 1 615 615 IOD IOD . L 6 IOD A 1 616 616 IOD IOD . M 6 IOD A 1 617 617 IOD IOD . N 6 IOD A 1 1618 1618 IOD IOD . O 6 IOD A 1 619 619 IOD IOD . P 6 IOD A 1 620 620 IOD IOD . Q 7 PZE A 1 6951 6951 PZE PZE . R 8 SCN A 1 6788 6788 SCN SCN . S 9 GOL A 1 597 597 GOL GOL . T 10 EDO A 1 598 598 EDO EDO . U 11 HOH A 1 608 608 HOH HOH . U 11 HOH A 2 613 613 HOH HOH . U 11 HOH A 3 614 614 HOH HOH . U 11 HOH A 4 621 621 HOH HOH . U 11 HOH A 5 622 622 HOH HOH . U 11 HOH A 6 623 623 HOH HOH . U 11 HOH A 7 624 624 HOH HOH . U 11 HOH A 8 625 625 HOH HOH . U 11 HOH A 9 626 626 HOH HOH . U 11 HOH A 10 627 627 HOH HOH . U 11 HOH A 11 628 628 HOH HOH . U 11 HOH A 12 629 629 HOH HOH . U 11 HOH A 13 630 630 HOH HOH . U 11 HOH A 14 631 631 HOH HOH . U 11 HOH A 15 632 632 HOH HOH . U 11 HOH A 16 633 633 HOH HOH . U 11 HOH A 17 634 634 HOH HOH . U 11 HOH A 18 635 635 HOH HOH . U 11 HOH A 19 636 636 HOH HOH . U 11 HOH A 20 637 637 HOH HOH . U 11 HOH A 21 638 638 HOH HOH . U 11 HOH A 22 639 639 HOH HOH . U 11 HOH A 23 640 640 HOH HOH . U 11 HOH A 24 641 641 HOH HOH . U 11 HOH A 25 642 642 HOH HOH . U 11 HOH A 26 643 643 HOH HOH . U 11 HOH A 27 644 644 HOH HOH . U 11 HOH A 28 645 645 HOH HOH . U 11 HOH A 29 646 646 HOH HOH . U 11 HOH A 30 647 647 HOH HOH . U 11 HOH A 31 648 648 HOH HOH . U 11 HOH A 32 649 649 HOH HOH . U 11 HOH A 33 650 650 HOH HOH . U 11 HOH A 34 651 651 HOH HOH . U 11 HOH A 35 652 652 HOH HOH . U 11 HOH A 36 653 653 HOH HOH . U 11 HOH A 37 654 654 HOH HOH . U 11 HOH A 38 655 655 HOH HOH . U 11 HOH A 39 656 656 HOH HOH . U 11 HOH A 40 657 657 HOH HOH . U 11 HOH A 41 658 658 HOH HOH . U 11 HOH A 42 659 659 HOH HOH . U 11 HOH A 43 660 660 HOH HOH . U 11 HOH A 44 661 661 HOH HOH . U 11 HOH A 45 662 662 HOH HOH . U 11 HOH A 46 663 663 HOH HOH . U 11 HOH A 47 665 665 HOH HOH . U 11 HOH A 48 666 666 HOH HOH . U 11 HOH A 49 667 667 HOH HOH . U 11 HOH A 50 668 668 HOH HOH . U 11 HOH A 51 669 669 HOH HOH . U 11 HOH A 52 670 670 HOH HOH . U 11 HOH A 53 671 671 HOH HOH . U 11 HOH A 54 672 672 HOH HOH . U 11 HOH A 55 673 673 HOH HOH . U 11 HOH A 56 674 674 HOH HOH . U 11 HOH A 57 675 675 HOH HOH . U 11 HOH A 58 676 676 HOH HOH . U 11 HOH A 59 677 677 HOH HOH . U 11 HOH A 60 678 678 HOH HOH . U 11 HOH A 61 680 680 HOH HOH . U 11 HOH A 62 681 681 HOH HOH . U 11 HOH A 63 682 682 HOH HOH . U 11 HOH A 64 683 683 HOH HOH . U 11 HOH A 65 684 684 HOH HOH . U 11 HOH A 66 685 685 HOH HOH . U 11 HOH A 67 686 686 HOH HOH . U 11 HOH A 68 687 687 HOH HOH . U 11 HOH A 69 688 688 HOH HOH . U 11 HOH A 70 689 689 HOH HOH . U 11 HOH A 71 690 690 HOH HOH . U 11 HOH A 72 691 691 HOH HOH . U 11 HOH A 73 692 692 HOH HOH . U 11 HOH A 74 693 693 HOH HOH . U 11 HOH A 75 694 694 HOH HOH . U 11 HOH A 76 695 695 HOH HOH . U 11 HOH A 77 696 696 HOH HOH . U 11 HOH A 78 697 697 HOH HOH . U 11 HOH A 79 698 698 HOH HOH . U 11 HOH A 80 699 699 HOH HOH . U 11 HOH A 81 701 701 HOH HOH . U 11 HOH A 82 702 702 HOH HOH . U 11 HOH A 83 703 703 HOH HOH . U 11 HOH A 84 704 704 HOH HOH . U 11 HOH A 85 705 705 HOH HOH . U 11 HOH A 86 706 706 HOH HOH . U 11 HOH A 87 707 707 HOH HOH . U 11 HOH A 88 708 708 HOH HOH . U 11 HOH A 89 709 709 HOH HOH . U 11 HOH A 90 710 710 HOH HOH . U 11 HOH A 91 711 711 HOH HOH . U 11 HOH A 92 712 712 HOH HOH . U 11 HOH A 93 713 713 HOH HOH . U 11 HOH