data_3QGE
#
_model_server_result.job_id            y0ApcXAAk-oA5z54odbpfg 
_model_server_result.datetime_utc      '2025-08-15 17:53:41' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3qge 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":601}' 
#
_entry.id    3QGE 
#
_exptl.entry_id    3QGE 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              630.732 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '(2E)-3-(4-{[(1-{[(13-cyclohexyl-6-oxo-6,7-dihydro-5H-indolo[1,2-d][1,4]benzodiazepin-10-yl)carbonyl]amino}cyclopentyl)carbonyl]amino}phenyl)prop-2-enoic acid' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            3QGE 
_cell.length_a            66.7 
_cell.length_b            91.4 
_cell.length_c            232.1 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3QGE 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,E,F,G,O 1 1 
B,H,I,J,K,L,M,N,P 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 H N N 
#
_chem_comp.formula           'C38 H38 N4 O5' 
_chem_comp.formula_weight    630.732 
_chem_comp.id                23E 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '(2E)-3-(4-{[(1-{[(13-cyclohexyl-6-oxo-6,7-dihydro-5H-indolo[1,2-d][1,4]benzodiazepin-10-yl)carbonyl]amino}cyclopentyl)carbonyl]amino}phenyl)prop-2-enoic acid' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C2 N1 23E sing 1 n n 
N1 C21 23E sing 2 n n 
N1 HN1 23E sing 3 n n 
C17 C2 23E sing 4 n n 
C3 C2 23E sing 5 n n 
C16 C2 23E sing 6 n n 
O6 C3 23E doub 7 n n 
C3 N4 23E sing 8 n n 
C5 N4 23E sing 9 n n 
N4 HN4 23E sing 10 n n 
C7 C5 23E doub 11 n y 
C11 C5 23E sing 12 n y 
C8 C7 23E sing 13 n y 
C7 H7 23E sing 14 n n 
C9 C8 23E doub 15 n y 
C8 H8 23E sing 16 n n 
C12 C9 23E sing 17 n n 
C9 C10 23E sing 18 n y 
C10 C11 23E doub 19 n y 
C10 H10 23E sing 20 e n 
C11 H11 23E sing 21 n n 
C12 C13 23E doub 22 n n 
C12 H12 23E sing 23 n n 
C14 C13 23E sing 24 n n 
C13 H13 23E sing 25 n n 
O15 C14 23E doub 26 n n 
C14 O20 23E sing 27 n n 
C18 C16 23E sing 28 n n 
C16 H16 23E sing 29 n n 
C16 H16A 23E sing 30 n n 
C19 C17 23E sing 31 n n 
C17 H17 23E sing 32 n n 
C17 H17A 23E sing 33 n n 
C19 C18 23E sing 34 n n 
C18 H18 23E sing 35 n n 
C18 H18A 23E sing 36 n n 
C19 H19 23E sing 37 n n 
C19 H19A 23E sing 38 n n 
O20 HO20 23E sing 39 n n 
O38 C21 23E doub 40 n n 
C21 C22 23E sing 41 n n 
C22 C25 23E doub 42 n y 
C22 C23 23E sing 43 n y 
C23 C24 23E doub 44 n y 
C23 H23 23E sing 45 n n 
C24 C28 23E sing 46 n y 
C24 H24 23E sing 47 n n 
C25 C27 23E sing 48 n y 
C25 H25 23E sing 49 n n 
C44 N26 23E sing 50 n n 
C27 N26 23E sing 51 n y 
N26 C30 23E sing 52 n y 
C27 C28 23E doub 53 n y 
C28 C29 23E sing 54 n y 
C30 C29 23E doub 55 n y 
C29 C31 23E sing 56 n n 
C30 C32 23E sing 57 n y 
C31 C37 23E sing 58 n n 
C31 C33 23E sing 59 n n 
C31 H31 23E sing 60 n n 
C43 C32 23E doub 61 n y 
C32 C39 23E sing 62 n y 
C33 C34 23E sing 63 n n 
C33 H33 23E sing 64 n n 
C33 H33A 23E sing 65 n n 
C35 C34 23E sing 66 n n 
C34 H34 23E sing 67 n n 
C34 H34A 23E sing 68 n n 
C36 C35 23E sing 69 n n 
C35 H35 23E sing 70 n n 
C35 H35A 23E sing 71 n n 
C37 C36 23E sing 72 n n 
C36 H36 23E sing 73 n n 
C36 H36A 23E sing 74 n n 
C37 H37 23E sing 75 n n 
C37 H37A 23E sing 76 n n 
C39 C40 23E doub 77 n y 
C39 H39 23E sing 78 n n 
C41 C40 23E sing 79 n y 
C40 H40 23E sing 80 n n 
C42 C41 23E doub 81 n y 
C41 H41 23E sing 82 n n 
C43 C42 23E sing 83 n y 
C42 H42 23E sing 84 n n 
N45 C43 23E sing 85 n n 
C44 C46 23E sing 86 n n 
C44 H44 23E sing 87 n n 
C44 H44A 23E sing 88 n n 
C46 N45 23E sing 89 n n 
N45 HN45 23E sing 90 n n 
O47 C46 23E doub 91 n n 
#
_atom_sites.entry_id                     3QGE 
_atom_sites.fract_transf_matrix[1][1]    0.014993 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.010941 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.004308 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 23E A 1 601 601 23E 23E . 
