data_3QFB # _model_server_result.job_id ZOvyxs7LHXGJYFHeqvensQ _model_server_result.datetime_utc '2024-11-05 17:16:37' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3qfb # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":801}' # _entry.id 3QFB # _exptl.entry_id 3QFB _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 95.33 _cell.angle_gamma 90 _cell.entry_id 3QFB _cell.length_a 71.27 _cell.length_b 121.7 _cell.length_c 73.89 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3QFB _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 F N N ? 4 G N N ? 4 H N N ? 4 I N N ? 4 K N N ? 4 L N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 79 A CYS 59 1_555 A SG CYS 84 A CYS 64 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.052 ? disulf ? disulf2 A SG CYS 518 A CYS 498 1_555 D SG CYS 43 D CYS 32 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.049 ? disulf ? disulf3 B SG CYS 79 B CYS 59 1_555 B SG CYS 84 B CYS 64 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.05 ? disulf ? disulf4 B SG CYS 518 B CYS 498 1_555 C SG CYS 43 C CYS 32 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 220 n n C1 C2 GOL sing 221 n n C1 H11 GOL sing 222 n n C1 H12 GOL sing 223 n n O1 HO1 GOL sing 224 n n C2 O2 GOL sing 225 n n C2 C3 GOL sing 226 n n C2 H2 GOL sing 227 n n O2 HO2 GOL sing 228 n n C3 O3 GOL sing 229 n n C3 H31 GOL sing 230 n n C3 H32 GOL sing 231 n n O3 HO3 GOL sing 232 n n # _atom_sites.entry_id 3QFB _atom_sites.fract_transf_matrix[1][1] 0.014031 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001309 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008217 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013592 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 FAD A 1 600 600 FAD FAD . F 4 GOL A 1 801 801 GOL GOL . G 4 GOL A 1 802 802 GOL GOL . H 4 GOL A 1 804 804 GOL GOL . I 4 GOL A 1 806 806 GOL GOL . J 3 FAD B 1 600 600 FAD FAD . K 4 GOL B 1 807 807 GOL GOL . L 4 GOL B 1 808 808 GOL GOL . M 5 HOH A 1 500 500 HOH HOH . M 5 HOH A 2 501 501 HOH HOH . M 5 HOH A 3 502 502 HOH HOH . M 5 HOH A 4 503 503 HOH HOH . M 5 HOH A 5 504 504 HOH HOH . M 5 HOH A 6 505 505 HOH HOH . M 5 HOH A 7 506 506 HOH HOH . M 5 HOH A 8 507 507 HOH HOH . M 5 HOH A 9 508 508 HOH HOH . M 5 HOH A 10 509 509 HOH HOH . M 5 HOH A 11 510 510 HOH HOH . M 5 HOH A 12 511 511 HOH HOH . M 5 HOH A 13 512 512 HOH HOH . M 5 HOH A 14 513 513 HOH HOH . M 5 HOH A 15 514 514 HOH HOH . M 5 HOH A 16 515 515 HOH HOH . M 5 HOH A 17 516 516 HOH HOH . M 5 HOH A 18 517 517 HOH