data_3QGD
#
_model_server_result.job_id            dHL6mHANKzfS1NeefqnMjQ 
_model_server_result.datetime_utc      '2025-08-15 17:53:42' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3qgd 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"G","auth_seq_id":602}' 
#
_entry.id    3QGD 
#
_exptl.entry_id    3QGD 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              555.646 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            (2R)-4-(2,6-dimethoxypyrimidin-4-yl)-1-[(4-ethylphenyl)sulfonyl]-N-(4-methoxybenzyl)piperazine-2-carboxamide 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            3QGD 
_cell.length_a            66 
_cell.length_b            91.6 
_cell.length_c            231.9 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3QGD 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,E,L 1 1 
B,F,G,H,I,J,K,M 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             G 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C27 H33 N5 O6 S' 
_chem_comp.formula_weight    555.646 
_chem_comp.id                26S 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              (2R)-4-(2,6-dimethoxypyrimidin-4-yl)-1-[(4-ethylphenyl)sulfonyl]-N-(4-methoxybenzyl)piperazine-2-carboxamide 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C5 26S doub 92 n y 
C1 C11 26S sing 93 n y 
C2 C6 26S sing 94 n y 
C2 C11 26S doub 95 n y 
C3 C7 26S doub 96 n y 
C3 C10 26S sing 97 n y 
C4 C8 26S sing 98 n y 
C4 C10 26S doub 99 n y 
C5 C12 26S sing 100 n y 
C6 C12 26S doub 101 n y 
C7 C13 26S sing 102 n y 
C8 C13 26S doub 103 n y 
C9 C14 26S doub 104 n y 
C9 C15 26S sing 105 n y 
C10 C26 26S sing 106 n n 
C11 C27 26S sing 107 n n 
C12 O36 26S sing 108 n n 
C13 S39 26S sing 109 n n 
C14 N28 26S sing 110 n y 
C14 N30 26S sing 111 n n 
C15 N29 26S doub 112 n y 
C15 O37 26S sing 113 n n 
C16 N28 26S doub 114 n y 
C16 N29 26S sing 115 n y 
C16 O38 26S sing 116 n n 
C17 C21 26S sing 117 n n 
C17 N32 26S sing 118 n n 
C17 O33 26S doub 119 n n 
C18 C19 26S sing 120 n n 
C18 N30 26S sing 121 n n 
C19 N31 26S sing 122 n n 
C20 C21 26S sing 123 n n 
C20 N30 26S sing 124 n n 
C21 N31 26S sing 125 n n 
C22 C26 26S sing 126 n n 
C23 O36 26S sing 127 n n 
C24 O37 26S sing 128 n n 
C25 O38 26S sing 129 n n 
C27 N32 26S sing 130 n n 
N31 S39 26S sing 131 n n 
O34 S39 26S doub 132 n n 
O35 S39 26S doub 133 n n 
C1 H1 26S sing 134 n n 
C2 H2 26S sing 135 n n 
C3 H3 26S sing 136 n n 
C4 H4 26S sing 137 n n 
C5 H5 26S sing 138 n n 
C6 H6 26S sing 139 n n 
C7 H7 26S sing 140 n n 
C8 H8 26S sing 141 n n 
C9 H9 26S sing 142 n n 
C18 H18 26S sing 143 n n 
C18 H18A 26S sing 144 n n 
C19 H19 26S sing 145 n n 
C19 H19A 26S sing 146 n n 
C20 H20 26S sing 147 n n 
C20 H20A 26S sing 148 n n 
C21 H21 26S sing 149 n n 
C22 H22 26S sing 150 n n 
C22 H22A 26S sing 151 n n 
C22 H22B 26S sing 152 n n 
C23 H23 26S sing 153 n n 
C23 H23A 26S sing 154 n n 
C23 H23B 26S sing 155 n n 
C24 H24 26S sing 156 n n 
C24 H24A 26S sing 157 n n 
C24 H24B 26S sing 158 n n 
C25 H25 26S sing 159 n n 
C25 H25A 26S sing 160 n n 
C25 H25B 26S sing 161 n n 
C26 H26 26S sing 162 n n 
C26 H26A 26S sing 163 n n 
C27 H27 26S sing 164 n n 
C27 H27A 26S sing 165 n n 
N32 HN32 26S sing 166 n n 
#
_atom_sites.entry_id                     3QGD 
_atom_sites.fract_transf_matrix[1][1]    0.015152 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.010917 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.004312 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 23E A 1 601 601 23E 23E . 
