data_3QH3 # _model_server_result.job_id Te_dBDlLkH6fHzpnFd1n_Q _model_server_result.datetime_utc '2024-11-02 17:29:06' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3qh3 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"L","auth_seq_id":249}' # _entry.id 3QH3 # _exptl.entry_id 3QH3 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 10 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 105.05 _cell.angle_gamma 90 _cell.entry_id 3QH3 _cell.length_a 91.247 _cell.length_b 51.735 _cell.length_c 96.336 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3QH3 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,E,F,G,H,I,J,K,L,T,U 1 1 C,D,M,N,O,P,Q,R,S,V,W 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 F N N ? 3 G N N ? 3 J N N ? 3 K N N ? 3 L N N ? 3 M N N ? 3 O N N ? 3 R N N ? 3 S N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 22 A CYS 22 1_555 A SG CYS 88 A CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.002 ? disulf ? disulf2 A SG CYS 133 A CYS 133 1_555 A SG CYS 183 A CYS 183 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? disulf ? disulf3 A SG CYS 158 A CYS 158 1_555 B SG CYS 172 B CYS 172 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.062 ? disulf ? disulf4 B SG CYS 23 B CYS 23 1_555 B SG CYS 91 B CYS 91 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.995 ? disulf ? disulf5 B SG CYS 146 B CYS 146 1_555 B SG CYS 211 B CYS 211 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.997 ? disulf ? disulf6 C SG CYS 22 C CYS 22 1_555 C SG CYS 88 C CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.068 ? disulf ? disulf7 C SG CYS 133 C CYS 133 1_555 C SG CYS 183 C CYS 183 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.065 ? disulf ? disulf8 C SG CYS 158 C CYS 158 1_555 D SG CYS 172 D CYS 172 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.127 ? disulf ? disulf9 D SG CYS 23 D CYS 23 1_555 D SG CYS 91 D CYS 91 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.979 ? disulf ? disulf10 D SG CYS 146 D CYS 146 1_555 D SG CYS 211 D CYS 211 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.91 ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # _atom_sites.entry_id 3QH3 _atom_sites.fract_transf_matrix[1][1] 0.010959 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002947 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.019329 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010749 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 EDO A 1 195 4 EDO EDO . F 3 EDO A 1 196 5 EDO EDO . G 3 EDO A 1 197 8 EDO EDO . H 4 GOL A 1 198 14 GOL GOL . I 4 GOL B 1 246 1 GOL GOL . J 3 EDO B 1 247 6 EDO EDO . K 3 EDO B 1 248 7 EDO EDO . L 3 EDO B 1 249 11 EDO EDO . M 3 EDO C 1 195 3 EDO EDO . N 4 GOL C 1 196 13 GOL GOL . O 3 EDO C 1 197 15 EDO EDO . P 4 GOL D 1 246 2 GOL GOL . Q 4 GOL D 1 247 9 GOL GOL . R 3 EDO D 1 248 10 EDO EDO . S 3 EDO D 1 249 12 EDO EDO . T 5 HOH A 1 199 1 HOH HOH . T 5 HOH A 2 200 7 HOH HOH . T 5 HOH A 3 201 8 HOH HOH . T 5 HOH A 4 202 9 HOH HOH . T 5 HOH A 5 203 11 HOH HOH . T 5 HOH A 6 204 12 HOH HOH . T 5 HOH A 7 205 14 HOH HOH . T 5 HOH A 8 206 17 HOH HOH . T 5 HOH A 9 207 18 HOH HOH . T 5 HOH A 10 208 19 HOH HOH . T 5 HOH A 11 209 22 HOH HOH . T 5 HOH A 12 210 25 HOH HOH . T 5 HOH A 13 211 27 HOH HOH . T 5 HOH A 14 212 31 HOH HOH . T 5 HOH A 15 213 32 HOH HOH . T 5 HOH A 16 214 35 HOH HOH . T 5 HOH A 17 215 36 HOH HOH . T 5 HOH A 18 216 37 HOH HOH . T 5 HOH A 19 217 38 HOH HOH . T 5 HOH A 20 218 40 HOH HOH . T 5 HOH A 21 219 48 HOH HOH . T 5 HOH A 22 220 49 HOH HOH . T 5 HOH A 23 221 51 HOH HOH . T 5 HOH A 24 222 53 HOH HOH . T 5 HOH A 25 223 55 HOH HOH . T 5 HOH A 26 224 56 HOH HOH . T 5 HOH A 27 225 59 HOH HOH . T 5 HOH A 28 226 60 HOH HOH . T 5 HOH A 29 227 61 HOH HOH . T 5 HOH A 30 228 62 HOH HOH . T 5 HOH A 31 229 66 HOH HOH . T 5 HOH A 32 230 67 HOH HOH . T 5 HOH A 33 231 68 HOH HOH . T 5 HOH A 34 232 71 HOH HOH . T 5 HOH A 35 233 72 HOH HOH . T 5 HOH A 36 234 73 HOH HOH . T 5 HOH A 37 235 74 HOH HOH . T 5 HOH A 38 236 75 HOH HOH . T 5 HOH A 39 237 80 HOH HOH . T 5 HOH A 40 238 82 HOH HOH . T 5 HOH A 41 239 88 HOH HOH . T 5 HOH A 42 240 89 HOH HOH . T 5 HOH A 43 241 91 HOH HOH . T 5 HOH A 44 242 92 HOH HOH . T 5 HOH A 45 243 93 HOH HOH . T 5 HOH A 46 244 101 HOH HOH . T 5 HOH A 47 245 102 HOH HOH . T 5 HOH A 48 246 103 HOH HOH . T 5 HOH A 49 247 105 HOH HOH . T 5 HOH A 50 248 106 HOH HOH . T 5 HOH A 51 249 108 HOH HOH . T 5 HOH A 52 250 163 HOH HOH . U 5 HOH B 1 250 2 HOH HOH . U 5 HOH B 2 251 3 HOH HOH . U 5 HOH B 3 252 4 HOH HOH . U 5 HOH B 4 253 5 HOH HOH . U 5 HOH B 5 254 6 HOH HOH . U 5 HOH B 6 255 10 HOH HOH . U 5 HOH B 7 256 13 HOH HOH . U 5 HOH B 8 257 15 HOH HOH . U 5 HOH B 9 258 16 HOH HOH . U 5 HOH B 10 259 20 HOH HOH . U 5 HOH B 11 260 21 HOH HOH . U 5 HOH B 12 261 23 HOH HOH . U 5 HOH B 13 262 24 HOH HOH . U 5 HOH B 14 263 26 HOH HOH . U 5 HOH B 15 264 28 HOH HOH . U 5 HOH B 16 265 29 HOH HOH . U 5 HOH B 17 266 30 HOH HOH . U 5 HOH B 18 267 33 HOH HOH . U 5 HOH B 19 268 34 HOH HOH . U 5 HOH B 20 269 39 HOH HOH . U 5 HOH B 21 270 41 HOH HOH . U 5 HOH B 22 271 42 HOH HOH . U 5 HOH B 23 272 43 HOH HOH . U 5 HOH B 24 273 44 HOH HOH . U 5 HOH B 25 274 45 HOH HOH . U 5 HOH B 26 275 46 HOH HOH . U 5 HOH B 27 276 47 HOH HOH . U 5 HOH B 28 277 50 HOH HOH . U 5 HOH B 29 278 52 HOH HOH . U 5 HOH B 30 279 54 HOH HOH . U 5 HOH B 31 280 57 HOH HOH . U 5 HOH B 32 281 58 HOH HOH . U 5 HOH B 33 282 63 HOH HOH . U 5 HOH B 34 283 64 HOH HOH . U 5 HOH B 35 284 65 HOH HOH . U 5 HOH B 36 285 69 HOH HOH . U 5 HOH B 37 286 70 HOH HOH . U 5 HOH B 38 287 76 HOH HOH . U 5 HOH B 39 288 77 HOH HOH . U 5 HOH B 40 289 78 HOH HOH . U 5 HOH B 41 290 79 HOH HOH . U 5 HOH B 42 291 81 HOH HOH . U 5 HOH B 43 292 83 HOH HOH . U 5 HOH B 44 293 84 HOH HOH . U 5 HOH B 45 294 85 HOH HOH . U 5 HOH B 46 295 86 HOH HOH . U 5 HOH B 47 296 87 HOH HOH . U 5 HOH B 48 297 182 HOH HOH . U 5 HOH B 49 298 94 HOH HOH . U 5 HOH B 50 299 95 HOH HOH . U 5 HOH B 51 300 96 HOH HOH . U 5 HOH B 52 301 97 HOH HOH . U 5 HOH B 53 302 98 HOH HOH . U 5 HOH B 54 303 99 HOH HOH . U 5 HOH B 55 304 100 HOH HOH . U 5 HOH B 56 305 104 HOH HOH . U 5 HOH B 57 306 107 HOH HOH . U 5 HOH B 58 307 109 HOH HOH . U 5 HOH B 59 308 110 HOH HOH . U 5 HOH B 60 309 111 HOH HOH . U 5 HOH B 61 310 112 HOH HOH . U 5 HOH B 62 311 113 HOH HOH . U 5 HOH B 63 312 114 HOH HOH . V 5 HOH C 1 198 117 HOH HOH . V 5 HOH C 2 199 199 HOH HOH . V 5 HOH C 3 200 200 HOH HOH . V 5 HOH C 4 201 121 HOH HOH . V 5 HOH C 5 202 202 HOH HOH . V 5 HOH C 6 203 203 HOH HOH . V 5 HOH C 7 204 122 HOH HOH . V 5 HOH C 8 205 123 HOH HOH . V 5 HOH C 9 206 206 HOH HOH . V 5 HOH C 10 207 126 HOH HOH . V 5 HOH C 11 208 208 HOH HOH . V 5 HOH C 12 209 209 HOH HOH . V 5 HOH C 13 210 132 HOH HOH . V 5 HOH C 14 211 133 HOH HOH . V 5 HOH C 15 212 212 HOH HOH . V 5 HOH C 16 213 136 HOH HOH . V 5 HOH C 17 214 140 HOH HOH . V 5 HOH C 18 215 142 HOH HOH . V 5 HOH C 19 216 146 HOH HOH . V 5 HOH C 20 217 147 HOH HOH . V 5 HOH C 21 218 149 HOH HOH . V 5 HOH C 22 219 155 HOH HOH . V 5 HOH C 23 220 220 HOH HOH . V 5 HOH C 24 221 156 HOH HOH . V 5 HOH C 25 222 222 HOH HOH . V 5 HOH C 26 223 223 HOH HOH . V 5 HOH C 27 224 158 HOH HOH . V 5 HOH C 28 225 160 HOH HOH . V 5 HOH C 29 226 161 HOH HOH . V 5 HOH C 30 227 227 HOH HOH . V 5 HOH C 31 228 162 HOH HOH . V 5 HOH C 32 229 164 HOH HOH . V 5 HOH C 33 230 167 HOH HOH . V 5 HOH C 34 231 169 HOH HOH . V 5 HOH C 35 232 171 HOH HOH . V 5 HOH C 36 233 174 HOH HOH . V 5 HOH C 37 234 178 HOH HOH . V 5 HOH C 38 235 179 HOH HOH . V 5 HOH C 39 236 188 HOH HOH . V 5 HOH C 40 237 193 HOH HOH . V 5 HOH C 41 238 238 HOH HOH . V 5 HOH C 42 240 240 HOH HOH . V 5 HOH C 43 242 242 HOH HOH . V 5 HOH C 44 245 245 HOH HOH . V 5 HOH C 45 248 248 HOH HOH . V 5 HOH C 46 249 249 HOH HOH . V 5 HOH C 47 250 250 HOH HOH . V 5 HOH C 48 254 254 HOH HOH . V 5 HOH C 49 255 255 HOH HOH . V 5 HOH C 50 256 256 HOH HOH . V 5 HOH C 51 297 90 HOH HOH . W 5 HOH D 1 250 115 HOH HOH . W 5 HOH D 2 251 251 HOH HOH . W 5 HOH D 3 252 252 HOH HOH . W 5 HOH D 4 253 253 HOH HOH . W 5 HOH D 5 254 116 HOH HOH . W 5 HOH D 6 255 118 HOH HOH . W 5 HOH D 7 256 119 HOH HOH . W 5 HOH D 8 257 120 HOH HOH . W 5 HOH D 9 258 124 HOH HOH . W 5 HOH D 10 259 125 HOH HOH . W 5 HOH D 11 260 127 HOH HOH . W 5 HOH D 12 261 128 HOH HOH . W 5 HOH D 13 262 129 HOH HOH . W 5 HOH D 14 263 130 HOH HOH . W 5 HOH D 15 264 131 HOH HOH . W 5 HOH D 16 265 134 HOH HOH . W 5 