data_3QFR # _model_server_result.job_id hnPIALfeoG-S18BD3ZJ4nw _model_server_result.datetime_utc '2024-11-23 00:59:17' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3qfr # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":752}' # _entry.id 3QFR # _exptl.entry_id 3QFR _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 785.55 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FLAVIN-ADENINE DINUCLEOTIDE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3QFR _cell.length_a 70.276 _cell.length_b 120.393 _cell.length_c 156.345 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3QFR _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,J 1 1 B,G,H,I,K 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 G N N # _struct_conn.conn_type_id metalc _struct_conn.details ? _struct_conn.id metalc1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id OD1 _struct_conn.ptnr1_label_comp_id ASN _struct_conn.ptnr1_label_seq_id 533 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id ASN _struct_conn.ptnr1_auth_seq_id 595 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id F _struct_conn.ptnr2_label_atom_id CA _struct_conn.ptnr2_label_comp_id CA _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id CA _struct_conn.ptnr2_auth_seq_id 761 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.927 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C27 H33 N9 O15 P2' _chem_comp.formula_weight 785.55 _chem_comp.id FAD _chem_comp.mon_nstd_flag . _chem_comp.name 'FLAVIN-ADENINE DINUCLEOTIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A FAD doub 83 n n PA O2A FAD sing 84 n n PA O5B FAD sing 85 n n PA O3P FAD sing 86 n n O2A HOA2 FAD sing 87 n n O5B C5B FAD sing 88 n n C5B C4B FAD sing 89 n n C5B H51A FAD sing 90 n n C5B H52A FAD sing 91 n n C4B O4B FAD sing 92 n n C4B C3B FAD sing 93 n n C4B H4B FAD sing 94 n n O4B C1B FAD sing 95 n n C3B O3B FAD sing 96 n n C3B C2B FAD sing 97 n n C3B H3B FAD sing 98 n n O3B HO3A FAD sing 99 n n C2B O2B FAD sing 100 n n C2B C1B FAD sing 101 n n C2B H2B FAD sing 102 n n O2B HO2A FAD sing 103 n n C1B N9A FAD sing 104 n n C1B H1B FAD sing 105 n n N9A C8A FAD sing 106 n y N9A C4A FAD sing 107 n y C8A N7A FAD doub 108 n y C8A H8A FAD sing 109 n n N7A C5A FAD sing 110 n y C5A C6A FAD sing 111 n y C5A C4A FAD doub 112 n y C6A N6A FAD sing 113 n n C6A N1A FAD doub 114 n y N6A H61A FAD sing 115 n n N6A H62A FAD sing 116 n n N1A C2A FAD sing 117 n y C2A N3A FAD doub 118 n y C2A H2A FAD sing 119 n n N3A C4A FAD sing 120 n y N1 C2 FAD sing 121 n n N1 C10 FAD doub 122 n n C2 O2 FAD doub 123 n n C2 N3 FAD sing 124 n n N3 C4 FAD sing 125 n n N3 HN3 FAD sing 126 n n C4 O4 FAD doub 127 n n C4 C4X FAD sing 128 n n C4X N5 FAD doub 129 n n C4X C10 FAD sing 130 n n N5 C5X FAD sing 131 n n C5X C6 FAD doub 132 n y C5X C9A FAD sing 133 n y C6 C7 FAD sing 134 n