D 3 SO4 A 1 653 653 SO4 SO4 . 
E 3 SO4 A 1 652 652 SO4 SO4 . 
F 2 23E B 1 601 601 23E 23E . 
G 4 26S B 1 602 602 26S 26S . 
H 3 SO4 B 1 656 656 SO4 SO4 . 
I 3 SO4 B 1 653 653 SO4 SO4 . 
J 3 SO4 B 1 657 657 SO4 SO4 . 
K 3 SO4 B 1 658 658 SO4 SO4 . 
L 5 HOH A 1 701 701 HOH HOH . 
L 5 HOH A 2 702 702 HOH HOH . 
L 5 HOH A 3 703 703 HOH HOH . 
L 5 HOH A 4 704 704 HOH HOH . 
L 5 HOH A 5 705 705 HOH HOH . 
L 5 HOH A 6 706 706 HOH HOH . 
L 5 HOH A 7 707 707 HOH HOH . 
L 5 HOH A 8 708 708 HOH HOH . 
L 5 HOH A 9 709 709 HOH HOH . 
L 5 HOH A 10 710 710 HOH HOH . 
L 5 HOH A 11 711 711 HOH HOH . 
L 5 HOH A 12 712 712 HOH HOH . 
L 5 HOH A 13 713 713 HOH HOH . 
L 5 HOH A 14 714 714 HOH HOH . 
L 5 HOH A 15 715 715 HOH HOH . 
L 5 HOH A 16 716 716 HOH HOH . 
L 5 HOH A 17 717 717 HOH HOH . 
L 5 HOH A 18 718 718 HOH HOH . 
L 5 HOH A 19 719 719 HOH HOH . 
L 5 HOH A 20 720 720 HOH HOH . 
L 5 HOH A 21 721 721 HOH HOH . 
L 5 HOH A 22 722 722 HOH HOH . 
L 5 HOH A 23 723 723 HOH HOH . 
L 5 HOH A 24 724 724 HOH HOH . 
L 5 HOH A 25 725 725 HOH HOH . 
L 5 HOH A 26 726 726 HOH HOH . 
L 5 HOH A 27 727 727 HOH HOH . 
L 5 HOH A 28 728 728 HOH HOH . 
L 5 HOH A 29 729 729 HOH HOH . 
L 5 HOH A 30 730 730 HOH HOH . 
L 5 HOH A 31 731 731 HOH HOH . 
L 5 HOH A 32 732 732 HOH HOH . 
L 5 HOH A 33 733 733 HOH HOH . 
L 5 HOH A 34 734 734 HOH HOH . 
L 5 HOH A 35 735 735 HOH HOH . 
L 5 HOH A 36 736 736 HOH HOH . 
L 5 HOH A 37 737 737 HOH HOH . 
L 5 HOH A 38 738 738 HOH HOH . 
L 5 HOH A 39 739 739 HOH HOH . 
L 5 HOH A 40 740 740 HOH HOH . 
L 5 HOH A 41 741 741 HOH HOH . 
L 5 HOH A 42 742 742 HOH HOH . 
L 5 HOH A 43 743 743 HOH HOH . 
L 5 HOH A 44 744 744 HOH HOH . 
L 5 HOH A 45 745 745 HOH HOH . 
L 5 HOH A 46 746 746 HOH HOH . 
L 5 HOH A 47 747 747 HOH HOH . 
L 5 HOH A 48 748 748 HOH HOH . 
L 5 HOH A 49 749 749 HOH HOH . 
L 5 HOH A 50 750 750 HOH HOH . 
L 5 HOH A 51 751 751 HOH HOH . 
