data_3QGN # _model_server_result.job_id d_s2RttPWoI3eo76ZthrkA _model_server_result.datetime_utc '2024-12-27 01:06:20' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3qgn # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":403}' # _entry.id 3QGN # _exptl.entry_id 3QGN _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 126.904 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'IODIDE ION' _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 94.31 _cell.angle_gamma 90 _cell.entry_id 3QGN _cell.length_a 122.179 _cell.length_b 47.98 _cell.length_c 52.011 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3QGN _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 E N N ? 3 F N N ? 3 G N N ? 3 H N N ? 3 I N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 4 A CYS 1 1_555 B SG CYS 119 B CYS 122 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.075 ? disulf ? disulf2 B SG CYS 28 B CYS 42 1_555 B SG CYS 44 B CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? disulf ? disulf3 B SG CYS 173 B CYS 168 1_555 B SG CYS 187 B CYS 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? disulf ? disulf4 B SG CYS 201 B CYS 191 1_555 B SG CYS 231 B CYS 220 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? covale ? covale1 B ND2 ASN 53 B ASN 60 1_555 D C1 NAG . B NAG 301 1_555 G ? ? ? ? ? ? ? ? ? ? ? 1.444 ? # _chem_comp.formula 'I -1' _chem_comp.formula_weight 126.904 _chem_comp.id IOD _chem_comp.mon_nstd_flag . _chem_comp.name 'IODIDE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 3QGN _atom_sites.fract_transf_matrix[1][1] 0.008185 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000617 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.020842 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.019281 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 IOD A 1 402 402 IOD IOD . D 4 NAG B 1 301 301 NAG NAG . E 3 IOD B 1 401 401 IOD IOD . F 3 IOD B 1 403 403 IOD IOD . G 3 IOD B 1 404 404 IOD IOD . H 3 IOD B 1 405 405 IOD IOD . I 3 IOD B 1 406 406 IOD IOD . J 5 CL B 1 407 407 CL CL . K 6 HOH A 1 17 14 HOH HOH . K 6 HOH A 2 33 33 HOH HOH . K 6 HOH A 3 49 49 HOH HOH . K 6 HOH A 4 63 63 HOH HOH . K 6 HOH A 5 64 64 HOH HOH . K 6 HOH A 6 70 70 HOH HOH . K 6 HOH A 7 87 87 HOH HOH . K 6 HOH A 8 103 103 HOH HOH . K 6 HOH A 9 106 106 HOH HOH . K 6 HOH A 10 112 112 HOH HOH . K 6 HOH A 11 118 118 HOH HOH . K 6 HOH A 12 123 123 HOH HOH . K 6 HOH A 13 131 131 HOH HOH . K 6 HOH A 14 149 149 HOH HOH . K 6 HOH A 15 150 150 HOH HOH . L 6 HOH B 1 1 1 HOH HOH . L 6 HOH B 2 2 2 HOH HOH . L 6 HOH B 3 3 3 HOH HOH . L 6 HOH B 4 4 4 HOH HOH . L 6 HOH B 5 5 5 HOH HOH . L 6 HOH B 6 6 6 HOH HOH . L 6 HOH B 7 7 7 HOH HOH . L 6 HOH B 8 8 8 HOH HOH . L 6 HOH B 9 9 9 HOH HOH . L 6 HOH B 10 10 10 HOH HOH . L 6 HOH B 11 11 11 HOH HOH . L 6 HOH B 12 12 12 HOH HOH . L 6 HOH B 13 13 13 HOH HOH . L 6 HOH B 14 15 15 HOH HOH . L 6 HOH B 15 248 16 HOH HOH . L 6 HOH B 16 249 17 HOH HOH . L 6 HOH B 17 250 18 HOH HOH . L 6 HOH B 18 251 19 HOH HOH . L 6 HOH B 19 252 20 HOH HOH . L 6 HOH B 20 253 21 HOH HOH . L 6 HOH B 21 254 22 HOH HOH . L 6 HOH B 22 255 23 HOH HOH . L 6 HOH B 23 256 24 HOH HOH . L 6 HOH B 24 257 25 HOH HOH . L 6 HOH B 25 258 26 HOH HOH . L 6 HOH B 26 259 27 HOH HOH . L 6 HOH B 27 260 28 HOH HOH . L 6 HOH B 28 261 29 HOH HOH . L 6 HOH B 29 262 30 HOH HOH . L 6 HOH B 30 263 31 HOH HOH . L 6 HOH B 31 264 32 HOH HOH . L 6 HOH B 32 265 34 HOH HOH . L 6 HOH B 33 266 35 HOH HOH . L 6 HOH B 34 267 36 HOH HOH . L 6 HOH B 35 268 37 HOH HOH . L 6 HOH B 36 269 38 HOH HOH . L 6 HOH B 37 270 39 HOH HOH . L 6 HOH