y C6 H6 FAD sing 135 n n C7 C7M FAD sing 136 n n C7 C8 FAD doub 137 n y C7M HM71 FAD sing 138 n n C7M HM72 FAD sing 139 n n C7M HM73 FAD sing 140 n n C8 C8M FAD sing 141 n n C8 C9 FAD sing 142 n y C8M HM81 FAD sing 143 n n C8M HM82 FAD sing 144 n n C8M HM83 FAD sing 145 n n C9 C9A FAD doub 146 n y C9 H9 FAD sing 147 n n C9A N10 FAD sing 148 n n N10 C10 FAD sing 149 n n N10 C1' FAD sing 150 n n C1' C2' FAD sing 151 n n C1' "H1'1" FAD sing 152 n n C1' "H1'2" FAD sing 153 n n C2' O2' FAD sing 154 n n C2' C3' FAD sing 155 n n C2' H2' FAD sing 156 n n O2' HO2' FAD sing 157 n n C3' O3' FAD sing 158 n n C3' C4' FAD sing 159 n n C3' H3' FAD sing 160 n n O3' HO3' FAD sing 161 n n C4' O4' FAD sing 162 n n C4' C5' FAD sing 163 n n C4' H4' FAD sing 164 n n O4' HO4' FAD sing 165 n n C5' O5' FAD sing 166 n n C5' "H5'1" FAD sing 167 n n C5' "H5'2" FAD sing 168 n n O5' P FAD sing 169 n n P O1P FAD doub 170 n n P O2P FAD sing 171 n n P O3P FAD sing 172 n n O2P HOP2 FAD sing 173 n n # _atom_sites.entry_id 3QFR _atom_sites.fract_transf_matrix[1][1] 0.01423 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008306 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006396 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 FAD A 1 752 752 FAD FAD . D 3 FMN A 1 751 751 FMN FMN . E 4 NAP A 1 753 753 NAP NAP . F 5 CA A 1 761 761 CA CA . G 2 FAD B 1 752 752 FAD FAD . H 3 FMN B 1 751 751 FMN FMN . I 4 NAP B 1 753 753 NAP NAP . J 6 HOH A 1 2 2 HOH WAT . J 6 HOH A 2 3 3 HOH WAT . J 6 HOH A 3 5 5 HOH WAT . J 6 HOH A 4 6 6 HOH WAT . J 6 HOH A 5 7 7 HOH WAT . J 6 HOH A 6 8 8 HOH WAT . J 6 HOH A 7 9 9 HOH WAT . J 6 HOH A 8 10 10 HOH WAT . J 6 HOH A 9 11 11 HOH WAT . J 6 HOH A 10 12 12 HOH WAT . J 6 HOH A 11 13 13 HOH WAT . J 6 HOH A 12 14 14 HOH WAT . J 6 HOH A 13 15 15 HOH WAT . J 6 HOH A 14 16 16 HOH WAT . J 6 HOH A 15 18 18 HOH WAT . J 6 HOH A 16 21 21 HOH WAT . J 6 HOH A 17 22 22 HOH WAT . J 6 HOH A 18 23 23 HOH WAT . J 6 HOH A 19 25 25 HOH WAT . J 6 HOH A 20 26 26 HOH WAT . J 6 HOH A 21 27 27 HOH WAT . J 6 HOH A 22 28 28 HOH WAT . J 6 HOH A 23 29 29 HOH WAT . J 6 HOH A 24 32 32 HOH WAT . J 6 HOH A 25 33 33 HOH WAT . J 6 HOH A 26 34 34 HOH WAT . J 6 HOH A 27 38 38 HOH WAT . J 6 HOH A 28 39 39 HOH WAT . J 6 HOH A 29 40 40 HOH WAT . J 6 HOH A 30 41 41 HOH WAT . J 6 HOH A 31 42 42 HOH WAT . J 6 HOH A 32 45 45 HOH WAT . J 6 HOH A 33 46 46 HOH WAT . J 6 HOH A 34 48 48 HOH WAT . J 6 HOH A 35 50 50 HOH WAT . J 6 HOH A 36 54 54 HOH WAT . J 6 HOH A 37 55 55 HOH WAT . J 6 HOH A 38 56 56 HOH WAT . J 6 HOH A 39 57 57 HOH WAT . J 6 HOH A 40 58 58 HOH WAT . J 6 HOH A 41 61 61 HOH WAT . J 6 HOH A 42 681 63 HOH WAT . J 6 HOH A 43 682 64 HOH WAT . J 6 HOH A 44 683 65 HOH WAT . J 6 HOH A 45 684 66 HOH WAT . J 6 HOH A 46 685 67 HOH WAT . J 6 HOH A 47 686 68 HOH WAT . J 6 HOH A 48 687 69 HOH WAT . J 6 HOH A 49 688 70 HOH WAT . J 6 HOH A 50 689 71 HOH WAT . J 6 HOH A 51 690 72 HOH WAT . J 6 HOH A 52 691 73 HOH WAT . J 6 HOH A 53 692 74 HOH WAT . J 6 HOH A 54 693 75 HOH WAT . J 6 HOH A 55 694 78 HOH WAT . J 6 HOH A 56 695 79 HOH WAT . J 6 HOH A 57 696 80 HOH WAT . J 6 HOH A 58 697 82 HOH WAT . J 6 HOH A 59 698 83 HOH WAT . J 6 HOH A 60 699 85 HOH WAT . J 6 HOH A 61 700 86 HOH WAT . J 6 HOH A 62 701 87 HOH WAT . J 6 HOH A 63 702 88 HOH WAT . J 6 HOH A 64 703 90 HOH WAT . J 6 HOH A 65 704 91 HOH WAT . J 6 HOH A 66 705 93 HOH WAT . J 6 HOH A 67 706 94 HOH WAT . J 6 HOH A 68 707 95 HOH WAT . J 6 HOH A 69 708 96 HOH WAT . J 6 HOH A 70 709 97 HOH WAT . J 6 HOH A 71 710 98 HOH WAT . J 6 HOH A 72 711 99 HOH WAT . K 6 HOH B 1 1 1 HOH WAT . K 6 HOH B 2 4 4 HOH WAT . K 6 HOH B 3 17 17 HOH WAT . K 6 HOH B 4 19 19 HOH WAT . K 6 HOH B 5 20 20 HOH WAT . K 6 HOH B 6 24 24 HOH WAT . K 6 HOH B 7 30 30 HOH WAT . K 6 HOH B 8 31 31 HOH WAT . K 6 HOH B 9 35 35 HOH WAT . K 6 HOH B 10 36 36 HOH WAT . K 6 HOH B 11 37 37 HOH WAT . K 6 HOH B 12 43 43 HOH WAT . K 6 HOH B 13 44 44 HOH WAT . K 6 HOH B 14 47 47 HOH WAT . K 6 HOH B 15 49 49 HOH WAT . K 6 HOH B 16 51 51 HOH WAT . K 6 HOH B 17 52 52 HOH WAT . K 6 HOH B 18 53 53 HOH WAT . K 6 HOH B 19 59 59 HOH WAT . K 6 HOH B 20 60 60 HOH WAT . K 6 HOH B 21 62 62 HOH WAT . K 6 HOH B 22 681 76 HOH WAT . K 6 HOH B 23 682 77 HOH WAT . K 6 HOH B 24 683 81 HOH WAT . K 6 HOH B 25 684 84 HOH WAT . K 6 HOH B 26 685 89 HOH WAT . K 6 HOH B 27 686 92 HOH WAT . K 6 HOH B 28 687 100 HOH WAT . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA FAD . . . C 2 16.119 5.212 -0.331 1 53.46 ? PA FAD 752 A 1 HETATM 2 O O1A FAD . . . C 2 17.301 6.12 -0.443 1 52.61 ? O1A FAD 752 A 1 HETATM 3 O O2A FAD . . . C 2 16.459 3.764 -0.26 1 51.77 ? O2A FAD 752 A 1 HETATM 4 O O5B FAD . . . C 2 15.367 5.613 0.904 1 51.18 ? O5B FAD 752 A 1 HETATM 5 C C5B FAD . . . C 2 14.146 4.945 1.325 1 54.66 ? C5B FAD 752 A 1 HETATM 6 C C4B FAD . . . C 2 13.824 5.091 2.809 1 57.76 ? C4B FAD 752 A 1 HETATM 7 O O4B FAD . . . C 2 13.578 6.481 3.108 1 58.28 ? O4B FAD 752 A 1 HETATM 8 C C3B FAD . . . C 2 12.55 4.357 3.268 1 59.5 ? C3B FAD 752 A 1 HETATM 9 O O3B FAD . . . C 2 12.859 3.051 3.766 1 63.38 ? O3B FAD 752 A 1 HETATM 10 C C2B FAD . . . C 2 12.024 5.166 4.441 1 58.93 ? C2B FAD 752 A 1 HETATM 11 O O2B FAD . . . C 2 12.45 4.71 5.766 1 58.82 ? O2B FAD 752 A 1 HETATM 12 C C1B FAD . . . C 2 12.533 6.595 4.101 1 59.01 ? C1B FAD 752 A 1 HETATM 13 N N9A FAD . . . C 2 11.498 7.588 3.666 1 60.11 ? N9A FAD 752 A 1 HETATM 14 C C8A FAD . . . C 2 10.798 7.816 2.476 1 59.17 ? C8A FAD 752 A 1 HETATM 15 N N7A FAD . . . C 2 9.907 8.884 2.527 1 59.58 ? N7A FAD 752 A 1 HETATM 16 C C5A FAD . . . C 2 10.063 9.347 3.822 1 59.68 ? C5A FAD 752 A 1 HETATM 17 C C6A FAD . . . C 2 9.469 10.431 4.598 1 60.7 ? C6A FAD 752 A 1 HETATM 18 N N6A FAD . . . C 2 8.525 