data_3QF8 # _model_server_result.job_id nskn0U3nHvkd2dbNuypzfg _model_server_result.datetime_utc '2025-03-03 00:51:01' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3qf8 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":12}' # _entry.id 3QF8 # _exptl.entry_id 3QF8 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 137.327 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'BARIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3QF8 _cell.length_a 42.239 _cell.length_b 42.239 _cell.length_c 39.379 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3QF8 _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 8_555 -y,-x,-z+1/2 0 -1 0 -1 0 0 0 0 -1 0 0 19.6895 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A N7 DG 3 A DG 3 1_555 C BA BA . A BA 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.044 ? metalc ? metalc2 A O6 DG 4 A DG 4 1_555 C BA BA . A BA 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.984 ? metalc ? metalc3 C BA BA . A BA 12 1_555 D O HOH . A HOH 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.98 ? metalc ? metalc4 C BA BA . A BA 12 1_555 D O HOH . A HOH 35 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.442 ? metalc ? metalc5 C BA BA . A BA 12 1_555 D O HOH . A HOH 42 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.929 ? metalc ? metalc6 C BA BA . A BA 12 1_555 D O HOH . A HOH 55 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.87 ? metalc ? metalc7 C BA BA . A BA 12 1_555 D O HOH . A HOH 59 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.616 ? metalc ? metalc8 C BA BA . A BA 12 1_555 D O HOH . A HOH 138 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.014 ? hydrog WATSON-CRICK hydrog1 A N3 DC 2 A DC 2 1_555 A N1 DG 9 A DG 9 8_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog2 A N4 DC 2 A DC 2 1_555 A O6 DG 9 A DG 9 8_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog3 A O2 DC 2 A DC 2 1_555 A N2 DG 9 A DG 9 8_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog4 A N1 DG 3 A DG 3 1_555 A N3 DC 8 A DC 8 8_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog5 A N2 DG 3 A DG 3 1_555 A O2 DC 8 A DC 8 8_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog6 A O6 DG 3 A DG 3 1_555 A N4 DC 8 A DC 8 8_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog7 A N1 DG 4 A DG 4 1_555 A N3 DC 7 A DC 7 8_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog8 A N2 DG 4 A DG 4 1_555 A O2 DC 7 A DC 7 8_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog9 A O6 DG 4 A DG 4 1_555 A N4 DC 7 A DC 7 8_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog10 A N3 DC 5 A DC 5 1_555 A N1 DG 6 A DG 6 8_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog11 A N4 DC 5 A DC 5 1_555 A O6 DG 6 A DG 6 8_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog12 A O2 DC 5 A DC 5 1_555 A N2 DG 6 A DG 6 8_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog13 A N1 DG 6 A DG 6 1_555 A N3 DC 5 A DC 5 8_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog14 A N2 DG 6 A DG 6 1_555 A O2 DC 5 A DC 5 8_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog15 A O6 DG 6 A DG 6 1_555 A N4 DC 5 A DC 5 8_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog16 A N3 DC 7 A DC 7 1_555 A N1 DG 4 A DG 4 8_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog17 A N4 DC 7 A DC 7 1_555 A O6 DG 4 A DG 4 8_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog18 A O2 DC 7 A DC 7 1_555 A N2 DG 4 A DG 4 8_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog19 A N3 DC 8 A DC 8 1_555 A N1 DG 3 A DG 3 8_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog20 A N4 DC 8 A DC 8 1_555 A O6 DG 3 A DG 3 8_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog21 A O2 DC 8 A DC 8 1_555 A N2 DG 3 A DG 3 8_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog22 A N1 DG 9 A DG 9 1_555 A N3 DC 2 A DC 2 