data_3QFV # _model_server_result.job_id yeWsxHrpa3AwBp59zfDTMQ _model_server_result.datetime_utc '2024-10-13 02:24:14' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3qfv # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":421}' # _entry.id 3QFV # _exptl.entry_id 3QFV _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 100.69 _cell.angle_gamma 90 _cell.entry_id 3QFV _cell.length_a 44.81 _cell.length_b 123.36 _cell.length_c 85.49 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3QFV _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 I N N ? 3 J N N # _struct_conn.conn_type_id metalc _struct_conn.details ? _struct_conn.id metalc1 _struct_conn.ptnr1_label_asym_id B _struct_conn.ptnr1_label_atom_id O _struct_conn.ptnr1_label_comp_id HIS _struct_conn.ptnr1_label_seq_id 198 _struct_conn.ptnr1_auth_asym_id B _struct_conn.ptnr1_auth_comp_id HIS _struct_conn.ptnr1_auth_seq_id 198 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id H _struct_conn.ptnr2_label_atom_id MG _struct_conn.ptnr2_label_comp_id MG _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id B _struct_conn.ptnr2_auth_comp_id MG _struct_conn.ptnr2_auth_seq_id 419 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.575 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 83 n n C1 C2 EDO sing 84 n n C1 H11 EDO sing 85 n n C1 H12 EDO sing 86 n n O1 HO1 EDO sing 87 n n C2 O2 EDO sing 88 n n C2 H21 EDO sing 89 n n C2 H22 EDO sing 90 n n O2 HO2 EDO sing 91 n n # _atom_sites.entry_id 3QFV _atom_sites.fract_transf_matrix[1][1] 0.022316 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.004213 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008106 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011904 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NM7 A 1 416 2 NM7 NM7 . D 3 EDO A 1 417 2 EDO EDO . E 2 NM7 B 1 416 1 NM7 NM7 . F 4 CL B 1 417 1 CL CL . G 4 CL B 1 418 2 CL CL . H 5 MG B 1 419 3 MG MG . I 3 EDO B 1 420 1 EDO EDO . J 3 EDO B 1 421 3 EDO EDO . K 6 HOH A 1 418 6 HOH HOH . K 6 HOH A 2 419 7 HOH HOH . K 6 HOH A 3 420 12 HOH HOH . K 6 HOH A 4 421 15 HOH HOH . K 6 HOH A 5 422 18 HOH HOH . K 6 HOH A 6 423 21 HOH HOH . K 6 HOH A 7 424 28 HOH HOH . K 6 HOH A 8 425 29 HOH HOH . K 6 HOH A 9 426 31 HOH HOH . K 6 HOH A 10 427 40 HOH HOH . K 6 HOH A 11 428 45 HOH HOH . K 6 HOH A 12 429 50 HOH HOH . K 6 HOH A 13 430 51 HOH HOH . K 6 HOH A 14 431 77 HOH HOH . K 6 HOH A 15 432 87 HOH HOH . K 6 HOH A 16 433 121 HOH HOH . K 6 HOH A 17 434 122 HOH HOH . K 6 HOH A 18 435 157 HOH HOH . K 6 HOH A 19 436 165 HOH HOH . K 6 HOH A 20 437 173 HOH HOH . K 6 HOH A 21 438 193 HOH HOH . K 6 HOH A 22 439 202 HOH HOH . K 6 HOH A 23 440 208 HOH HOH . K 6 HOH A 24 441 252 HOH HOH . K 6 HOH A 25 442 266 HOH HOH . K 6 HOH A 26 443 267 HOH HOH . K 6 HOH A 27 444 284 HOH HOH . K 6 HOH A 28 445 291 HOH HOH . K 6 HOH A 29 446 294 HOH HOH . K 6 HOH A 30 447 295 HOH HOH . K 6 HOH A 31 448 296 HOH HOH . K 6 HOH A 32 449 297 HOH HOH . K 6 HOH A 33 450 302 HOH HOH . K 6 HOH A 34 451 