HOH . M 5 HOH A 19 518 518 HOH HOH . M 5 HOH A 20 519 519 HOH HOH . M 5 HOH A 21 520 520 HOH HOH . M 5 HOH A 22 521 521 HOH HOH . M 5 HOH A 23 522 522 HOH HOH . M 5 HOH A 24 523 523 HOH HOH . M 5 HOH A 25 524 524 HOH HOH . M 5 HOH A 26 525 525 HOH HOH . M 5 HOH A 27 526 526 HOH HOH . M 5 HOH A 28 527 527 HOH HOH . M 5 HOH A 29 528 528 HOH HOH . M 5 HOH A 30 529 529 HOH HOH . M 5 HOH A 31 530 530 HOH HOH . M 5 HOH A 32 531 531 HOH HOH . M 5 HOH A 33 532 532 HOH HOH . M 5 HOH A 34 533 533 HOH HOH . M 5 HOH A 35 534 534 HOH HOH . M 5 HOH A 36 535 535 HOH HOH . M 5 HOH A 37 536 536 HOH HOH . M 5 HOH A 38 537 537 HOH HOH . M 5 HOH A 39 538 538 HOH HOH . M 5 HOH A 40 539 539 HOH HOH . M 5 HOH A 41 540 540 HOH HOH . M 5 HOH A 42 541 541 HOH HOH . M 5 HOH A 43 542 542 HOH HOH . M 5 HOH A 44 543 543 HOH HOH . M 5 HOH A 45 544 544 HOH HOH . M 5 HOH A 46 545 545 HOH HOH . M 5 HOH A 47 546 546 HOH HOH . M 5 HOH A 48 547 547 HOH HOH . M 5 HOH A 49 548 548 HOH HOH . M 5 HOH A 50 549 549 HOH HOH . M 5 HOH A 51 550 550 HOH HOH . M 5 HOH A 52 551 551 HOH HOH . M 5 HOH A 53 552 552 HOH HOH . M 5 HOH A 54 553 553 HOH HOH . M 5 HOH A 55 554 554 HOH HOH . M 5 HOH A 56 555 555 HOH HOH . M 5 HOH A 57 556 556 HOH HOH . M 5 HOH A 58 557 557 HOH HOH . M 5 HOH A 59 558 558 HOH HOH . M 5 HOH A 60 559 559 HOH HOH . M 5 HOH A 61 560 560 HOH HOH . M 5 HOH A 62 561 561 HOH HOH . M 5 HOH A 63 562 562 HOH HOH . M 5 HOH A 64 563 563 HOH HOH . M 5 HOH A 65 564 564 HOH HOH . M 5 HOH A 66 565 565 HOH HOH . M 5 HOH A 67 566 566 HOH HOH . M 5 HOH A 68 567 567 HOH HOH . M 5 HOH A 69 568 568 HOH HOH . M 5 HOH A 70 569 569 HOH HOH . M 5 HOH A 71 570 570 HOH HOH . M 5 HOH A 72 571 571 HOH HOH . M 5 HOH A 73 572 572 HOH HOH . M 5 HOH A 74 573 573 HOH HOH . M 5 HOH A 75 574 574 HOH HOH . M 5 HOH A 76 575 575 HOH HOH . M 5 HOH A 77 576 576 HOH HOH . M 5 HOH A 78 577 577 HOH HOH . M 5 HOH A 79 578 578 HOH HOH . M 5 HOH A 80 579 579 HOH HOH . M 5 HOH A 81 580 580 HOH HOH . M 5 HOH A 82 581 581 HOH HOH . M 5 HOH A 83 582 582 HOH HOH . M 5 HOH A 84 583 583 HOH HOH . M 5 HOH A 85 584 584 HOH HOH . M 5 HOH A 86 585 585 HOH HOH . M 5 HOH A 87 586 586 HOH HOH . M 5 HOH A 88 587 587 HOH HOH . M 5 HOH A 89 588 588 HOH HOH . M 5 HOH A 90 589 589 HOH HOH . M 5 HOH A 91 590 590 HOH HOH . M 5 HOH A 92 591 591 HOH HOH . M 5 HOH A 93 592 592 HOH HOH . M 5 HOH A 94 593 593 HOH HOH . M 5 HOH A 95 594 594 HOH HOH . M 5 HOH A 96 595 595 HOH HOH . M 5 HOH A 97 596 596 HOH HOH . M 5 HOH A 98 597 597 HOH HOH . M 5 HOH A 99 598 598 HOH