data_3QF3
#
_model_server_result.job_id            1sjUVfuIXixdnh0WExfIGw 
_model_server_result.datetime_utc      '2025-03-04 21:42:13' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3qf3 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"H","auth_seq_id":134}' 
#
_entry.id    3QF3 
#
_exptl.entry_id    3QF3 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              134.087 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            D-MALATE 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          95.8 
_cell.angle_gamma         90 
_cell.entry_id            3QF3 
_cell.length_a            52.209 
_cell.length_b            81.702 
_cell.length_c            124.798 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3QF3 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
PISA dimeric 2 author_and_software_defined_assembly 3 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,G,J,K 1 1 
C,D,H,L,M 2 1 
E,F,I,N,O 3 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 H N N 
? 3 I N N 
#
_chem_comp.formula           'C4 H6 O5' 
_chem_comp.formula_weight    134.087 
_chem_comp.id                MLT 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              D-MALATE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     '(2R)-2-HYDROXYBUTANEDIOIC ACID;2-HYDROXY-SUCCINIC ACID' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 MLT doub 251 n n 
C1 O2 MLT sing 252 n n 
C1 C2 MLT sing 253 n n 
C2 O3 MLT sing 254 n n 
C2 C3 MLT sing 255 n n 
C2 H2 MLT sing 256 n n 
O3 HO3 MLT sing 257 n n 
C3 C4 MLT sing 258 n n 
C3 H31 MLT sing 259 n n 
C3 H32 MLT sing 260 n n 
C4 O4 MLT doub 261 n n 
C4 O5 MLT sing 262 n n 
O5 HO5 MLT sing 263 n n 
O2 H6 MLT sing 264 n n 
#
_atom_sites.entry_id                     3QF3 
_atom_sites.fract_transf_matrix[1][1]    0.019154 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.001946 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.01224 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.008054 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
G 2 LMR A 1 134 3 LMR MLT . 
H 3 MLT B 1 134 1 MLT MLT . 
I 3 MLT E 1 134 2 MLT MLT . 
J 4 HOH A 1 135 21 HOH HOH . 
J 4 HOH A 2 136 63 HOH HOH . 
J 4 HOH A 3 137 74 HOH HOH . 
J 4 HOH A 4 138 87 HOH HOH . 
J 4 HOH A 5 143 143 HOH HOH . 
J 4 HOH A 6 166 166 HOH HOH . 
J 4 HOH A 7 193 193 HOH HOH . 
J 4 HOH A 8 194 194 HOH HOH . 
J 4 HOH A 9 195 195 HOH HOH . 
J 4 HOH A 10 197 197 HOH HOH . 
J 4 HOH A 11 294 294 HOH HOH . 
J 4 HOH A 12 295 295 HOH HOH . 
J 4 HOH A 13 296 296 HOH HOH . 
J 4 HOH A 14 298 298 HOH HOH . 
J 4 HOH A 15 299 299 HOH HOH . 
J 4 HOH A 16 300 300 HOH HOH . 
J 4 HOH A 17 301 301 HOH HOH . 
J 4 HOH A 18 306 306 HOH HOH . 
J 4 HOH A 19 307 307 HOH HOH . 
K 4 HOH D 1 134 1 HOH HOH . 
K 4 HOH D 2 135 15 HOH HOH . 
K 4 HOH D 3 136 32 HOH HOH . 
K 4 HOH D 4 137 33 HOH HOH . 
K 4 HOH D 5 138 37 HOH HOH . 
K 4 HOH D 6 139 139 HOH HOH . 
K 4 HOH D 7 140 42 HOH HOH . 
K 4 HOH D 8 141 48 HOH HOH . 
K 4 HOH D 9 142 51 HOH HOH . 
K 4 HOH D 10 143 57 HOH HOH . 
K 4 HOH D 11 144 60 HOH HOH . 
K 4 HOH D 12 145 65 HOH HOH . 
K 4 HOH D 13 146 66 HOH HOH . 
K 4 HOH D 14 147 69 HOH HOH . 
K 4 HOH D 15 148 148 HOH HOH . 
K 4 HOH D 16 149 149 HOH HOH . 
K 4 HOH D 17 150 70 HOH HOH . 
K 4 HOH D 18 151 73 HOH HOH . 
K 4 HOH D 19 152 83 HOH HOH . 
K 4 HOH D 20 153 86 HOH HOH . 