8_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog23 A N2 DG 9 A DG 9 1_555 A O2 DC 2 A DC 2 8_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog24 A O6 DG 9 A DG 9 1_555 A N4 DC 2 A DC 2 8_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? # _chem_comp.formula 'Ba 2' _chem_comp.formula_weight 137.327 _chem_comp.id BA _chem_comp.mon_nstd_flag . _chem_comp.name 'BARIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 3QF8 _atom_sites.fract_transf_matrix[1][1] 0.023675 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.023675 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.025394 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 RKL A 1 11 1 RKL RKL . C 3 BA A 1 12 1 BA HA . D 4 HOH A 1 13 13 HOH HOH . D 4 HOH A 2 14 14 HOH HOH . D 4 HOH A 3 15 15 HOH HOH . D 4 HOH A 4 16 16 HOH HOH . D 4 HOH A 5 17 1 HOH HOH . D 4 HOH A 6 18 2 HOH HOH . D 4 HOH A 7 19 19 HOH HOH . D 4 HOH A 8 20 20 HOH HOH . D 4 HOH A 9 21 21 HOH HOH . D 4 HOH A 10 22 22 HOH HOH . D 4 HOH A 11 23 23 HOH HOH . D 4 HOH A 12 24 24 HOH HOH . D 4 HOH A 13 25 25 HOH HOH . D 4 HOH A 14 26 26 HOH HOH . D 4 HOH A 15 27 3 HOH HOH . D 4 HOH A 16 28 28 HOH HOH . D 4 HOH A 17 29 29 HOH HOH . D 4 HOH A 18 30 30 HOH HOH . D 4 HOH A 19 31 31 HOH HOH . D 4 HOH A 20 32 32 HOH HOH . D 4 HOH A 21 33 33 HOH HOH . D 4 HOH A 22 34 34 HOH HOH . D 4 HOH A 23 35 4 HOH HOH . D 4 HOH A 24 36 36 HOH HOH . D 4 HOH A 25 37 5 HOH HOH . D 4 HOH A 26 38 38 HOH HOH . D 4 HOH A 27 39 39 HOH HOH . D 4 HOH A 28 40 40 HOH HOH . D 4 HOH A 29 41 6 HOH HOH . D 4 HOH A 30 42 42 HOH HOH . D 4 HOH A 31 43 43 HOH HOH . D 4 HOH A 32 44 44 HOH HOH . D 4 HOH A 33 45 45 HOH HOH . D 4 HOH A 34 46 8 HOH HOH . D 4 HOH A 35 47 47 HOH HOH . D 4 HOH A 36 48 9 HOH HOH . D 4 HOH A 37 49 49 HOH HOH . D 4 HOH A 38 50 50 HOH HOH . D 4 HOH A 39 51 51 HOH HOH . D 4 HOH A 40 52 52 HOH HOH . D 4 HOH A 41 53 53 HOH HOH . D 4 HOH A 42 54 54 HOH HOH . D 4 HOH A 43 55 55 HOH HOH . D 4 HOH A 44 56 56 HOH HOH . D 4 HOH A 45 57 57 HOH HOH . D 4 HOH A 46 58 58 HOH HOH . D 4 HOH A 47 59 10 HOH HOH . D 4 HOH A 48 60 60 HOH HOH . D 4 HOH A 49 61 61 HOH HOH . D 4 HOH A 50 62 62 HOH HOH . D 4 HOH A 51 63 12 HOH HOH . D 4 HOH A 52 64 64 HOH HOH . D 4 HOH A 53 66 66 HOH HOH . D 4 HOH A 54 67 67 HOH HOH . D 4 HOH A 55 68 68 HOH HOH . D 4 HOH A 56 69 69 HOH HOH . D 4 HOH A 57 70 70 HOH HOH . D 4 HOH A 58 72 72 HOH HOH . D 4 HOH A 59 73 73 HOH HOH . D 4 HOH A 60 74 74 HOH HOH . D 4 HOH A 61 75 75 HOH HOH . D 4 HOH A 62 76 76 HOH HOH . D 4 HOH A 63 77 77 HOH HOH . D 4 HOH A 64 78 78 HOH HOH . D 4 HOH A 65 79 79 HOH HOH . D 4 HOH A 66 80 80 HOH HOH . D 4 HOH A 67 81 81 HOH HOH . D 4 HOH A 68 82 82 HOH HOH . D 4 HOH A 69 83 83 HOH HOH . D 4 HOH A 70 84 84 HOH HOH . D 4 HOH A 71 85 85 HOH HOH . D 4 HOH A 72 86 86 HOH HOH . D 4 HOH A 73 88 88 HOH HOH . D 4 HOH A 74 89 89 HOH HOH . D 4 HOH A 75 95 95 HOH HOH . D 4 HOH A 76 108 108 HOH HOH . D 4 HOH A 77 114 114 HOH HOH . D 4 HOH A 78 115 115 HOH HOH . D 4 HOH A 79 122 122 HOH HOH . D 4 HOH A 80 123 123 HOH HOH . D 4 HOH A 81 124 124 HOH HOH . D 4 HOH A 82 125 125 HOH HOH . D 4 HOH A 83 133 133 HOH HOH . D 4 HOH A 84 134 134 HOH HOH . D 4 HOH A 85 136 136 HOH HOH . D 4 HOH A 86 137 137 HOH HOH . D 4 HOH A 87 138 138 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol BA _atom_site.label_atom_id BA _atom_site.label_comp_id BA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id C _atom_site.label_entity_id 3 _atom_site.Cartn_x 11.049 _atom_site.Cartn_y -14.09 _atom_site.Cartn_z 13.991 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 16.4 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id BA _atom_site.auth_comp_id BA _atom_site.auth_seq_id 12 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 1 _model_server_stats.query_time_ms 274 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 1 #