data_3QGZ # _model_server_result.job_id C2XyXGem6dzMNTrIkWpYJA _model_server_result.datetime_utc '2024-11-27 07:20:14' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3qgz # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":127}' # _entry.id 3QGZ # _exptl.entry_id 3QGZ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 267.241 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description ADENOSINE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3QGZ _cell.length_a 39.747 _cell.length_b 39.747 _cell.length_c 141.83 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3QGZ _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 7_556 y,x,-z+1 0 1 0 1 0 0 0 0 -1 0 0 141.83 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C10 H13 N5 O4' _chem_comp.formula_weight 267.241 _chem_comp.id ADN _chem_comp.mon_nstd_flag . _chem_comp.name ADENOSINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O5' C5' ADN sing 1 n n O5' HO5' ADN sing 2 n n C5' C4' ADN sing 3 n n C5' "H5'1" ADN sing 4 n n C5' "H5'2" ADN sing 5 n n C4' O4' ADN sing 6 n n C4' C3' ADN sing 7 n n C4' H4' ADN sing 8 n n O4' C1' ADN sing 9 n n C3' O3' ADN sing 10 n n C3' C2' ADN sing 11 n n C3' H3' ADN sing 12 n n O3' HO3' ADN sing 13 n n C2' O2' ADN sing 14 n n C2' C1' ADN sing 15 n n C2' H2' ADN sing 16 n n O2' HO2' ADN sing 17 n n C1' N9 ADN sing 18 n n C1' H1' ADN sing 19 n n N9 C8 ADN sing 20 n y N9 C4 ADN sing 21 n y C8 N7 ADN doub 22 n y C8 H8 ADN sing 23 n n N7 C5 ADN sing 24 n y C5 C6 ADN sing 25 n y C5 C4 ADN doub 26 n y C6 N6 ADN sing 27 n n C6 N1 ADN doub 28 n y N6 HN61 ADN sing 29 n n N6 HN62 ADN sing 30 n n N1 C2 ADN sing 31 n y C2 N3 ADN doub 32 n y C2 H2 ADN sing 33 n n N3 C4 ADN sing 34 n y # _atom_sites.entry_id 3QGZ _atom_sites.fract_transf_matrix[1][1] 0.025159 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.025159 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007051 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ADN A 1 127 1 ADN ADN . C 3 HOH A 1 128 128 HOH HOH . C 3 HOH A 2 129 129 HOH HOH . C 3 HOH A 3 130 130 HOH HOH . C 3 HOH A 4 131 131 HOH HOH . C 3 HOH A 5 132 132 HOH HOH . C 3 HOH A 6 133 133 HOH HOH . C 3 HOH A 7 134 134 HOH HOH . C 3 HOH A 8 135 1 HOH HOH . C 3 HOH A 9 136 136 HOH HOH . C 3 HOH A 10 137 137 HOH HOH . C 3 HOH A 11 138 138 HOH HOH . C 3 HOH A 12 139 139 HOH HOH . C 3 HOH A 13 140 140 HOH HOH . C 3 HOH A 14 141 141 HOH HOH . C 3 HOH A 15 142 142 HOH HOH . C 3 HOH A 16 143 143 HOH HOH . C 3 HOH A 17 144 144 HOH HOH . C 3 HOH A 18 145 145 HOH HOH . C 3 HOH A 19 146 146 HOH HOH . C 3 HOH A 20 147 147 HOH HOH . C 3 HOH A 21 148 148 HOH HOH . C 3 HOH A 22 149 149 HOH HOH . C 3 HOH A 23 150 150 HOH HOH . C 3 HOH A 24 151 2 HOH HOH . C 3 HOH A 25 152 152 HOH HOH . C 3 HOH A 26 153 153 HOH HOH . C 3 HOH A 27 154 154 HOH HOH . C 3 HOH A 28 155 155 HOH HOH . C 3 HOH A 29 156 156 HOH HOH . C 3 HOH A 30 157 157 HOH HOH . C 3 HOH A 31 158 158 HOH HOH . C 3 HOH A 32 159 159 HOH HOH . C 3 HOH A 33 160 160 HOH HOH . C 3 HOH A 34 161 161 HOH HOH . C 3 HOH A 35 162 162 HOH HOH . C 3 HOH A 36 163 163 HOH HOH . C 3 HOH A 37 164 3 HOH HOH . C 3 HOH A 38 165 4 HOH HOH . C 3 HOH A 39 166 5 HOH HOH . C 3 HOH A 40 167 6 HOH HOH . C 3 HOH A 41 168 7 HOH HOH . C 3 HOH A 42 169 8 HOH HOH . C 3 HOH A 43 170 9 HOH HOH . C 3 HOH A 44 171 10 HOH HOH . C 3 HOH A 45 172 11 HOH HOH . C 3 HOH A 46 173 12 HOH HOH . C 3 HOH A 47 174 13 HOH HOH . C 3 HOH A 48 175 14 HOH HOH . C 3 HOH A 49 176 15 HOH HOH . C 3 HOH A 50 177 16 HOH HOH . C 3 HOH A 51 178 17 HOH HOH . C 3 HOH A 52 179 18 HOH HOH . C 3 HOH A 53 180 19 HOH HOH . C 3 HOH A 54 181 20 HOH HOH . C 3 HOH A 55 182 21 HOH HOH . C 3 HOH A 56 183 22 HOH HOH . C 3 HOH A 57 184 23 HOH HOH . C 3 HOH A 58 185 24 HOH HOH . C 3 HOH A 59 186 25 HOH HOH . C 3 HOH A 60 187 26 HOH HOH . C 3 HOH A 61 188 27 HOH HOH . C 3 HOH A 62 189 28 HOH HOH . C 3 HOH A 63 190 29 HOH HOH . C 3 HOH A 64 191 30 HOH HOH . C 3 HOH A 65 192 31 HOH HOH . C 3 HOH A 66 193 32 HOH HOH . C 3 HOH A 67 194 33 HOH HOH . C 3 HOH A 68 195 34 HOH HOH . C 3 HOH A 69 196 35 HOH HOH . C 3 HOH A 70 197 36 HOH HOH . C 3 HOH A 71 198 37 HOH HOH . C 3 HOH A 72 199 38 HOH HOH . C 3 HOH A 73 200 39 HOH HOH . C 3 HOH A 74 201 40 HOH HOH . C 3 HOH A 75 202 41 HOH HOH . C 3 HOH A 76 203 42 HOH HOH . C 3 HOH A 77 204 43 HOH HOH . C 3 HOH A 78 205 44 HOH HOH . C 3 HOH A 79 206 45 HOH HOH . C 3 HOH A 80 207 46 HOH HOH . C 3 HOH A 81 208 47 HOH HOH . C 3 HOH A 82 209 48 HOH HOH . C 3 HOH A 83 210 49 HOH HOH . C 3 HOH A 84 211 50 HOH HOH . C 3 HOH A 85 212 51 HOH HOH . C 3 HOH A 86 213 52 HOH HOH . C 3 HOH A 87 214 53 HOH HOH . C 3 HOH A 88 215 54 HOH HOH . C 3 HOH A 89 216 55 HOH HOH . C 3 HOH A 90 217 56 HOH HOH . C 3 HOH A 91 218 57 HOH HOH . C 3 HOH A 92 219 58 HOH HOH . C 3 HOH A 93 220 59 HOH HOH . C 3 HOH A 94 221 60 HOH HOH . C 3 HOH A 95 222 61 HOH HOH . C 3 HOH A 96 223 62 HOH HOH . C 3 HOH A 97 224 63 HOH HOH . C 3 HOH A 98 225 64 HOH HOH . C 3 HOH A 99 226 65 HOH HOH . C 3 HOH A 100 227 66 HOH HOH . C 3 HOH A 101 228 67 HOH HOH . C 3 HOH A 102 229 68 HOH HOH . C 3 HOH A 103 230 69 HOH HOH . C 3 HOH A 104 231 70 HOH HOH . C 3 HOH A 105 232 71 HOH HOH . C 3 HOH A 106 233 72 HOH HOH . C 3 HOH A 107 234 73 HOH HOH . C 3 HOH A 108 235 74 HOH HOH . C 3 HOH A 109 236 75 HOH HOH . C 3 HOH A 110 237 76 HOH HOH . C 3 HOH A 111 238 77 HOH HOH . C 3 HOH A 112 239 78 HOH HOH . C 3 HOH A 113 240 79 HOH HOH . C 3 HOH A 114 241 80 HOH HOH . C 3 HOH A 115 242 81 HOH HOH . C 3 HOH A 116 243 82 HOH HOH . C 3 HOH A 117 244 83 HOH HOH . C 3 HOH A 118 245 84 HOH HOH . C 3 HOH A 119 246 85 HOH HOH . C 3 HOH A 120 247 86 HOH HOH . C 3 HOH A 121 248 87 HOH HOH . C 3 HOH A 122 249 