K 4 HOH D 21 154 105 HOH HOH . 
K 4 HOH D 22 155 110 HOH HOH . 
K 4 HOH D 23 156 112 HOH HOH . 
K 4 HOH D 24 157 125 HOH HOH . 
K 4 HOH D 25 173 173 HOH HOH . 
K 4 HOH D 26 191 191 HOH HOH . 
K 4 HOH D 27 199 199 HOH HOH . 
K 4 HOH D 28 200 200 HOH HOH . 
K 4 HOH D 29 201 201 HOH HOH . 
K 4 HOH D 30 202 202 HOH HOH . 
K 4 HOH D 31 203 203 HOH HOH . 
K 4 HOH D 32 204 204 HOH HOH . 
K 4 HOH D 33 205 205 HOH HOH . 
K 4 HOH D 34 290 290 HOH HOH . 
K 4 HOH D 35 322 322 HOH HOH . 
K 4 HOH D 36 334 334 HOH HOH . 
K 4 HOH D 37 360 360 HOH HOH . 
K 4 HOH D 38 362 362 HOH HOH . 
L 4 HOH B 1 135 5 HOH HOH . 
L 4 HOH B 2 136 23 HOH HOH . 
L 4 HOH B 3 137 28 HOH HOH . 
L 4 HOH B 4 138 138 HOH HOH . 
L 4 HOH B 5 139 31 HOH HOH . 
L 4 HOH B 6 140 38 HOH HOH . 
L 4 HOH B 7 141 45 HOH HOH . 
L 4 HOH B 8 142 49 HOH HOH . 
L 4 HOH B 9 143 52 HOH HOH . 
L 4 HOH B 10 144 81 HOH HOH . 
L 4 HOH B 11 145 97 HOH HOH . 
L 4 HOH B 12 146 103 HOH HOH . 
L 4 HOH B 13 147 129 HOH HOH . 
L 4 HOH B 14 148 132 HOH HOH . 
L 4 HOH B 15 155 155 HOH HOH . 
L 4 HOH B 16 159 159 HOH HOH . 
L 4 HOH B 17 160 160 HOH HOH . 
L 4 HOH B 18 168 168 HOH HOH . 
L 4 HOH B 19 179 179 HOH HOH . 
L 4 HOH B 20 208 208 HOH HOH . 
L 4 HOH B 21 209 209 HOH HOH . 
L 4 HOH B 22 210 210 HOH HOH . 
L 4 HOH B 23 211 211 HOH HOH . 
L 4 HOH B 24 212 212 HOH HOH . 
L 4 HOH B 25 214 214 HOH HOH . 
L 4 HOH B 26 215 215 HOH HOH . 
L 4 HOH B 27 271 271 HOH HOH . 
L 4 HOH B 28 275 275 HOH HOH . 
L 4 HOH B 29 278 278 HOH HOH . 
L 4 HOH B 30 279 279 HOH HOH . 
L 4 HOH B 31 280 280 HOH HOH . 
L 4 HOH B 32 281 281 HOH HOH . 
L 4 HOH B 33 283 283 HOH HOH . 
L 4 HOH B 34 288 288 HOH HOH . 
L 4 HOH B 35 302 302 HOH HOH . 
L 4 HOH B 36 312 312 HOH HOH . 
L 4 HOH B 37 313 313 HOH HOH . 
L 4 HOH B 38 314 314 HOH HOH . 
L 4 HOH B 39 315 315 HOH HOH . 
L 4 HOH B 40 316 316 HOH HOH . 
L 4 HOH B 41 317 317 HOH HOH . 
L 4 HOH B 42 318 318 HOH HOH . 
L 4 HOH B 43 319 319 HOH HOH . 
L 4 HOH B 44 320 320 HOH HOH . 
L 4 HOH B 45 321 321 HOH HOH . 
L 4 HOH B 46 363 363 HOH HOH . 
M 4 HOH C 1 134 2 HOH HOH . 
M 4 HOH C 2 135 7 HOH HOH . 
M 4 HOH C 3 136 136 HOH HOH . 
M 4 HOH C 4 137 8 HOH HOH . 
M 4 HOH C 5 138 16 HOH HOH . 
M 4 HOH C 6 139 18 HOH HOH . 
M 4 HOH C 7 140 34 HOH HOH . 