B 38 271 40 HOH HOH . L 6 HOH B 39 272 41 HOH HOH . L 6 HOH B 40 273 42 HOH HOH . L 6 HOH B 41 274 43 HOH HOH . L 6 HOH B 42 275 44 HOH HOH . L 6 HOH B 43 276 45 HOH HOH . L 6 HOH B 44 277 46 HOH HOH . L 6 HOH B 45 278 47 HOH HOH . L 6 HOH B 46 279 48 HOH HOH . L 6 HOH B 47 280 50 HOH HOH . L 6 HOH B 48 281 51 HOH HOH . L 6 HOH B 49 282 52 HOH HOH . L 6 HOH B 50 283 53 HOH HOH . L 6 HOH B 51 284 54 HOH HOH . L 6 HOH B 52 285 55 HOH HOH . L 6 HOH B 53 286 56 HOH HOH . L 6 HOH B 54 287 57 HOH HOH . L 6 HOH B 55 288 58 HOH HOH . L 6 HOH B 56 289 59 HOH HOH . L 6 HOH B 57 290 60 HOH HOH . L 6 HOH B 58 291 61 HOH HOH . L 6 HOH B 59 292 62 HOH HOH . L 6 HOH B 60 293 65 HOH HOH . L 6 HOH B 61 294 66 HOH HOH . L 6 HOH B 62 295 67 HOH HOH . L 6 HOH B 63 296 68 HOH HOH . L 6 HOH B 64 297 69 HOH HOH . L 6 HOH B 65 298 71 HOH HOH . L 6 HOH B 66 299 72 HOH HOH . L 6 HOH B 67 300 73 HOH HOH . L 6 HOH B 68 302 74 HOH HOH . L 6 HOH B 69 303 75 HOH HOH . L 6 HOH B 70 304 76 HOH HOH . L 6 HOH B 71 305 77 HOH HOH . L 6 HOH B 72 306 78 HOH HOH . L 6 HOH B 73 307 79 HOH HOH . L 6 HOH B 74 308 80 HOH HOH . L 6 HOH B 75 309 81 HOH HOH . L 6 HOH B 76 310 82 HOH HOH . L 6 HOH B 77 311 83 HOH HOH . L 6 HOH B 78 312 84 HOH HOH . L 6 HOH B 79 313 85 HOH HOH . L 6 HOH B 80 314 86 HOH HOH . L 6 HOH B 81 315 88 HOH HOH . L 6 HOH B 82 316 89 HOH HOH . L 6 HOH B 83 317 90 HOH HOH . L 6 HOH B 84 318 91 HOH HOH . L 6 HOH B 85 319 92 HOH HOH . L 6 HOH B 86 320 93 HOH HOH . L 6 HOH B 87 321 94 HOH HOH . L 6 HOH B 88 322 95 HOH HOH . L 6 HOH B 89 323 96 HOH HOH . L 6 HOH B 90 324 97 HOH HOH . L 6 HOH B 91 325 98 HOH HOH . L 6 HOH B 92 326 99 HOH HOH . L 6 HOH B 93 327 100 HOH HOH . L 6 HOH B 94 328 101 HOH HOH . L 6 HOH B 95 329 102 HOH HOH . L 6 HOH B 96 330 104 HOH HOH . L 6 HOH B 97 331 105 HOH HOH . L 6 HOH B 98 332 107 HOH HOH . L 6 HOH B 99 333 108 HOH HOH . L 6 HOH B 100 334 109 HOH HOH . L 6 HOH B 101 335 110 HOH HOH . L 6 HOH B 102 336 111 HOH HOH . L 6 HOH B 103 337 113 HOH HOH . L 6 HOH B 104 338 114 HOH HOH . L 6 HOH B 105 339 115 HOH HOH . L 6 HOH B 106 340 116 HOH HOH . L 6 HOH B 107 341 117 HOH HOH . L 6 HOH B 108 342 119 HOH HOH . L 6 HOH B 109 343 120 HOH HOH . L 6 HOH B 110 344 121 HOH HOH . L 6 HOH B 111 345 122 HOH HOH . L 6 HOH B 112 346 124 HOH HOH . L 6 HOH B 113 347 125 HOH HOH . L 6 HOH B 114 348 126 HOH HOH . L 6 HOH B 115 349 127 HOH HOH . L 6 HOH B 116 350 128 HOH HOH . L 6 HOH B 117 351 129 HOH HOH . L 6 HOH B 118 352 130 HOH HOH . L 6 HOH B 119 353 132 HOH HOH . L 6 HOH B 120 354 133 HOH HOH . L 6 HOH B 121 355 134 HOH HOH . L 6 HOH B 122 356 135 HOH HOH . L 6 HOH B 123 357 136 HOH HOH . L 6 HOH B 124 358 137 HOH HOH . L 6 HOH B 125 359 138 HOH HOH . L 6 HOH B 126 360 139 HOH HOH . L 6 HOH B 127 361 140 HOH HOH . L 6 HOH B 128 362 141 HOH HOH . L 6 HOH B 129 363 142 HOH HOH . L 6 HOH B 130 364 143 HOH HOH . L 6 HOH B 131 365 144 HOH HOH . L 6 HOH B 132 366 145 HOH HOH . L 6 HOH B 133 367 146 HOH HOH . L 6 HOH B 134 368 147 HOH HOH . L 6 HOH B 135 369 148 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol I _atom_site.label_atom_id I _atom_site.label_comp_id IOD _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id F _atom_site.label_entity_id 3 _atom_site.Cartn_x -17.132 _atom_site.Cartn_y -9.934 _atom_site.Cartn_z 21.063 _atom_site.occupancy 0.5 _atom_site.B_iso_or_equiv 54.64 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id I _atom_site.auth_comp_id IOD _atom_site.auth_seq_id 403 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 259 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 1 #