HOH D 17 266 135 HOH HOH . W 5 HOH D 18 267 137 HOH HOH . W 5 HOH D 19 268 138 HOH HOH . W 5 HOH D 20 269 139 HOH HOH . W 5 HOH D 21 270 141 HOH HOH . W 5 HOH D 22 271 143 HOH HOH . W 5 HOH D 23 272 144 HOH HOH . W 5 HOH D 24 273 145 HOH HOH . W 5 HOH D 25 274 148 HOH HOH . W 5 HOH D 26 275 150 HOH HOH . W 5 HOH D 27 276 151 HOH HOH . W 5 HOH D 28 277 152 HOH HOH . W 5 HOH D 29 278 153 HOH HOH . W 5 HOH D 30 279 154 HOH HOH . W 5 HOH D 31 280 157 HOH HOH . W 5 HOH D 32 281 159 HOH HOH . W 5 HOH D 33 282 165 HOH HOH . W 5 HOH D 34 283 166 HOH HOH . W 5 HOH D 35 284 168 HOH HOH . W 5 HOH D 36 285 170 HOH HOH . W 5 HOH D 37 286 172 HOH HOH . W 5 HOH D 38 287 173 HOH HOH . W 5 HOH D 39 288 175 HOH HOH . W 5 HOH D 40 289 176 HOH HOH . W 5 HOH D 41 290 177 HOH HOH . W 5 HOH D 42 291 180 HOH HOH . W 5 HOH D 43 292 181 HOH HOH . W 5 HOH D 44 294 183 HOH HOH . W 5 HOH D 45 295 184 HOH HOH . W 5 HOH D 46 296 185 HOH HOH . W 5 HOH D 47 297 186 HOH HOH . W 5 HOH D 48 298 187 HOH HOH . W 5 HOH D 49 299 189 HOH HOH . W 5 HOH D 50 300 190 HOH HOH . W 5 HOH D 51 301 191 HOH HOH . W 5 HOH D 52 302 192 HOH HOH . W 5 HOH D 53 303 194 HOH HOH . W 5 HOH D 54 304 195 HOH HOH . W 5 HOH D 55 305 196 HOH HOH . W 5 HOH D 56 306 197 HOH HOH . W 5 HOH D 57 307 198 HOH HOH . W 5 HOH D 58 308 201 HOH HOH . W 5 HOH D 59 309 204 HOH HOH . W 5 HOH D 60 310 205 HOH HOH . W 5 HOH D 61 311 207 HOH HOH . W 5 HOH D 62 312 210 HOH HOH . W 5 HOH D 63 313 211 HOH HOH . W 5 HOH D 64 314 213 HOH HOH . W 5 HOH D 65 315 214 HOH HOH . W 5 HOH D 66 316 215 HOH HOH . W 5 HOH D 67 317 216 HOH HOH . W 5 HOH D 68 318 217 HOH HOH . W 5 HOH D 69 319 218 HOH HOH . W 5 HOH D 70 320 219 HOH HOH . W 5 HOH D 71 321 221 HOH HOH . W 5 HOH D 72 322 224 HOH HOH . W 5 HOH D 73 323 225 HOH HOH . W 5 HOH D 74 324 226 HOH HOH . W 5 HOH D 75 325 228 HOH HOH . W 5 HOH D 76 326 229 HOH HOH . W 5 HOH D 77 327 230 HOH HOH . W 5 HOH D 78 328 231 HOH HOH . W 5 HOH D 79 329 232 HOH HOH . W 5 HOH D 80 330 233 HOH HOH . W 5 HOH D 81 331 234 HOH HOH . W 5 HOH D 82 332 235 HOH HOH . W 5 HOH D 83 333 236 HOH HOH . W 5 HOH D 84 334 237 HOH HOH . W 5 HOH D 85 335 239 HOH HOH . W 5 HOH D 86 336 241 HOH HOH . W 5 HOH D 87 337 243 HOH HOH . W 5 HOH D 88 338 244 HOH HOH . W 5 HOH D 89 339 246 HOH HOH . W 5 HOH D 90 340 247 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . L 3 29.756 28.555 64.241 1 41.49 ? C1 EDO 249 B 1 HETATM 2 O O1 EDO . . . L 3 29.323 29.928 64.384 1 40.71 ? O1 EDO 249 B 1 HETATM 3 C C2 EDO . . . L 3 29.746 27.977 62.824 1 42.02 ? C2 EDO 249 B 1 HETATM 4 O O2 EDO . . . L 3 30.858 27.043 62.609 1 45.43 ? O2 EDO 249 B 1 # _model_server_stats.io_time_ms 23 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 18 _model_server_stats.query_time_ms 319 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 4 #