D 3 SO4 A 1 651 651 SO4 SO4 . 
E 3 SO4 A 1 652 652 SO4 SO4 . 
F 3 SO4 A 1 653 653 SO4 SO4 . 
G 3 SO4 A 1 654 654 SO4 SO4 . 
H 2 23E B 1 601 601 23E 23E . 
I 4 26F B 1 602 602 26F 26F . 
J 3 SO4 B 1 653 653 SO4 SO4 . 
K 3 SO4 B 1 656 656 SO4 SO4 . 
L 3 SO4 B 1 657 657 SO4 SO4 . 
M 3 SO4 B 1 652 652 SO4 SO4 . 
N 3 SO4 B 1 658 658 SO4 SO4 . 
O 5 HOH A 1 701 701 HOH HOH . 
O 5 HOH A 2 702 702 HOH HOH . 
O 5 HOH A 3 703 703 HOH HOH . 
O 5 HOH A 4 704 704 HOH HOH . 
P 5 HOH B 1 701 701 HOH HOH . 
P 5 HOH B 2 702 702 HOH HOH . 
P 5 HOH B 3 703 703 HOH HOH . 
P 5 HOH B 4 704 704 HOH HOH . 
P 5 HOH B 5 705 705 HOH HOH . 
P 5 HOH B 6 706 706 HOH HOH . 
P 5 HOH B 7 707 707 HOH HOH . 
P 5 HOH B 8 708 708 HOH HOH . 
P 5 HOH B 9 709 709 HOH HOH . 
P 5 HOH B 10 710 710 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1 23E . . . C 2 21.084 3.463 -15.142 1 30.86 ? N1 23E 601 A 1 
HETATM 2 C C2 23E . . . C 2 20.786 3.501 -16.579 1 30.04 ? C2 23E 601 A 1 
HETATM 3 C C3 23E . . . C 2 21.355 4.75 -17.189 1 27.73 ? C3 23E 601 A 1 
HETATM 4 N N4 23E . . . C 2 22.611 5.118 -16.804 1 29.56 ? N4 23E 601 A 1 
HETATM 5 C C5 23E . . . C 2 23.29 6.275 -17.279 1 30.45 ? C5 23E 601 A 1 
HETATM 6 O O6 23E . . . C 2 20.647 5.365 -17.982 1 24.03 ? O6 23E 601 A 1 
HETATM 7 C C7 23E . . . C 2 22.582 7.394 -17.779 1 32 ? C7 23E 601 A 1 
HETATM 8 C C8 23E . . . C 2 23.283 8.515 -18.235 1 33.85 ? C8 23E 601 A 1 
HETATM 9 C C9 23E . . . C 2 24.701 8.533 -18.189 1 39.06 ? C9 23E 601 A 1 
HETATM 10 C C10 23E . . . C 2 25.387 7.41 -17.671 1 33.29 ? C10 23E 601 A 1 
HETATM 11 C C11 23E . . . C 2 24.682 6.294 -17.219 1 28.97 ? C11 23E 601 A 1 
HETATM 12 C C12 23E . . . C 2 25.409 9.786 -18.693 1 46.59 ? C12 23E 601 A 1 
HETATM 13 C C13 23E . . . C 2 26.731 9.979 -18.74 1 54.17 ? C13 23E 601 A 1 
HETATM 14 C C14 23E . . . C 2 27.341 11.224 -19.24 1 62.76 ? C14 23E 601 A 1 
HETATM 15 O O15 23E . . . C 2 26.64 12.017 -20.082 1 62.77 ? O15 23E 601 A 1 
HETATM 16 C C16 23E . . . C 2 19.274 3.283 -16.846 1 28.59 ? C16 23E 601 A 1 
HETATM 17 C C17 23E . . . C 2 21.385 2.227 -17.245 1 31.08 ? C17 23E 601 A 1 
HETATM 18 C C18 23E . . . C 2 19.181 2.664 -18.259 1 26.35 ? C18 23E 601 A 1 
HETATM 19 C C19 23E . . . C 2 20.53 1.95 -18.507 1 27.32 ? C19 23E 601 A 1 
HETATM 20 O O20 23E . . . C 2 28.48 11.516 -18.869 1 67.86 ? O20 23E 601 A 1 