11.283 4.087 1 60.61 ? N6A FAD 752 A 1 HETATM 19 N N1A FAD . . . C 2 9.928 10.547 5.912 1 61.17 ? N1A FAD 752 A 1 HETATM 20 C C2A FAD . . . C 2 10.858 9.774 6.547 1 61.59 ? C2A FAD 752 A 1 HETATM 21 N N3A FAD . . . C 2 11.486 8.727 5.92 1 59.6 ? N3A FAD 752 A 1 HETATM 22 C C4A FAD . . . C 2 11.046 8.557 4.546 1 60.05 ? C4A FAD 752 A 1 HETATM 23 N N1 FAD . . . C 2 9.14 1.604 -5.774 1 40.02 ? N1 FAD 752 A 1 HETATM 24 C C2 FAD . . . C 2 8.513 2.208 -6.819 1 40.29 ? C2 FAD 752 A 1 HETATM 25 O O2 FAD . . . C 2 8.461 3.426 -6.845 1 42.01 ? O2 FAD 752 A 1 HETATM 26 N N3 FAD . . . C 2 7.983 1.4 -7.77 1 41.52 ? N3 FAD 752 A 1 HETATM 27 C C4 FAD . . . C 2 7.98 -0.034 -7.827 1 41.91 ? C4 FAD 752 A 1 HETATM 28 O O4 FAD . . . C 2 7.432 -0.628 -8.796 1 42 ? O4 FAD 752 A 1 HETATM 29 C C4X FAD . . . C 2 8.65 -0.667 -6.686 1 39.5 ? C4X FAD 752 A 1 HETATM 30 N N5 FAD . . . C 2 8.679 -2.065 -6.661 1 39.46 ? N5 FAD 752 A 1 HETATM 31 C C5X FAD . . . C 2 9.328 -2.646 -5.569 1 37.91 ? C5X FAD 752 A 1 HETATM 32 C C6 FAD . . . C 2 9.369 -4.106 -5.52 1 39.74 ? C6 FAD 752 A 1 HETATM 33 C C7 FAD . . . C 2 10.006 -4.826 -4.464 1 39.2 ? C7 FAD 752 A 1 HETATM 34 C C7M FAD . . . C 2 10.025 -6.36 -4.458 1 38.85 ? C7M FAD 752 A 1 HETATM 35 C C8 FAD . . . C 2 10.642 -4.026 -3.394 1 41.26 ? C8 FAD 752 A 1 HETATM 36 C C8M FAD . . . C 2 11.364 -4.662 -2.217 1 42.64 ? C8M FAD 752 A 1 HETATM 37 C C9 FAD . . . C 2 10.617 -2.625 -3.406 1 39.89 ? C9 FAD 752 A 1 HETATM 38 C C9A FAD . . . C 2 9.974 -1.894 -4.467 1 39.48 ? C9A FAD 752 A 1 HETATM 39 N N10 FAD . . . C 2 9.889 -0.393 -4.574 1 40.03 ? N10 FAD 752 A 1 HETATM 40 C C10 FAD . . . C 2 9.233 0.21 -5.665 1 39.62 ? C10 FAD 752 A 1 HETATM 41 C C1' FAD . . . C 2 10.471 0.557 -3.576 1 38.24 ? C1' FAD 752 A 1 HETATM 42 C C2' FAD . . . C 2 11.89 0.71 -4.31 1 41.42 ? C2' FAD 752 A 1 HETATM 43 O O2' FAD . . . C 2 12.735 -0.505 -4.379 1 42.53 ? O2' FAD 752 A 1 HETATM 44 C C3' FAD . . . C 2 12.7 1.776 -3.428 1 42.22 ? C3' FAD 752 A 1 HETATM 45 O O3' FAD . . . C 2 12.614 1.537 -1.979 1 43.66 ? O3' FAD 752 A 1 HETATM 46 C C4' FAD . . . C 2 12.214 3.218 -3.632 1 41.78 ? C4' FAD 752 A 1 HETATM 47 O O4' FAD . . . C 2 12.29 3.486 -5.065 1 41.25 ? O4' FAD 752 A 1 HETATM 48 C C5' FAD . . . C 2 12.973 4.188 -2.9 1 42.33 ? C5' FAD 752 A 1 HETATM 49 O O5' FAD . . . C 2 14.377 4.096 -3.088 1 44.43 ? O5' FAD 752 A 1 HETATM 50 P P FAD . . . C 2 15.347 5.2 -2.905 1 45.82 ? P FAD 752 A 1 HETATM 51 O O1P FAD . . . C 2 15.063 6.408 -3.741 1 45.99 ? O1P FAD 752 A 1 HETATM 52 O O2P FAD . . . C 2 16.688 4.598 -3.196 1 48.1 ? O2P FAD 752 A 1 HETATM 53 O O3P FAD . . . C 2 15.102 5.502 -1.397 1 49.84 ? O3P FAD 752 A 1 # _model_server_stats.io_time_ms 23 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 17 _model_server_stats.query_time_ms 320 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 53 #