HOH . M 5 HOH A 100 599 599 HOH HOH . M 5 HOH A 101 601 601 HOH HOH . M 5 HOH A 102 602 602 HOH HOH . M 5 HOH A 103 603 603 HOH HOH . M 5 HOH A 104 604 604 HOH HOH . M 5 HOH A 105 605 605 HOH HOH . M 5 HOH A 106 606 606 HOH HOH . M 5 HOH A 107 607 607 HOH HOH . M 5 HOH A 108 608 608 HOH HOH . M 5 HOH A 109 609 609 HOH HOH . M 5 HOH A 110 610 610 HOH HOH . M 5 HOH A 111 611 611 HOH HOH . M 5 HOH A 112 612 612 HOH HOH . M 5 HOH A 113 613 613 HOH HOH . M 5 HOH A 114 614 614 HOH HOH . M 5 HOH A 115 615 615 HOH HOH . M 5 HOH A 116 616 616 HOH HOH . M 5 HOH A 117 617 617 HOH HOH . M 5 HOH A 118 618 618 HOH HOH . M 5 HOH A 119 619 619 HOH HOH . M 5 HOH A 120 620 620 HOH HOH . M 5 HOH A 121 621 621 HOH HOH . M 5 HOH A 122 622 622 HOH HOH . M 5 HOH A 123 623 623 HOH HOH . N 5 HOH B 1 500 500 HOH HOH . N 5 HOH B 2 501 501 HOH HOH . N 5 HOH B 3 502 502 HOH HOH . N 5 HOH B 4 503 503 HOH HOH . N 5 HOH B 5 504 504 HOH HOH . N 5 HOH B 6 505 505 HOH HOH . N 5 HOH B 7 506 506 HOH HOH . N 5 HOH B 8 507 507 HOH HOH . N 5 HOH B 9 508 508 HOH HOH . N 5 HOH B 10 509 509 HOH HOH . N 5 HOH B 11 510 510 HOH HOH . N 5 HOH B 12 511 511 HOH HOH . N 5 HOH B 13 512 512 HOH HOH . N 5 HOH B 14 513 513 HOH HOH . N 5 HOH B 15 514 514 HOH HOH . N 5 HOH B 16 515 515 HOH HOH . N 5 HOH B 17 516 516 HOH HOH . N 5 HOH B 18 517 517 HOH HOH . N 5 HOH B 19 518 518 HOH HOH . N 5 HOH B 20 519 519 HOH HOH . N 5 HOH B 21 520 520 HOH HOH . N 5 HOH B 22 521 521 HOH HOH . N 5 HOH B 23 522 522 HOH HOH . N 5 HOH B 24 523 523 HOH HOH . N 5 HOH B 25 524 524 HOH HOH . N 5 HOH B 26 525 525 HOH HOH . N 5 HOH B 27 526 526 HOH HOH . N 5 HOH B 28 527 527 HOH HOH . N 5 HOH B 29 528 528 HOH HOH . N 5 HOH B 30 529 529 HOH HOH . N 5 HOH B 31 530 530 HOH HOH . N 5 HOH B 32 531 531 HOH HOH . N 5 HOH B 33 532 532 HOH HOH . N 5 HOH B 34 533 533 HOH HOH . N 5 HOH B 35 534 534 HOH HOH . N 5 HOH B 36 535 535 HOH HOH . N 5 HOH B 37 536 536 HOH HOH . N 5 HOH B 38 537 537 HOH HOH . N 5 HOH B 39 538 538 HOH HOH . N 5 HOH B 40 539 539 HOH HOH . N 5 HOH B 41 540 540 HOH HOH . N 5 HOH B 42 541 541 HOH HOH . N 5 HOH B 43 542 542 HOH HOH . N 5 HOH B 44 543 543 HOH HOH . N 5 HOH B 45 544 544 HOH HOH . N 5 HOH B 46 545 545 HOH HOH . N 5 HOH B 47 546 546 HOH HOH . N 5 HOH B 48 547 547 HOH HOH . N 5 HOH B 49 548 548 HOH HOH . N 5 HOH B 50 549 549 HOH HOH . N 5 HOH B 51 550 550 HOH HOH . N 5 HOH B 52 551 551 HOH HOH . N 5 HOH B 53 552 552 HOH HOH . N 5 HOH B 54 553 553 HOH HOH . N 5 HOH B 55 554 554 HOH HOH . N 5 HOH B 56 555 555 HOH HOH . N 5 HOH B 57 