data_3QF4 # _model_server_result.job_id 34PwhtPiy9-H_R8XgyCe5w _model_server_result.datetime_utc '2024-12-06 10:57:09' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3qf4 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":578}' # _entry.id 3QF4 # _exptl.entry_id 3QF4 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 506.196 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 91.92 _cell.angle_gamma 90 _cell.entry_id 3QF4 _cell.length_a 216.33 _cell.length_b 84.31 _cell.length_c 115.78 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3QF4 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OG SER 383 A SER 373 1_555 D MG MG . A MG 579 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.474 ? metalc ? metalc2 A OE1 GLN 424 A GLN 414 1_555 D MG MG . A MG 579 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.832 ? metalc ? metalc3 C O1G ANP . A ANP 578 1_555 D MG MG . A MG 579 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.442 ? metalc ? metalc4 C O2B ANP . A ANP 578 1_555 D MG MG . A MG 579 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.612 ? # _chem_comp.formula 'C10 H17 N6 O12 P3' _chem_comp.formula_weight 506.196 _chem_comp.id ANP _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ANP doub 13 n n PG O2G ANP sing 14 n n PG O3G ANP sing 15 n n PG N3B ANP sing 16 n n O2G HOG2 ANP sing 17 n n O3G HOG3 ANP sing 18 n n PB O1B ANP doub 19 n n PB O2B ANP sing 20 n n PB N3B ANP sing 21 n n PB O3A ANP sing 22 n n O2B HOB2 ANP sing 23 n n N3B HNB1 ANP sing 24 n n PA O1A ANP doub 25 n n PA O2A ANP sing 26 n n PA O3A ANP sing 27 n n PA O5' ANP sing 28 n n O2A HOA2 ANP sing 29 n n O5' C5' ANP sing 30 n n C5' C4' ANP sing 31 n n C5' "H5'1" ANP sing 32 n n C5' "H5'2" ANP sing 33 n n C4' O4' ANP sing 34 n n C4' C3' ANP sing 35 n n C4' H4' ANP sing 36 n n O4' C1' ANP sing 37 n n C3' O3' ANP sing 38 n n C3' C2' ANP sing 39 n n C3' H3' ANP sing 40 n n O3' HO3' ANP sing 41 n n C2' O2' ANP sing 42 n n C2' C1' ANP sing 43 n n C2' H2' ANP sing 44 n n O2' HO2' ANP sing 45 n n C1' N9 ANP sing 46 n n C1' H1' ANP sing 47 n n N9 C8 ANP sing 48 n y N9 C4 ANP sing 49 n y C8 N7 ANP doub 50 n y C8 H8 ANP sing 51 n n N7 C5 ANP sing 52 n y C5 C6 ANP sing 53 n y C5 C4 ANP doub 54 n y C6 N6 ANP sing 55 n n C6 N1 ANP doub 56 n y N6 HN61 ANP sing 57 n n N6 HN62 ANP sing 58 n n N1 C2 ANP sing 59 n y C2 N3 ANP doub 60 n y C2 H2 ANP sing 61 n n N3 C4 ANP sing 62 n y # _atom_sites.entry_id 3QF4 _atom_sites.fract_transf_matrix[1][1] 0.004623 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000155 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011861 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008642 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 ANP A 1 578 1 ANP ANP . D 4 