M 4 HOH C 8 141 36 HOH HOH . 
M 4 HOH C 9 142 40 HOH HOH . 
M 4 HOH C 10 143 44 HOH HOH . 
M 4 HOH C 11 144 144 HOH HOH . 
M 4 HOH C 12 145 46 HOH HOH . 
M 4 HOH C 13 146 146 HOH HOH . 
M 4 HOH C 14 147 147 HOH HOH . 
M 4 HOH C 15 148 53 HOH HOH . 
M 4 HOH C 16 149 54 HOH HOH . 
M 4 HOH C 17 150 68 HOH HOH . 
M 4 HOH C 18 151 75 HOH HOH . 
M 4 HOH C 19 152 92 HOH HOH . 
M 4 HOH C 20 153 153 HOH HOH . 
M 4 HOH C 21 154 98 HOH HOH . 
M 4 HOH C 22 155 99 HOH HOH . 
M 4 HOH C 23 156 156 HOH HOH . 
M 4 HOH C 24 157 116 HOH HOH . 
M 4 HOH C 25 158 118 HOH HOH . 
M 4 HOH C 26 163 163 HOH HOH . 
M 4 HOH C 27 169 169 HOH HOH . 
M 4 HOH C 28 255 255 HOH HOH . 
M 4 HOH C 29 256 256 HOH HOH . 
M 4 HOH C 30 257 257 HOH HOH . 
M 4 HOH C 31 258 258 HOH HOH . 
M 4 HOH C 32 259 259 HOH HOH . 
M 4 HOH C 33 260 260 HOH HOH . 
M 4 HOH C 34 264 264 HOH HOH . 
M 4 HOH C 35 265 265 HOH HOH . 
M 4 HOH C 36 266 266 HOH HOH . 
M 4 HOH C 37 269 269 HOH HOH . 
M 4 HOH C 38 273 273 HOH HOH . 
M 4 HOH C 39 336 336 HOH HOH . 
M 4 HOH C 40 338 338 HOH HOH . 
M 4 HOH C 41 339 339 HOH HOH . 
M 4 HOH C 42 341 341 HOH HOH . 
M 4 HOH C 43 344 344 HOH HOH . 
N 4 HOH E 1 135 135 HOH HOH . 
N 4 HOH E 2 136 3 HOH HOH . 
N 4 HOH E 3 137 4 HOH HOH . 
N 4 HOH E 4 138 11 HOH HOH . 
N 4 HOH E 5 139 24 HOH HOH . 
N 4 HOH E 6 140 41 HOH HOH . 
N 4 HOH E 7 141 141 HOH HOH . 
N 4 HOH E 8 142 56 HOH HOH . 
N 4 HOH E 9 143 62 HOH HOH . 
N 4 HOH E 10 144 67 HOH HOH . 
N 4 HOH E 11 145 84 HOH HOH . 
N 4 HOH E 12 146 91 HOH HOH . 
N 4 HOH E 13 147 101 HOH HOH . 
N 4 HOH E 14 148 102 HOH HOH . 
N 4 HOH E 15 149 104 HOH HOH . 
N 4 HOH E 16 150 150 HOH HOH . 
N 4 HOH E 17 151 106 HOH HOH . 
N 4 HOH E 18 152 152 HOH HOH . 
N 4 HOH E 19 153 113 HOH HOH . 
N 4 HOH E 20 154 117 HOH HOH . 
N 4 HOH E 21 155 127 HOH HOH . 
N 4 HOH E 22 156 134 HOH HOH . 
N 4 HOH E 23 164 164 HOH HOH . 
N 4 HOH E 24 167 167 HOH HOH . 
N 4 HOH E 25 178 178 HOH HOH . 
N 4 HOH E 26 222 222 HOH HOH . 
N 4 HOH E 27 224 224 HOH HOH . 
N 4 HOH E 28 234 234 HOH HOH . 
N 4 HOH E 29 235 235 HOH HOH . 
N 4 HOH E 30 244 244 HOH HOH . 
N 4 HOH E 31 245 245 HOH HOH . 
N 4 HOH E 32 246 246 HOH HOH . 
N 4 HOH E 33 249 249 HOH HOH . 
N 4 HOH E 34 254 254 HOH HOH . 
N 4 HOH E 35 304 304 HOH HOH . 
N 4 HOH E 36 311 311 HOH HOH . 
