data_3QFR # _model_server_result.job_id yQiGGqzBOBCTG8gEdJ7MYw _model_server_result.datetime_utc '2024-11-23 00:47:00' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3qfr # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":751}' # _entry.id 3QFR # _exptl.entry_id 3QFR _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 456.344 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FLAVIN MONONUCLEOTIDE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3QFR _cell.length_a 70.276 _cell.length_b 120.393 _cell.length_c 156.345 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3QFR _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,J 1 1 B,G,H,I,K 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 H N N # _struct_conn.conn_type_id metalc _struct_conn.details ? _struct_conn.id metalc1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id OD1 _struct_conn.ptnr1_label_comp_id ASN _struct_conn.ptnr1_label_seq_id 533 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id ASN _struct_conn.ptnr1_auth_seq_id 595 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id F _struct_conn.ptnr2_label_atom_id CA _struct_conn.ptnr2_label_comp_id CA _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id CA _struct_conn.ptnr2_auth_seq_id 761 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.927 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C17 H21 N4 O9 P' _chem_comp.formula_weight 456.344 _chem_comp.id FMN _chem_comp.mon_nstd_flag . _chem_comp.name 'FLAVIN MONONUCLEOTIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'RIBOFLAVIN MONOPHOSPHATE' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 FMN sing 174 n n N1 C10 FMN doub 175 n n C2 O2 FMN doub 176 n n C2 N3 FMN sing 177 n n N3 C4 FMN sing 178 n n N3 HN3 FMN sing 179 n n C4 O4 FMN doub 180 n n C4 C4A FMN sing 181 n n C4A N5 FMN doub 182 n n C4A C10 FMN sing 183 n n N5 C5A FMN sing 184 n n C5A C6 FMN doub 185 n y C5A C9A FMN sing 186 n y C6 C7 FMN sing 187 n y C6 H6 FMN sing 188 n n C7 C7M FMN sing 189 n n C7 C8 FMN doub 190 n y C7M HM71 FMN sing 191 n n C7M HM72 FMN sing 192 n n C7M HM73 FMN sing 193 n n C8 C8M FMN sing 194 n n C8 C9 FMN sing 195 n y C8M HM81 FMN sing 196 n n C8M HM82 FMN sing 197 n n C8M HM83 FMN sing 198 n n C9 C9A FMN doub 199 n y C9 H9 FMN sing 200 n n C9A N10 FMN sing 201 n n N10 C10 FMN sing 202 n n N10 C1' FMN sing 203 n n C1' C2' FMN sing 204 n n C1' "H1'1" FMN sing 205 n n C1' "H1'2" FMN sing 206 n n C2' O2' FMN sing 207 n n C2' C3' FMN sing 208 n n C2' H2' FMN sing 209 n n O2' HO2' FMN sing 210 n n C3' O3' FMN sing 211 n n C3' C4' FMN sing 212 n n C3' H3' FMN sing 213 n n O3' HO3' FMN sing 214 n n C4' O4' FMN sing 215 n n C4' C5' FMN sing 216 n n C4' H4' FMN sing 217 n n O4' HO4' FMN sing 218 n n C5' O5' FMN sing 219 n n C5' "H5'1" FMN sing 220 n n C5' "H5'2" FMN sing 221 n n O5' P FMN sing 222 n n P O1P FMN doub 223 n n P O2P FMN sing 224 n n P O3P FMN sing 225 n n O2P HOP2 FMN sing 226 n