MG A 1 579 1 MG MG . E 5 HOH A 1 580 1 HOH HOH . E 5 HOH A 2 581 3 HOH HOH . E 5 HOH A 3 582 4 HOH HOH . F 5 HOH B 1 599 2 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ANP . . . C 3 -81.331 16.688 48.65 1 93.02 ? PG ANP 578 A 1 HETATM 2 O O1G ANP . . . C 3 -79.851 16.525 48.881 1 85.88 ? O1G ANP 578 A 1 HETATM 3 O O2G ANP . . . C 3 -82.179 16.516 49.887 1 108.33 ? O2G ANP 578 A 1 HETATM 4 O O3G ANP . . . C 3 -81.844 15.931 47.447 1 89.22 ? O3G ANP 578 A 1 HETATM 5 P PB ANP . . . C 3 -80.958 19.678 49.185 1 97.38 ? PB ANP 578 A 1 HETATM 6 O O1B ANP . . . C 3 -82.162 20.491 49.587 1 104.56 ? O1B ANP 578 A 1 HETATM 7 O O2B ANP . . . C 3 -80.061 19.147 50.278 1 65.17 ? O2B ANP 578 A 1 HETATM 8 N N3B ANP . . . C 3 -81.513 18.361 48.177 1 102.35 ? N3B ANP 578 A 1 HETATM 9 P PA ANP . . . C 3 -78.716 21.321 48.519 1 91.73 ? PA ANP 578 A 1 HETATM 10 O O1A ANP . . . C 3 -78.853 22.092 49.811 1 94.54 ? O1A ANP 578 A 1 HETATM 11 O O2A ANP . . . C 3 -77.611 20.302 48.365 1 97.28 ? O2A ANP 578 A 1 HETATM 12 O O3A ANP . . . C 3 -80.1 20.58 48.157 1 179.79 ? O3A ANP 578 A 1 HETATM 13 O O5' ANP . . . C 3 -78.539 22.355 47.295 1 109.66 ? O5' ANP 578 A 1 HETATM 14 C C5' ANP . . . C 3 -79.53 23.315 46.936 1 113.35 ? C5' ANP 578 A 1 HETATM 15 C C4' ANP . . . C 3 -79.232 23.81 45.522 1 112.93 ? C4' ANP 578 A 1 HETATM 16 O O4' ANP . . . C 3 -77.858 24.181 45.408 1 105.15 ? O4' ANP 578 A 1 HETATM 17 C C3' ANP . . . C 3 -79.487 22.754 44.461 1 116.49 ? C3' ANP 578 A 1 HETATM 18 O O3' ANP . . . C 3 -80.132 23.361 43.338 1 118.39 ? O3' ANP 578 A 1 HETATM 19 C C2' ANP . . . C 3 -78.121 22.271 44.036 1 107.22 ? C2' ANP 578 A 1 HETATM 20 O O2' ANP . . . C 3 -78.116 22.064 42.624 1 103.12 ? O2' ANP 578 A 1 HETATM 21 C C1' ANP . . . C 3 -77.19 23.409 44.403 1 106.73 ? C1' ANP 578 A 1 HETATM 22 N N9 ANP . . . C 3 -75.914 22.915 44.97 1 108.21 ? N9 ANP 578 A 1 HETATM 23 C C8 ANP . . . C 3 -75.787 22.047 45.989 1 106.99 ? C8 ANP 578 A 1 HETATM 24 N N7 ANP . . . C 3 -74.482 21.823 46.282 1 103.96 ? N7 ANP 578 A 1 HETATM 25 C C5 ANP . . . C 3 -73.748 22.569 45.438 1 107.8 ? C5 ANP 578 A 1 HETATM 26 C C6 ANP . . . C 3 -72.305 22.803 45.205 1 108.88 ? C6 ANP 578 A 1 HETATM 27 N N6 ANP . . . C 3 -71.371 22.174 45.955 1 110.41 ? N6 ANP 578 A 1 HETATM 28 N N1 ANP . . . C 3 -71.957 23.662 44.223 1 112.92 ? N1 ANP 578 A 1 HETATM 29 C C2 ANP . . . C 3 -72.882 24.291 43.475 1 118.75 ? C2 ANP 578 A 1 HETATM 30 N N3 ANP . . . C 3 -74.209 24.128 43.631 1 117.78 ? N3 ANP 578 A 1 HETATM 31 C C4 ANP . . . C 3 -74.696 23.294 44.581 1 112.35 ? C4 ANP 578 A 1 # _model_server_stats.io_time_ms 20 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 15 _model_server_stats.query_time_ms 221 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 31 #