556 556 HOH HOH . N 5 HOH B 58 557 557 HOH HOH . N 5 HOH B 59 558 558 HOH HOH . N 5 HOH B 60 559 559 HOH HOH . N 5 HOH B 61 560 560 HOH HOH . N 5 HOH B 62 561 561 HOH HOH . N 5 HOH B 63 562 562 HOH HOH . N 5 HOH B 64 563 563 HOH HOH . N 5 HOH B 65 564 564 HOH HOH . N 5 HOH B 66 565 565 HOH HOH . N 5 HOH B 67 566 566 HOH HOH . N 5 HOH B 68 567 567 HOH HOH . N 5 HOH B 69 568 568 HOH HOH . N 5 HOH B 70 569 569 HOH HOH . N 5 HOH B 71 570 570 HOH HOH . N 5 HOH B 72 571 571 HOH HOH . N 5 HOH B 73 572 572 HOH HOH . N 5 HOH B 74 573 573 HOH HOH . N 5 HOH B 75 574 574 HOH HOH . N 5 HOH B 76 575 575 HOH HOH . N 5 HOH B 77 576 576 HOH HOH . N 5 HOH B 78 577 577 HOH HOH . N 5 HOH B 79 578 578 HOH HOH . N 5 HOH B 80 579 579 HOH HOH . N 5 HOH B 81 580 580 HOH HOH . N 5 HOH B 82 581 581 HOH HOH . N 5 HOH B 83 582 582 HOH HOH . N 5 HOH B 84 583 583 HOH HOH . N 5 HOH B 85 584 584 HOH HOH . N 5 HOH B 86 585 585 HOH HOH . N 5 HOH B 87 586 586 HOH HOH . N 5 HOH B 88 587 587 HOH HOH . N 5 HOH B 89 588 588 HOH HOH . N 5 HOH B 90 589 589 HOH HOH . N 5 HOH B 91 590 590 HOH HOH . N 5 HOH B 92 591 591 HOH HOH . N 5 HOH B 93 592 592 HOH HOH . N 5 HOH B 94 593 593 HOH HOH . O 5 HOH C 1 106 106 HOH HOH . O 5 HOH C 2 107 107 HOH HOH . O 5 HOH C 3 108 108 HOH HOH . O 5 HOH C 4 109 109 HOH HOH . O 5 HOH C 5 110 110 HOH HOH . O 5 HOH C 6 111 111 HOH HOH . O 5 HOH C 7 112 112 HOH HOH . O 5 HOH C 8 127 127 HOH HOH . O 5 HOH C 9 136 136 HOH HOH . O 5 HOH C 10 140 140 HOH HOH . O 5 HOH C 11 176 176 HOH HOH . O 5 HOH C 12 185 185 HOH HOH . O 5 HOH C 13 219 219 HOH HOH . P 5 HOH D 1 106 106 HOH HOH . P 5 HOH D 2 107 107 HOH HOH . P 5 HOH D 3 139 139 HOH HOH . P 5 HOH D 4 167 167 HOH HOH . P 5 HOH D 5 200 200 HOH HOH . P 5 HOH D 6 204 204 HOH HOH . P 5 HOH D 7 218 218 HOH HOH . P 5 HOH D 8 235 235 HOH HOH . P 5 HOH D 9 242 242 HOH HOH . P 5 HOH D 10 244 244 HOH HOH . P 5 HOH D 11 245 245 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . F 4 57.842 -129.56 26.461 1 71.19 ? C1 GOL 801 A 1 HETATM 2 O O1 GOL . . . F 4 57.686 -130.493 27.776 1 67.44 ? O1 GOL 801 A 1 HETATM 3 C C2 GOL . . . F 4 58.021 -128.16 26.443 1 71.05 ? C2 GOL 801 A 1 HETATM 4 O O2 GOL . . . F 4 56.893 -127.518 26.764 1 71.01 ? O2 GOL 801 A 1 HETATM 5 C C3 GOL . . . F 4 59.16 -127.885 26.132 1 71.52 ? C3 GOL 801 A 1 HETATM 6 O O3 GOL . . . F 4 60.656 -128.049 25.711 1 70 ? O3 GOL 801 A 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 36 _model_server_stats.query_time_ms 219 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 6 #