data_3QFR # _model_server_result.job_id L7xQJ46zY38FHj6499BSwA _model_server_result.datetime_utc '2024-11-23 00:46:45' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3qfr # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":753}' # _entry.id 3QFR # _exptl.entry_id 3QFR _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 743.405 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3QFR _cell.length_a 70.276 _cell.length_b 120.393 _cell.length_c 156.345 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3QFR _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,J 1 1 B,G,H,I,K 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 E N N ? 4 I N N # _struct_conn.conn_type_id metalc _struct_conn.details ? _struct_conn.id metalc1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id OD1 _struct_conn.ptnr1_label_comp_id ASN _struct_conn.ptnr1_label_seq_id 533 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id ASN _struct_conn.ptnr1_auth_seq_id 595 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id F _struct_conn.ptnr2_label_atom_id CA _struct_conn.ptnr2_label_comp_id CA _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id CA _struct_conn.ptnr2_auth_seq_id 761 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.927 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C21 H28 N7 O17 P3' _chem_comp.formula_weight 743.405 _chem_comp.id NAP _chem_comp.mon_nstd_flag . _chem_comp.name 'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms "2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE" # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NAP doub 382 n n PA O2A NAP sing 383 n n PA O5B NAP sing 384 n n PA O3 NAP sing 385 n n O2A HOA2 NAP sing 386 n n O5B C5B NAP sing 387 n n C5B C4B NAP sing 388 n n C5B H51A NAP sing 389 n n C5B H52A NAP sing 390 n n C4B O4B NAP sing 391 n n C4B C3B NAP sing 392 n n C4B H4B NAP sing 393 n n O4B C1B NAP sing 394 n n C3B O3B NAP sing 395 n n C3B C2B NAP sing 396 n n C3B H3B NAP sing 397 n n O3B HO3A NAP sing 398 n n C2B O2B NAP sing 399 n n C2B C1B NAP sing 400 n n C2B H2B NAP sing 401 n n O2B P2B NAP sing 402 n n C1B N9A NAP sing 403 n n C1B H1B NAP sing 404 n n N9A C8A NAP sing 405 n y N9A C4A NAP sing 406 n y C8A N7A NAP doub 407 n y C8A H8A NAP sing 408 n n N7A C5A NAP sing 409 n y C5A C6A NAP sing 410 n y C5A C4A NAP doub 411 n y C6A N6A NAP sing 412 n n C6A N1A NAP doub 413 n y N6A H61A NAP sing 414 n n N6A H62A NAP sing 415 n n N1A C2A NAP sing 416 n y C2A N3A NAP doub 417 n y C2A H2A NAP sing 418 n n N3A C4A NAP sing 419 n y O3 PN NAP sing 420 n n PN O1N NAP doub 421 n n PN O2N NAP sing 422 n n PN O5D NAP sing 423 n n O5D C5D NAP sing 424 n n C5D C4D NAP sing 425 n n C5D H51N NAP sing 426 n n C5D H52N NAP sing 427 n n C4D O4D NAP sing 428 n n C4D C3D NAP sing 429 n n C4D H4D NAP sing 430 n n O4D C1D NAP sing 431 n n C3D O3D NAP sing 432 n n C3D C2D NAP sing 433 n n C3D H3D NAP sing 434 n n O3D HO3N NAP sing 435 n n C2D O2D NAP sing 436 n n C2D C1D NAP sing 437 n n C2D H2D NAP sing 438 n n O2D HO2N NAP sing 439 n n C1D N1N NAP sing 440 n n C1D H1D NAP sing 441 n n N1N C2N NAP sing 442 n y N1N C6N NAP doub 443 n y C2N C3N NAP