L 5 HOH A 52 752 752 HOH HOH . 
L 5 HOH A 53 753 753 HOH HOH . 
L 5 HOH A 54 754 754 HOH HOH . 
L 5 HOH A 55 755 755 HOH HOH . 
L 5 HOH A 56 756 756 HOH HOH . 
L 5 HOH A 57 757 757 HOH HOH . 
L 5 HOH A 58 758 758 HOH HOH . 
L 5 HOH A 59 759 759 HOH HOH . 
L 5 HOH A 60 760 760 HOH HOH . 
L 5 HOH A 61 761 761 HOH HOH . 
M 5 HOH B 1 701 701 HOH HOH . 
M 5 HOH B 2 702 702 HOH HOH . 
M 5 HOH B 3 703 703 HOH HOH . 
M 5 HOH B 4 704 704 HOH HOH . 
M 5 HOH B 5 705 705 HOH HOH . 
M 5 HOH B 6 706 706 HOH HOH . 
M 5 HOH B 7 707 707 HOH HOH . 
M 5 HOH B 8 708 708 HOH HOH . 
M 5 HOH B 9 709 709 HOH HOH . 
M 5 HOH B 10 710 710 HOH HOH . 
M 5 HOH B 11 711 711 HOH HOH . 
M 5 HOH B 12 712 712 HOH HOH . 
M 5 HOH B 13 713 713 HOH HOH . 
M 5 HOH B 14 714 714 HOH HOH . 
M 5 HOH B 15 715 715 HOH HOH . 
M 5 HOH B 16 716 716 HOH HOH . 
M 5 HOH B 17 717 717 HOH HOH . 
M 5 HOH B 18 718 718 HOH HOH . 
M 5 HOH B 19 719 719 HOH HOH . 
M 5 HOH B 20 720 720 HOH HOH . 
M 5 HOH B 21 721 721 HOH HOH . 
M 5 HOH B 22 722 722 HOH HOH . 
M 5 HOH B 23 723 723 HOH HOH . 
M 5 HOH B 24 724 724 HOH HOH . 
M 5 HOH B 25 725 725 HOH HOH . 
M 5 HOH B 26 726 726 HOH HOH . 
M 5 HOH B 27 727 727 HOH HOH . 
M 5 HOH B 28 728 728 HOH HOH . 
M 5 HOH B 29 729 729 HOH HOH . 
M 5 HOH B 30 730 730 HOH HOH . 
M 5 HOH B 31 731 731 HOH HOH . 
M 5 HOH B 32 732 732 HOH HOH . 
M 5 HOH B 33 733 733 HOH HOH . 
M 5 HOH B 34 734 734 HOH HOH . 
M 5 HOH B 35 735 735 HOH HOH . 
M 5 HOH B 36 736 736 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 26S . . . G 4 20.196 6.208 71.836 1 38.12 ? C1 26S 602 B 1 
HETATM 2 C C2 26S . . . G 4 22.515 6.879 72.116 1 33.31 ? C2 26S 602 B 1 
HETATM 3 C C3 26S . . . G 4 26.176 0.346 75.28 1 48.34 ? C3 26S 602 B 1 
HETATM 4 C C4 26S . . . G 4 28.083 -0.03 73.82 1 48.2 ? C4 26S 602 B 1 
HETATM 5 C C5 26S . . . G 4 19.843 6.987 72.946 1 39.15 ? C5 26S 602 B 1 
HETATM 6 C C6 26S . . . G 4 22.161 7.662 73.215 1 34.92 ? C6 26S 602 B 1 
HETATM 7 C C7 26S . . . G 4 25.829 1.459 74.514 1 50.56 ? C7 26S 602 B 1 
HETATM 8 C C8 26S . . . G 4 27.735 1.084 73.048 1 48.07 ? C8 26S 602 B 1 
HETATM 9 C C9 26S . . . G 4 21.329 0.106 69.258 1 38.2 ? C9 26S 602 B 1 
HETATM 10 C C10 26S . . . G 4 27.304 -0.4 74.936 1 48.92 ? C10 26S 602 B 1 
HETATM 11 C C11 26S . . . G 4 21.532 6.161 71.423 1 36.18 ? C11 26S 602 B 1 
HETATM 12 C C12 26S . . . G 4 20.828 7.715 73.641 1 38.76 ? C12 26S 602 B 1 