304 HOH HOH . K 6 HOH A 35 452 305 HOH HOH . K 6 HOH A 36 453 308 HOH HOH . K 6 HOH A 37 454 309 HOH HOH . K 6 HOH A 38 455 315 HOH HOH . K 6 HOH A 39 456 318 HOH HOH . K 6 HOH A 40 457 319 HOH HOH . K 6 HOH A 41 458 320 HOH HOH . K 6 HOH A 42 459 321 HOH HOH . K 6 HOH A 43 460 324 HOH HOH . K 6 HOH A 44 461 325 HOH HOH . K 6 HOH A 45 462 330 HOH HOH . K 6 HOH A 46 463 332 HOH HOH . K 6 HOH A 47 464 333 HOH HOH . K 6 HOH A 48 465 334 HOH HOH . K 6 HOH A 49 466 342 HOH HOH . K 6 HOH A 50 467 343 HOH HOH . K 6 HOH A 51 468 347 HOH HOH . K 6 HOH A 52 469 349 HOH HOH . K 6 HOH A 53 470 351 HOH HOH . L 6 HOH B 1 422 3 HOH HOH . L 6 HOH B 2 423 26 HOH HOH . L 6 HOH B 3 424 33 HOH HOH . L 6 HOH B 4 425 36 HOH HOH . L 6 HOH B 5 426 38 HOH HOH . L 6 HOH B 6 427 54 HOH HOH . L 6 HOH B 7 428 65 HOH HOH . L 6 HOH B 8 429 81 HOH HOH . L 6 HOH B 9 430 98 HOH HOH . L 6 HOH B 10 431 100 HOH HOH . L 6 HOH B 11 432 127 HOH HOH . L 6 HOH B 12 433 130 HOH HOH . L 6 HOH B 13 434 141 HOH HOH . L 6 HOH B 14 435 142 HOH HOH . L 6 HOH B 15 436 145 HOH HOH . L 6 HOH B 16 437 166 HOH HOH . L 6 HOH B 17 438 178 HOH HOH . L 6 HOH B 18 439 201 HOH HOH . L 6 HOH B 19 440 236 HOH HOH . L 6 HOH B 20 441 237 HOH HOH . L 6 HOH B 21 442 238 HOH HOH . L 6 HOH B 22 443 239 HOH HOH . L 6 HOH B 23 444 243 HOH HOH . L 6 HOH B 24 445 255 HOH HOH . L 6 HOH B 25 446 257 HOH HOH . L 6 HOH B 26 447 264 HOH HOH . L 6 HOH B 27 448 269 HOH HOH . L 6 HOH B 28 449 275 HOH HOH . L 6 HOH B 29 450 276 HOH HOH . L 6 HOH B 30 451 278 HOH HOH . L 6 HOH B 31 452 280 HOH HOH . L 6 HOH B 32 453 288 HOH HOH . L 6 HOH B 33 454 289 HOH HOH . L 6 HOH B 34 455 290 HOH HOH . L 6 HOH B 35 456 292 HOH HOH . L 6 HOH B 36 457 293 HOH HOH . L 6 HOH B 37 458 298 HOH HOH . L 6 HOH B 38 459 301 HOH HOH . L 6 HOH B 39 460 307 HOH HOH . L 6 HOH B 40 461 310 HOH HOH . L 6 HOH B 41 462 311 HOH HOH . L 6 HOH B 42 463 312 HOH HOH . L 6 HOH B 43 464 313 HOH HOH . L 6 HOH B 44 465 314 HOH HOH . L 6 HOH B 45 466 316 HOH HOH . L 6 HOH B 46 467 322 HOH HOH . L 6 HOH B 47 468 323 HOH HOH . L 6 HOH B 48 469 326 HOH HOH . L 6 HOH B 49 470 327 HOH HOH . L 6 HOH B 50 471 329 HOH HOH . L 6 HOH B 51 472 331 HOH HOH . L 6 HOH B 52 473 335 HOH HOH . L 6 HOH B 53 474 336 HOH HOH . L 6 HOH B 54 475 337 HOH HOH . L 6 HOH B 55 476 338 HOH HOH . L 6 HOH B 56 477 339 HOH HOH . L 6 HOH B 57 478 340 HOH HOH . L 6 HOH B 58 479 341 HOH HOH . L 6 HOH B 59 480 344 HOH HOH . L 6 HOH B 60 481 345 HOH HOH . L 6 HOH B 61 482 346 HOH HOH . L 6 HOH B 62 483 348 HOH HOH . L 6 HOH B 63 484 350 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . J 3 6.38 -17.024 27.518 1 33.96 ? C1 EDO 421 B 1 HETATM 2 O O1 EDO . . . J 3 5.4 -16.303 28.272 1 33.71 ? O1 EDO 421 B 1 HETATM 3 C C2 EDO . . . J 3 7.038 -16.143 26.468 1 34.31 ? C2 EDO 421 B 1 HETATM 4 O O2 EDO . . . J 3 7.185 -14.781 26.914 1 38.94 ? O2 EDO 421 B 1 # _model_server_stats.io_time_ms 75 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 287 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 4 #