N 4 HOH E 37 326 326 HOH HOH . 
N 4 HOH E 38 327 327 HOH HOH . 
N 4 HOH E 39 328 328 HOH HOH . 
N 4 HOH E 40 329 329 HOH HOH . 
O 4 HOH F 1 134 9 HOH HOH . 
O 4 HOH F 2 135 13 HOH HOH . 
O 4 HOH F 3 136 14 HOH HOH . 
O 4 HOH F 4 137 17 HOH HOH . 
O 4 HOH F 5 138 26 HOH HOH . 
O 4 HOH F 6 139 39 HOH HOH . 
O 4 HOH F 7 140 43 HOH HOH . 
O 4 HOH F 8 141 47 HOH HOH . 
O 4 HOH F 9 142 50 HOH HOH . 
O 4 HOH F 10 143 55 HOH HOH . 
O 4 HOH F 11 144 61 HOH HOH . 
O 4 HOH F 12 145 145 HOH HOH . 
O 4 HOH F 13 146 78 HOH HOH . 
O 4 HOH F 14 147 80 HOH HOH . 
O 4 HOH F 15 148 85 HOH HOH . 
O 4 HOH F 16 149 89 HOH HOH . 
O 4 HOH F 17 150 90 HOH HOH . 
O 4 HOH F 18 151 107 HOH HOH . 
O 4 HOH F 19 152 108 HOH HOH . 
O 4 HOH F 20 153 131 HOH HOH . 
O 4 HOH F 21 165 165 HOH HOH . 
O 4 HOH F 22 177 177 HOH HOH . 
O 4 HOH F 23 180 180 HOH HOH . 
O 4 HOH F 24 219 219 HOH HOH . 
O 4 HOH F 25 220 220 HOH HOH . 
O 4 HOH F 26 226 226 HOH HOH . 
O 4 HOH F 27 227 227 HOH HOH . 
O 4 HOH F 28 228 228 HOH HOH . 
O 4 HOH F 29 231 231 HOH HOH . 
O 4 HOH F 30 233 233 HOH HOH . 
O 4 HOH F 31 236 236 HOH HOH . 
O 4 HOH F 32 237 237 HOH HOH . 
O 4 HOH F 33 238 238 HOH HOH . 
O 4 HOH F 34 239 239 HOH HOH . 
O 4 HOH F 35 240 240 HOH HOH . 
O 4 HOH F 36 242 242 HOH HOH . 
O 4 HOH F 37 325 325 HOH HOH . 
O 4 HOH F 38 331 331 HOH HOH . 
O 4 HOH F 39 332 332 HOH HOH . 
O 4 HOH F 40 333 333 HOH HOH . 
O 4 HOH F 41 345 345 HOH HOH . 
O 4 HOH F 42 347 347 HOH HOH . 
O 4 HOH F 43 348 348 HOH HOH . 
O 4 HOH F 44 349 349 HOH HOH . 
O 4 HOH F 45 351 351 HOH HOH . 
O 4 HOH F 46 361 361 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 MLT . . . H 3 0.372 2.382 -46.192 1 67.92 ? C1 MLT 134 B 1 
HETATM 2 O O1 MLT . . . H 3 0.486 2.027 -47.398 1 48.86 ? O1 MLT 134 B 1 
HETATM 3 O O2 MLT . . . H 3 -0.568 3.133 -45.876 1 84.11 ? O2 MLT 134 B 1 
HETATM 4 C C2 MLT . . . H 3 1.311 1.956 -45.093 1 68.33 ? C2 MLT 134 B 1 
HETATM 5 O O3 MLT . . . H 3 2.089 3.057 -44.661 1 72.23 ? O3 MLT 134 B 1 
HETATM 6 C C3 MLT . . . H 3 2.194 0.777 -45.506 1 63.59 ? C3 MLT 134 B 1 
HETATM 7 C C4 MLT . . . H 3 1.65 -0.503 -44.911 1 71.56 ? C4 MLT 134 B 1 
HETATM 8 O O4 MLT . . . H 3 2.435 -1.364 -44.466 1 87.43 ? O4 MLT 134 B 1 
HETATM 9 O O5 MLT . . . H 3 0.424 -0.736 -44.83 1 64.6 ? O5 MLT 134 B 1 
#
_model_server_stats.io_time_ms              16 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    8 
_model_server_stats.query_time_ms           306 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           9 
#