HETATM 21 C C21 23E . . . C 2 20.741 4.422 -14.238 1 32.46 ? C21 23E 601 A 1 
HETATM 22 C C22 23E . . . C 2 21.104 4.163 -12.79 1 32.15 ? C22 23E 601 A 1 
HETATM 23 C C23 23E . . . C 2 20.301 4.65 -11.753 1 30.13 ? C23 23E 601 A 1 
HETATM 24 C C24 23E . . . C 2 20.56 4.35 -10.424 1 28.81 ? C24 23E 601 A 1 
HETATM 25 C C25 23E . . . C 2 22.159 3.288 -12.501 1 33.57 ? C25 23E 601 A 1 
HETATM 26 N N26 23E . . . C 2 23.367 2.202 -10.588 1 33.43 ? N26 23E 601 A 1 
HETATM 27 C C27 23E . . . C 2 22.402 2.97 -11.164 1 32.93 ? C27 23E 601 A 1 
HETATM 28 C C28 23E . . . C 2 21.623 3.508 -10.169 1 31.42 ? C28 23E 601 A 1 
HETATM 29 C C29 23E . . . C 2 22.215 2.955 -8.901 1 32.33 ? C29 23E 601 A 1 
HETATM 30 C C30 23E . . . C 2 23.239 2.181 -9.28 1 31.65 ? C30 23E 601 A 1 
HETATM 31 C C31 23E . . . C 2 21.604 3.269 -7.555 1 29.24 ? C31 23E 601 A 1 
HETATM 32 C C32 23E . . . C 2 24.124 1.363 -8.388 1 31.05 ? C32 23E 601 A 1 
HETATM 33 C C33 23E . . . C 2 21.798 4.722 -7.036 1 24.58 ? C33 23E 601 A 1 
HETATM 34 C C34 23E . . . C 2 21.212 4.803 -5.606 1 21.63 ? C34 23E 601 A 1 
HETATM 35 C C35 23E . . . C 2 19.718 4.376 -5.631 1 21.4 ? C35 23E 601 A 1 
HETATM 36 C C36 23E . . . C 2 19.509 2.923 -6.119 1 20.09 ? C36 23E 601 A 1 
HETATM 37 C C37 23E . . . C 2 20.098 2.803 -7.536 1 24.35 ? C37 23E 601 A 1 
HETATM 38 O O38 23E . . . C 2 20.098 5.428 -14.516 1 33 ? O38 23E 601 A 1 
HETATM 39 C C39 23E . . . C 2 24.561 1.893 -7.163 1 31.35 ? C39 23E 601 A 1 
HETATM 40 C C40 23E . . . C 2 25.274 1.083 -6.264 1 31.42 ? C40 23E 601 A 1 
HETATM 41 C C41 23E . . . C 2 25.571 -0.246 -6.622 1 31.26 ? C41 23E 601 A 1 
HETATM 42 C C42 23E . . . C 2 25.173 -0.774 -7.867 1 29.48 ? C42 23E 601 A 1 
HETATM 43 C C43 23E . . . C 2 24.433 0.026 -8.758 1 30.71 ? C43 23E 601 A 1 
HETATM 44 C C44 23E . . . C 2 24.433 1.494 -11.29 1 31.3 ? C44 23E 601 A 1 
HETATM 45 N N45 23E . . . C 2 23.953 -0.54 -9.98 1 29.72 ? N45 23E 601 A 1 
HETATM 46 C C46 23E . . . C 2 23.931 0.095 -11.171 1 31.4 ? C46 23E 601 A 1 
HETATM 47 O O47 23E . . . C 2 23.485 -0.448 -12.176 1 34.86 ? O47 23E 601 A 1 
#
_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           26 
_model_server_stats.create_model_time_ms    19 
_model_server_stats.query_time_ms           264 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           47 
#