doub 444 n y C2N H2N NAP sing 445 n n C3N C7N NAP sing 446 n n C3N C4N NAP sing 447 n y C7N O7N NAP doub 448 n n C7N N7N NAP sing 449 n n N7N H71N NAP sing 450 n n N7N H72N NAP sing 451 n n C4N C5N NAP doub 452 n y C4N H4N NAP sing 453 n n C5N C6N NAP sing 454 n y C5N H5N NAP sing 455 n n C6N H6N NAP sing 456 n n P2B O1X NAP doub 457 n n P2B O2X NAP sing 458 n n P2B O3X NAP sing 459 n n O2X HOP2 NAP sing 460 n n O3X HOP3 NAP sing 461 n n # _atom_sites.entry_id 3QFR _atom_sites.fract_transf_matrix[1][1] 0.01423 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008306 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006396 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 FAD A 1 752 752 FAD FAD . D 3 FMN A 1 751 751 FMN FMN . E 4 NAP A 1 753 753 NAP NAP . F 5 CA A 1 761 761 CA CA . G 2 FAD B 1 752 752 FAD FAD . H 3 FMN B 1 751 751 FMN FMN . I 4 NAP B 1 753 753 NAP NAP . J 6 HOH A 1 2 2 HOH WAT . J 6 HOH A 2 3 3 HOH WAT . J 6 HOH A 3 5 5 HOH WAT . J 6 HOH A 4 6 6 HOH WAT . J 6 HOH A 5 7 7 HOH WAT . J 6 HOH A 6 8 8 HOH WAT . J 6 HOH A 7 9 9 HOH WAT . J 6 HOH A 8 10 10 HOH WAT . J 6 HOH A 9 11 11 HOH WAT . J 6 HOH A 10 12 12 HOH WAT . J 6 HOH A 11 13 13 HOH WAT . J 6 HOH A 12 14 14 HOH WAT . J 6 HOH A 13 15 15 HOH WAT . J 6 HOH A 14 16 16 HOH WAT . J 6 HOH A 15 18 18 HOH WAT . J 6 HOH A 16 21 21 HOH WAT . J 6 HOH A 17 22 22 HOH WAT . J 6 HOH A 18 23 23 HOH WAT . J 6 HOH A 19 25 25 HOH WAT . J 6 HOH A 20 26 26 HOH WAT . J 6 HOH A 21 27 27 HOH WAT . J 6 HOH A 22 28 28 HOH WAT . J 6 HOH A 23 29 29 HOH WAT . J 6 HOH A 24 32 32 HOH WAT . J 6 HOH A 25 33 33 HOH WAT . J 6 HOH A 26 34 34 HOH WAT . J 6 HOH A 27 38 38 HOH WAT . J 6 HOH A 28 39 39 HOH WAT . J 6 HOH A 29 40 40 HOH WAT . J 6 HOH A 30 41 41 HOH WAT . J 6 HOH A 31 42 42 HOH WAT . J 6 HOH A 32 45 45 HOH WAT . J 6 HOH A 33 46 46 HOH WAT . J 6 HOH A 34 48 48 HOH WAT . J 6 HOH A 35 50 50 HOH WAT . J 6 HOH A 36 54 54 HOH WAT . J 6 HOH A 37 55 55 HOH WAT . J 6 HOH A 38 56 56 HOH WAT . J 6 HOH A 39 57 57 HOH WAT . J 6 HOH A 40 58 58 HOH WAT . J 6 HOH A 41 61 61 HOH WAT . J 6 HOH A 42 681 63 HOH WAT . J 6 HOH A 43 682 64 HOH WAT . J 6 HOH A 44 683 65 HOH WAT . J 6 HOH A 45 684 66 HOH WAT . J 6 HOH A 46 685 67 HOH WAT . J 6 HOH A 47 686 68 HOH WAT . J 6 HOH A 48 687 69 HOH WAT . J 6 HOH A 49 688 70 HOH WAT . J 6 HOH A 50 689 71 HOH WAT . J 6 HOH A 51 690 72 HOH WAT . J 6 HOH A 52 691 73 HOH WAT . J 6 HOH A 53 692 74 HOH WAT . J 6 HOH A 54 693 75 HOH WAT . J 6 HOH A 55 694 78 HOH WAT . J 6 HOH A 56 695 79 HOH WAT . J 6 HOH A 57 696 80 HOH WAT . J 6 HOH A 58 697 82 HOH WAT . J 6 HOH A 59 698 83 HOH WAT . J 6 HOH A 60 699 85 HOH WAT . J 6 HOH A 61 700 86 HOH WAT . J 6 HOH A 62 701 87 HOH WAT . J 6 HOH A 63 702 88 HOH WAT . J 6 HOH A 64 703 90 HOH WAT . J 6 HOH A 65 704 91 HOH WAT . J 6 HOH A 66 705 93 HOH WAT . J 6 HOH A 67 706 94 HOH WAT . J 6 HOH A 68 707 95 HOH WAT . J 6 HOH A 69 708 96 HOH WAT . J 6 HOH A 70 709 97 HOH WAT . J 6 HOH A 71 710 98 HOH WAT . J 6 HOH A 72 711 99 HOH WAT . K 6 HOH B 1 1 1 HOH WAT . K 6 HOH B 2 4 4 HOH WAT . K 6 HOH B 3 17 17 HOH WAT . K 6 HOH B 4 19 19 HOH WAT . K 6 HOH B 5 20 20 HOH WAT . K 6 HOH B 6 24 24 HOH WAT . K 6 HOH B 7 30 30 HOH WAT . K 6 HOH B 8 31 31 HOH WAT . K 6 HOH B 9 35 35 HOH WAT . K 6 HOH B 10 36 36 HOH WAT . K 6 HOH B 11 37 37 HOH WAT . K 6 HOH B 12 43 43 HOH WAT . K 6 HOH B 13 44 44 HOH WAT . K 6 HOH B 14 47 47 HOH WAT . K 6 HOH B 15 49 49 HOH WAT . K 6 HOH B 16 51 51 HOH WAT . K 6 HOH B 17 52 52 HOH WAT . K 6 HOH B 18 53 53 HOH WAT . K 6 HOH B 19 59 59 HOH WAT . K 6 HOH B 20 60 60 HOH WAT . K 6 HOH B 21 62 62 HOH WAT . K 6 HOH B 22 681 76 HOH WAT . K 6 HOH B 23 682 77 HOH WAT . K 6 HOH B 24 683 81 HOH WAT . K 6 HOH B 25 684 84 HOH WAT . K 6 HOH B 26 685 89 HOH WAT . K 6 HOH B 27 686 92 HOH WAT . K 6 HOH B 28 687 100 HOH WAT . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NAP . . . E 4 0.715 6.878 -2.812 1 102.46 ? PA NAP 753 A 1 HETATM 2 O O1A NAP . . . E 4 0.537 8.045 -3.74 1 102.99 ? O1A NAP 753 A 1 HETATM 3 O O2A NAP . . . E 4 1.372 7.224 -1.522 1 102.61 ? O2A NAP 753 A 1 HETATM 4 O O5B NAP . . . E 4 -0.639 6.335 -2.532 1 98.7 ? O5B NAP 753 A 1 HETATM 5 C C5B NAP . . . E 4 -1.528 5.726 -3.496 1 93.26 ? C5B NAP 753 A 1 HETATM 6 C C4B NAP . . . E 4 -2.977 5.748 -3.02 1 89.41 ? C4B NAP 753 A 1 HETATM 7 O O4B NAP . . . E 4 -3.094 4.863 -1.87 1 87.81 ? O4B NAP 753 A 1 HETATM 8 C C3B NAP . . . E 4 -3.453 7.136 -2.544 1 87.54 ? C3B NAP 753 A 1 HETATM 9 O O3B NAP . . . E 4 -4.695 7.528 -3.158 1 87.7 ? O3B NAP 753 A 1 HETATM 10 C C2B NAP . . . E 4 -3.561 6.972 -1.044 1 86.88 ? C2B NAP 753 A 1 HETATM 11 O O2B NAP . . . E 4 -4.438 7.909 -0.361 1 85.53 ? O2B NAP 753 A 1 HETATM 12 C C1B NAP . . . E 4 -3.982 5.494 -0.966 1 86.04 ? C1B NAP 753 A 1 HETATM 13 N N9A NAP . . . E 4 -3.876 4.912 0.296 1 84.1 ? N9A NAP 753 A 1 HETATM 14 C C8A NAP . . . E 4 -3.207 5.244 1.5 1 83.21 ? C8A NAP 753 A 1 HETATM 15 N N7A NAP . . . E 4 -3.291 4.466 2.63 1 83.07 ? N7A NAP 753 A 1 HETATM 16 C C5A NAP . . . E 4 -4.128 3.489 2.098 1 82.99 ? C5A NAP 753 A 1 HETATM 17 C C6A NAP . . . E 4 -4.699 2.278 2.701 1 82.82 ? C6A NAP 753 A 1 HETATM 18 N N6A NAP . . . E 4 -4.463 1.937 3.959 1 81.88 ? N6A NAP 753 A 1 HETATM 19 N N1A NAP . . . E 4 -5.498 1.459 1.977 1 83.25 ? N1A NAP 753 A 1 HETATM 20 C C2A NAP . . . E 4 -5.824 1.703 0.651 1 81.95 ? C2A NAP 753 A 1 HETATM 21 N N3A NAP . . . E 4 -5.383 2.781 -0.051 1 82.36 ? N3A NAP 753 A 1 HETATM 22 C C4A NAP . . . E 4 -4.487 3.742 0.684 1 83.16 ? C4A NAP 753 A 1 HETATM 23 O O3 NAP . . . E 4 1.36 5.724 -3.528 1 105.6 ? O3 NAP 753 A 1 HETATM 24 P PN NAP . . . E 4 2.849 5.746 -3.993 1 108.21 ? PN NAP 753 A 1 HETATM 25 O O1N NAP . . . E 4 3.55 5.423 -2.714 1 111.08 ? O1N NAP 753 A 1 HETATM 26 O O2N NAP . . . E 4 3.329 7.102 -4.399 1 107.7 ? O2N NAP 753 A 1 HETATM 27 O O5D NAP . . . E 4 3.058 4.718 -5.057 1 107.29 ? O5D NAP 753 A 1 HETATM 28 P P2B NAP . . . E 4 -3.944 9.07 0.68 1 85.5 ? P2B NAP 753 A 1 HETATM 29 O O1X NAP . . . E 4 -2.421 9.501 0.346 1 84.66 ? O1X NAP 753 A 1 HETATM 30 O O2X NAP . . . E 4 -4.033 8.518 2.176 1 85.22 ? O2X NAP 753 A 1 HETATM 31 O O3X NAP . . . E 4 -4.923 10.325 0.484 1 85.26 ? O3X NAP 753 A 1 # _model_server_stats.io_time_ms 75 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 320 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 31 #