n O3P HOP3 FMN sing 227 n n # _atom_sites.entry_id 3QFR _atom_sites.fract_transf_matrix[1][1] 0.01423 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008306 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006396 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 FAD A 1 752 752 FAD FAD . D 3 FMN A 1 751 751 FMN FMN . E 4 NAP A 1 753 753 NAP NAP . F 5 CA A 1 761 761 CA CA . G 2 FAD B 1 752 752 FAD FAD . H 3 FMN B 1 751 751 FMN FMN . I 4 NAP B 1 753 753 NAP NAP . J 6 HOH A 1 2 2 HOH WAT . J 6 HOH A 2 3 3 HOH WAT . J 6 HOH A 3 5 5 HOH WAT . J 6 HOH A 4 6 6 HOH WAT . J 6 HOH A 5 7 7 HOH WAT . J 6 HOH A 6 8 8 HOH WAT . J 6 HOH A 7 9 9 HOH WAT . J 6 HOH A 8 10 10 HOH WAT . J 6 HOH A 9 11 11 HOH WAT . J 6 HOH A 10 12 12 HOH WAT . J 6 HOH A 11 13 13 HOH WAT . J 6 HOH A 12 14 14 HOH WAT . J 6 HOH A 13 15 15 HOH WAT . J 6 HOH A 14 16 16 HOH WAT . J 6 HOH A 15 18 18 HOH WAT . J 6 HOH A 16 21 21 HOH WAT . J 6 HOH A 17 22 22 HOH WAT . J 6 HOH A 18 23 23 HOH WAT . J 6 HOH A 19 25 25 HOH WAT . J 6 HOH A 20 26 26 HOH WAT . J 6 HOH A 21 27 27 HOH WAT . J 6 HOH A 22 28 28 HOH WAT . J 6 HOH A 23 29 29 HOH WAT . J 6 HOH A 24 32 32 HOH WAT . J 6 HOH A 25 33 33 HOH WAT . J 6 HOH A 26 34 34 HOH WAT . J 6 HOH A 27 38 38 HOH WAT . J 6 HOH A 28 39 39 HOH WAT . J 6 HOH A 29 40 40 HOH WAT . J 6 HOH A 30 41 41 HOH WAT . J 6 HOH A 31 42 42 HOH WAT . J 6 HOH A 32 45 45 HOH WAT . J 6 HOH A 33 46 46 HOH WAT . J 6 HOH A 34 48 48 HOH WAT . J 6 HOH A 35 50 50 HOH WAT . J 6 HOH A 36 54 54 HOH WAT . J 6 HOH A 37 55 55 HOH WAT . J 6 HOH A 38 56 56 HOH WAT . J 6 HOH A 39 57 57 HOH WAT . J 6 HOH A 40 58 58 HOH WAT . J 6 HOH A 41 61 61 HOH WAT . J 6 HOH A 42 681 63 HOH WAT . J 6 HOH A 43 682 64 HOH WAT . J 6 HOH A 44 683 65 HOH WAT . J 6 HOH A 45 684 66 HOH WAT . J 6 HOH A 46 685 67 HOH WAT . J 6 HOH A 47 686 68 HOH WAT . J 6 HOH A 48 687 69 HOH WAT . J 6 HOH A 49 688 70 HOH WAT . J 6 HOH A 50 689 71 HOH WAT . J 6 HOH A 51 690 72 HOH WAT . J 6 HOH A 52 691 73 HOH WAT . J 6 HOH A 53 692 74 HOH WAT . J 6 HOH A 54 693 75 HOH WAT . J 6 HOH A 55 694 78 HOH WAT . J 6 HOH A 56 695 79 HOH WAT . J 6 HOH A 57 696 80 HOH WAT . J 6 HOH A 58 697 82 HOH WAT . J 6 HOH A 59 698 83 HOH WAT . J 6 HOH A 60 699 85 HOH WAT . J 6 HOH A 61 700 86 HOH WAT . J 6 HOH A 62 701 87 HOH WAT . J 6 HOH A 63 702 88 HOH WAT . J 6 HOH A 64 703 90 HOH WAT . J 6 HOH A 65 704 91 HOH WAT . J 6 HOH A 66 705 93 HOH WAT . J 6 HOH A 67 706 94 HOH WAT . J 6 HOH A 68 707 95 HOH WAT . J 6 HOH A 69 708 96 HOH WAT . J 6 HOH A 70 709 97 HOH WAT . J 6 HOH A 71 710 98 HOH WAT . J 6 HOH A 72 711 99 HOH WAT . K 6 HOH B 1 1 1 HOH WAT . K 6 HOH B 2 4 4 HOH WAT . K 6 HOH B 3 17 17 HOH WAT . K 6 HOH B 4 19 19 HOH WAT . K 6 HOH B 5 20 20 HOH WAT . K 6 HOH B 6 24 24 HOH WAT . K 6 HOH B 7 30 30 HOH WAT . K 6 HOH B 8 31 31 HOH WAT . K 6 HOH B 9 35 35 HOH WAT . K 6 HOH B 10 36 36 HOH WAT . K 6 HOH B 11 37 37 HOH WAT . K 6 HOH B 12 43 43 HOH WAT . K 6 HOH B 13 44 44 HOH WAT . K 6 HOH B 14 47 47 HOH WAT . K 6 HOH B 15 49 49 HOH WAT . K 6 HOH B 16 51 51 HOH WAT . K 6 HOH B 17 52 52 HOH WAT . K 6 HOH B 18 53 53 HOH WAT . K 6 HOH B 19 59 59 HOH WAT . K 6 HOH B 20 60 60 HOH WAT . K 6 HOH B 21 62 62 HOH WAT . K 6 HOH B 22 681 76 HOH WAT . K 6 HOH B 23 682 77 HOH WAT . K 6 HOH B 24 683 81 HOH WAT . K 6 HOH B 25 684 84 HOH WAT . K 6 HOH B 26 685 89 HOH WAT . K 6 HOH B 27 686 92 HOH WAT . K 6 HOH B 28 687 100 HOH WAT . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 FMN . . . D 3 9.943 -10.569 6.062 1 47.91 ? N1 FMN 751 A 1 HETATM 2 C C2 FMN . . . D 3 9.192 -11.575 6.583 1 47.36 ? C2 FMN 751 A 1 HETATM 3 O O2 FMN . . . D 3 9.098 -11.706 7.785 1 45.41 ? O2 FMN 751 A 1 HETATM 4 N N3 FMN . . . D 3 8.555 -12.421 5.735 1 45.99 ? N3 FMN 751 A 1 HETATM 5 C C4 FMN . . . D 3 8.595 -12.351 4.347 1 47.18 ? C4 FMN 751 A 1 HETATM 6 O O4 FMN . . . D 3 7.944 -13.229 3.785 1 50.48 ? O4 FMN 751 A 1 HETATM 7 C C4A FMN . . . D 3 9.374 -11.288 3.754 1 46.68 ? C4A FMN 751 A 1 HETATM 8 N N5 FMN . . . D 3 9.423 -11.189 2.346 1 46.8 ? N5 FMN 751 A 1 HETATM 9 C C5A FMN . . . D 3 10.186 -10.149 1.855 1 47.45 ? C5A FMN 751 A 1 HETATM 10 C C6 FMN . . . D 3 10.234 -10.039 0.412 1 49.16 ? C6 FMN 751 A 1 HETATM 11 C C7 FMN . . . D 3 10.981 -9.024 -0.227 1 49.74 ? C7 FMN 751 A 1 HETATM 12 C C7M FMN . . . D 3 10.951 -9.026 -1.768 1 49.53 ? C7M FMN 751 A 1 HETATM 13 C C8 FMN . . . D 3 11.746 -8.028 0.593 1 50.98 ? C8 FMN 751 A 1 HETATM 14 C C8M FMN . . . D 3 12.603 -6.874 0.029 1 50.91 ? C8M FMN 751 A 1 HETATM 15 C C9 FMN . . . D 3 11.706 -8.124 1.967 1 49.92 ? C9 FMN 751 A 1 HETATM 16 C C9A FMN . . . D 3 10.94 -9.167 2.65 1 50.04 ? C9A FMN 751 A 1 HETATM 17 N N10 FMN . . . D 3 10.855 -9.328 4.123 1 51.44 ? N10 FMN 751 A 1 HETATM 18 C C10 FMN . . . D 3 10.033 -10.426 4.701 1 48.3 ? C10 FMN 751 A 1 HETATM 19 C C1' FMN . . . D 3 11.582 -8.406 4.964 1 52.54 ? C1' FMN 751 A 1 HETATM 20 C C2' FMN . . . D 3 13.073 -8.868 5.198 1 53.45 ? C2' FMN 751 A 1 HETATM 21 O O2' FMN . . . D 3 13.051 -10.228 5.745 1 52.84 ? O2' FMN 751 A 1 HETATM 22 C C3' FMN . . . D 3 13.85 -7.86 6.06 1 53.69 ? C3' FMN 751 A 1 HETATM 23 O O3' FMN . . . D 3 13.86 -6.602 5.336 1 52.31 ? O3' FMN 751 A 1 HETATM 24 C C4' FMN . . . D 3 15.321 -8.366 6.306 1 54.74 ? C4' FMN 751 A 1 HETATM 25 O O4' FMN . . . D 3 15.923 -7.3 7.138 1 54.59 ? O4' FMN 751 A 1 HETATM 26 C C5' FMN . . . D 3 16.165 -8.528 5.05 1 55.06 ? C5' FMN 751 A 1 HETATM 27 O O5' FMN . . . D 3 17.512 -9.045 5.354 1 55.55 ? O5' FMN 751 A 1 HETATM 28 P P FMN . . . D 3 18.775 -8.991 4.376 1 58.43 ? P FMN 751 A 1 HETATM 29 O O1P FMN . . . D 3 19.226 -7.583 4.197 1 59.13 ? O1P FMN 751 A 1 HETATM 30 O O2P FMN . . . D 3 18.488 -9.766 3.15 1 56.08 ? O2P FMN 751 A 1 HETATM 31 O O3P FMN . . . D 3 19.83 -9.664 5.177 1 57.12 ? O3P FMN 751 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 11 _model_server_stats.query_time_ms 281 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 31 #