A 94 714 714 HOH HOH . U 11 HOH A 95 715 715 HOH HOH . U 11 HOH A 96 716 716 HOH HOH . U 11 HOH A 97 717 717 HOH HOH . U 11 HOH A 98 718 718 HOH HOH . U 11 HOH A 99 719 719 HOH HOH . U 11 HOH A 100 720 720 HOH HOH . U 11 HOH A 101 721 721 HOH HOH . U 11 HOH A 102 722 722 HOH HOH . U 11 HOH A 103 723 723 HOH HOH . U 11 HOH A 104 724 724 HOH HOH . U 11 HOH A 105 725 725 HOH HOH . U 11 HOH A 106 727 727 HOH HOH . U 11 HOH A 107 728 728 HOH HOH . U 11 HOH A 108 729 729 HOH HOH . U 11 HOH A 109 730 730 HOH HOH . U 11 HOH A 110 732 732 HOH HOH . U 11 HOH A 111 733 733 HOH HOH . U 11 HOH A 112 734 734 HOH HOH . U 11 HOH A 113 736 736 HOH HOH . U 11 HOH A 114 737 737 HOH HOH . U 11 HOH A 115 738 738 HOH HOH . U 11 HOH A 116 739 739 HOH HOH . U 11 HOH A 117 740 740 HOH HOH . U 11 HOH A 118 741 741 HOH HOH . U 11 HOH A 119 742 742 HOH HOH . U 11 HOH A 120 743 743 HOH HOH . U 11 HOH A 121 744 744 HOH HOH . U 11 HOH A 122 745 745 HOH HOH . U 11 HOH A 123 746 746 HOH HOH . U 11 HOH A 124 747 747 HOH HOH . U 11 HOH A 125 748 748 HOH HOH . U 11 HOH A 126 749 749 HOH HOH . U 11 HOH A 127 750 750 HOH HOH . U 11 HOH A 128 751 751 HOH HOH . U 11 HOH A 129 752 752 HOH HOH . U 11 HOH A 130 753 753 HOH HOH . U 11 HOH A 131 754 754 HOH HOH . U 11 HOH A 132 755 755 HOH HOH . U 11 HOH A 133 756 756 HOH HOH . U 11 HOH A 134 757 757 HOH HOH . U 11 HOH A 135 758 758 HOH HOH . U 11 HOH A 136 759 759 HOH HOH . U 11 HOH A 137 760 760 HOH HOH . U 11 HOH A 138 761 761 HOH HOH . U 11 HOH A 139 762 762 HOH HOH . U 11 HOH A 140 763 763 HOH HOH . U 11 HOH A 141 764 764 HOH HOH . U 11 HOH A 142 765 765 HOH HOH . U 11 HOH A 143 766 766 HOH HOH . U 11 HOH A 144 767 767 HOH HOH . U 11 HOH A 145 768 768 HOH HOH . U 11 HOH A 146 769 769 HOH HOH . U 11 HOH A 147 770 770 HOH HOH . U 11 HOH A 148 771 771 HOH HOH . U 11 HOH A 149 772 772 HOH HOH . U 11 HOH A 150 773 773 HOH HOH . U 11 HOH A 151 774 774 HOH HOH . U 11 HOH A 152 775 775 HOH HOH . U 11 HOH A 153 776 776 HOH HOH . U 11 HOH A 154 777 777 HOH HOH . U 11 HOH A 155 778 778 HOH HOH . U 11 HOH A 156 779 779 HOH HOH . U 11 HOH A 157 780 780 HOH HOH . U 11 HOH A 158 781 781 HOH HOH . U 11 HOH A 159 782 782 HOH HOH . U 11 HOH A 160 783 783 HOH HOH . U 11 HOH A 161 784 784 HOH HOH . U 11 HOH A 162 785 785 HOH HOH . U 11 HOH A 163 786 786 HOH HOH . U 11 HOH A 164 787 787 HOH HOH . U 11 HOH A 165 788 788 HOH HOH . U 11 HOH A 166 789 789 HOH HOH . U 11 HOH A 167 790 790 HOH HOH . U 11 HOH A 168 791 791 HOH HOH . U 11 HOH A 169 792 792 HOH HOH . U 11 HOH A 170 793 793 HOH HOH . U 11 HOH A 171 794 794 HOH HOH . U 11 HOH A 172 795 795 HOH HOH . U 11 HOH A 173 796 796 HOH HOH . U 11 HOH A 174 797 797 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol I _atom_site.label_atom_id I _atom_site.label_comp_id IOD _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id H _atom_site.label_entity_id 6 _atom_site.Cartn_x -13.166 _atom_site.Cartn_y 13.827 _atom_site.Cartn_z 21.661 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 82.25 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id I _atom_site.auth_comp_id IOD _atom_site.auth_seq_id 610 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 18 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 355 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 1 #