data_3QG5 # _model_server_result.job_id O-FZopie3hJdmOliLV-L8Q _model_server_result.datetime_utc '2025-03-04 07:22:30' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3qg5 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":3968}' # _entry.id 3QG5 # _exptl.entry_id 3QG5 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3QG5 _cell.length_a 105.19 _cell.length_b 187 _cell.length_c 300.17 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3QG5 _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 2 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C MSE 1 A MSE 1 1_555 A N ARG 2 A ARG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale2 A C LYS 180 A LYS 180 1_555 A N MSE 181 A MSE 181 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale3 A C MSE 181 A MSE 181 1_555 A N LYS 182 A LYS 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale4 A C GLU 206 A GLU 693 1_555 A N MSE 207 A MSE 694 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale5 A C MSE 207 A MSE 694 1_555 A N SER 208 A SER 695 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale6 A C ALA 293 A ALA 780 1_555 A N MSE 294 A MSE 781 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale7 A C MSE 294 A MSE 781 1_555 A N SER 295 A SER 782 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale8 B C MSE 1 B MSE 1 1_555 B N ARG 2 B ARG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale9 B C LYS 180 B LYS 180 1_555 B N MSE 181 B MSE 181 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale10 B C MSE 181 B MSE 181 1_555 B N LYS 182 B LYS 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale11 B C GLU 206 B GLU 693 1_555 B N MSE 207 B MSE 694 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale12 B C MSE 207 B MSE 694 1_555 B N SER 208 B SER 695 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale13 B C ALA 293 B ALA 780 1_555 B N MSE 294 B MSE 781 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale14 B C MSE 294 B MSE 781 1_555 B N SER 295 B SER 782 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale15 C C MSE 1 C MSE 7 1_555 C N LYS 2 C LYS 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale16 C C ARG 74 C ARG 80 1_555 C N MSE 75 C MSE 81 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale17 C C MSE 75 C MSE 81 1_555 C N MSE 76 C MSE 82 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale18 C C MSE 76 C MSE 82 1_555 C N ARG 77 C ARG 83 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale19 C C VAL 110 C VAL 116 1_555 C N MSE 111 C MSE 117 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale20 C C MSE 111 C MSE 117 1_555 C N SER 112 C SER 118 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.322 ? covale ? covale21 C C PHE 171 C PHE 177 1_555 C N MSE 172 C MSE 178 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale22 C C MSE 172 C MSE 178 1_555 C N GLY 173 C GLY 179 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale23 C C LEU 307 C LEU 313 1_555 C N MSE 308 C MSE 314 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale24 C C MSE 308 C MSE 314 1_555 C N GLY 309 C GLY 315 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale25 D C MSE 1 D MSE 7 1_555 D N LYS 2 D LYS 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale26 D C ARG 74 D ARG 80 1_555 D N MSE 75 D MSE 81 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale27 D C MSE 75 D MSE 81 1_555 D N MSE 76 D MSE 82 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale28 D C MSE 76 D MSE 82 1_555 D N ARG 77 D ARG 83 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? covale ? covale29 D C VAL 110 D VAL 116 1_555 D N MSE 111 D MSE 117 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale30 D C MSE 111 D MSE 117 1_555 D N SER 112 D SER 118 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? covale ? covale31 D C PHE 171 D PHE 177 1_555 D N MSE 172 D MSE 178 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale32 D C MSE 172 D MSE 178 1_555 D N GLY 173 D GLY 179 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? covale ? covale33 D C LEU 307 D LEU 313 1_555 D N MSE 308 D MSE 314 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale34 D C MSE 308 D MSE 314 1_555 D N GLY 309 D GLY 315 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 3QG5 _atom_sites.fract_transf_matrix[1][1] 0.009507 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005348 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003331 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 GOL A 1 3968 3968 GOL GOL . F 3 GOL D 1 3968 3968 GOL GOL . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . E 3 18.682 -33.837 59.139 1 53.57 ? C1 GOL 3968 A 1 HETATM 2 O O1 GOL . . . E 3 17.47 -33.171 59.411 1 55.5 ? O1 GOL 3968 A 1 HETATM 3 C C2 GOL . . . E 3 18.481 -34.83 58.004 1 57.12 ? C2 GOL 3968 A 1 HETATM 4 O O2 GOL . . . E 3 18.222 -36.108 58.533 1 65.26 ? O2 GOL 3968 A 1 HETATM 5 C C3 GOL . . . E 3 19.739 -34.883 57.152 1 53.57 ? C3 GOL 3968 A 1 HETATM 6 O O3 GOL . . . E 3 20.849 -35.095 57.991 1 58.46 ? O3 GOL 3968 A 1 # _model_server_stats.io_time_ms 0 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 288 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 6 #