HETATM 13 C C13 26S . . . G 4 26.593 1.831 73.392 1 51.01 ? C13 26S 602 B 1 
HETATM 14 C C14 26S . . . G 4 22.659 0.348 68.935 1 40.13 ? C14 26S 602 B 1 
HETATM 15 C C15 26S . . . G 4 20.507 -0.221 68.191 1 39.41 ? C15 26S 602 B 1 
HETATM 16 C C16 26S . . . G 4 22.229 -0.047 66.697 1 39.77 ? C16 26S 602 B 1 
HETATM 17 C C17 26S . . . G 4 22.481 3.143 71.338 1 38.76 ? C17 26S 602 B 1 
HETATM 18 C C18 26S . . . G 4 24.981 0.937 69.591 1 40.97 ? C18 26S 602 B 1 
HETATM 19 C C19 26S . . . G 4 25.363 2.37 69.956 1 44.48 ? C19 26S 602 B 1 
HETATM 20 C C20 26S . . . G 4 23.249 0.793 71.368 1 40.12 ? C20 26S 602 B 1 
HETATM 21 C C21 26S . . . G 4 23.566 2.215 71.818 1 42.8 ? C21 26S 602 B 1 
HETATM 22 C C22 26S . . . G 4 29.126 -1.539 76.242 1 47.29 ? C22 26S 602 B 1 
HETATM 23 C C23 26S . . . G 4 19.162 8.453 75.221 1 44.1 ? C23 26S 602 B 1 
HETATM 24 C C24 26S . . . G 4 18.346 -0.818 67.322 1 43.54 ? C24 26S 602 B 1 
HETATM 25 C C25 26S . . . G 4 24.075 0.158 65.182 1 35.71 ? C25 26S 602 B 1 
HETATM 26 C C26 26S . . . G 4 27.672 -1.591 75.765 1 47.8 ? C26 26S 602 B 1 
HETATM 27 C C27 26S . . . G 4 21.932 5.313 70.257 1 36.69 ? C27 26S 602 B 1 
HETATM 28 N N28 26S . . . G 4 23.129 0.275 67.66 1 41.57 ? N28 26S 602 B 1 
HETATM 29 N N29 26S . . . G 4 20.918 -0.304 66.895 1 39.9 ? N29 26S 602 B 1 
HETATM 30 N N30 26S . . . G 4 23.581 0.678 69.945 1 39.88 ? N30 26S 602 B 1 
HETATM 31 N N31 26S . . . G 4 24.911 2.71 71.338 1 48.44 ? N31 26S 602 B 1 
HETATM 32 N N32 26S . . . G 4 22.877 4.328 70.753 1 37.23 ? N32 26S 602 B 1 
HETATM 33 O O33 26S . . . G 4 21.318 2.786 71.482 1 38.38 ? O33 26S 602 B 1 
HETATM 34 O O34 26S . . . G 4 25.445 4.149 73.393 1 52.6 ? O34 26S 602 B 1 
HETATM 35 O O35 26S . . . G 4 27.278 3.686 71.685 1 50.02 ? O35 26S 602 B 1 
HETATM 36 O O36 26S . . . G 4 20.507 8.471 74.736 1 40.98 ? O36 26S 602 B 1 
HETATM 37 O O37 26S . . . G 4 19.185 -0.477 68.435 1 44.42 ? O37 26S 602 B 1 
HETATM 38 O O38 26S . . . G 4 22.691 -0.124 65.401 1 35.88 ? O38 26S 602 B 1 
HETATM 39 S S39 26S . . . G 4 26.112 3.266 72.45 1 50.98 ? S39 26S 602 B 1 
#
_model_server_stats.io_time_ms              11 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    12 
_model_server_stats.query_time_ms           299 
_model_server_stats.encode_time_ms          7 
_model_server_stats.element_count           39 
#