88 HOH HOH . C 3 HOH A 123 250 89 HOH HOH . C 3 HOH A 124 251 90 HOH HOH . C 3 HOH A 125 252 91 HOH HOH . C 3 HOH A 126 253 92 HOH HOH . C 3 HOH A 127 254 93 HOH HOH . C 3 HOH A 128 255 94 HOH HOH . C 3 HOH A 129 256 95 HOH HOH . C 3 HOH A 130 257 96 HOH HOH . C 3 HOH A 131 258 97 HOH HOH . C 3 HOH A 132 259 98 HOH HOH . C 3 HOH A 133 260 99 HOH HOH . C 3 HOH A 134 261 100 HOH HOH . C 3 HOH A 135 262 101 HOH HOH . C 3 HOH A 136 263 102 HOH HOH . C 3 HOH A 137 264 103 HOH HOH . C 3 HOH A 138 265 104 HOH HOH . C 3 HOH A 139 266 105 HOH HOH . C 3 HOH A 140 267 106 HOH HOH . C 3 HOH A 141 268 107 HOH HOH . C 3 HOH A 142 269 108 HOH HOH . C 3 HOH A 143 270 109 HOH HOH . C 3 HOH A 144 271 110 HOH HOH . C 3 HOH A 145 272 111 HOH HOH . C 3 HOH A 146 273 112 HOH HOH . C 3 HOH A 147 274 113 HOH HOH . C 3 HOH A 148 275 114 HOH HOH . C 3 HOH A 149 276 115 HOH HOH . C 3 HOH A 150 277 116 HOH HOH . C 3 HOH A 151 278 117 HOH HOH . C 3 HOH A 152 279 118 HOH HOH . C 3 HOH A 153 280 119 HOH HOH . C 3 HOH A 154 281 120 HOH HOH . C 3 HOH A 155 282 121 HOH HOH . C 3 HOH A 156 283 122 HOH HOH . C 3 HOH A 157 284 123 HOH HOH . C 3 HOH A 158 285 124 HOH HOH . C 3 HOH A 159 286 125 HOH HOH . C 3 HOH A 160 287 126 HOH HOH . C 3 HOH A 161 288 127 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O5' ADN . . . B 2 10.775 8.449 59.498 0.7 22.36 ? O5' ADN 127 A 1 HETATM 2 C C5' ADN . . . B 2 10.637 8.685 58.097 0.7 21.84 ? C5' ADN 127 A 1 HETATM 3 C C4' ADN . . . B 2 9.366 9.454 57.979 0.7 18.6 ? C4' ADN 127 A 1 HETATM 4 O O4' ADN . . . B 2 9.363 10.151 56.768 0.7 18.64 ? O4' ADN 127 A 1 HETATM 5 C C3' ADN . . . B 2 8.011 8.733 57.905 0.7 6.2 ? C3' ADN 127 A 1 HETATM 6 O O3' ADN . . . B 2 7.232 9.093 59.143 0.7 14.59 ? O3' ADN 127 A 1 HETATM 7 C C2' ADN . . . B 2 7.433 8.95 56.524 0.7 17.47 ? C2' ADN 127 A 1 HETATM 8 O O2' ADN . . . B 2 6.098 8.819 56.497 0.7 18.36 ? O2' ADN 127 A 1 HETATM 9 C C1' ADN . . . B 2 8.072 10.305 56.295 0.7 16.54 ? C1' ADN 127 A 1 HETATM 10 N N9 ADN . . . B 2 8.261 10.468 54.822 0.7 19.4 ? N9 ADN 127 A 1 HETATM 11 C C8 ADN . . . B 2 8.796 9.631 53.868 0.7 20.05 ? C8 ADN 127 A 1 HETATM 12 N N7 ADN . . . B 2 8.809 10.29 52.738 0.7 20.67 ? N7 ADN 127 A 1 HETATM 13 C C5 ADN . . . B 2 8.252 11.527 52.876 0.7 20.88 ? C5 ADN 127 A 1 HETATM 14 C C6 ADN . . . B 2 7.915 12.713 52.021 0.7 22.06 ? C6 ADN 127 A 1 HETATM 15 N N6 ADN . . . B 2 8.132 12.766 50.698 0.7 27.1 ? N6 ADN 127 A 1 HETATM 16 N N1 ADN . . . B 2 7.333 13.785 52.652 0.7 25.56 ? N1 ADN 127 A 1 HETATM 17 C C2 ADN . . . B 2 7.002 13.745 53.956 0.7 22.36 ? C2 ADN 127 A 1 HETATM 18 N N3 ADN . . . B 2 7.276 12.734 54.889 0.7 17.71 ? N3 ADN 127 A 1 HETATM 19 C C4 ADN . . . B 2 7.867 11.635 54.282 0.7 21.02 ? C4 ADN 127 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 315 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 19 #