data_3QI4 # _model_server_result.job_id 0fOmwCn9JY2gXdogd129lw _model_server_result.datetime_utc '2024-11-25 12:32:33' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3qi4 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":534}' # _entry.id 3QI4 # _exptl.entry_id 3QI4 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 222.244 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 3-ISOBUTYL-1-METHYLXANTHINE _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3QI4 _cell.length_a 103.409 _cell.length_b 103.409 _cell.length_c 269.95 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3QI4 _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 256 A HIS 256 1_555 D ZN ZN . A ZN 535 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.133 ? metalc ? metalc2 A NE2 HIS 292 A HIS 292 1_555 D ZN ZN . A ZN 535 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.115 ? metalc ? metalc3 A OD2 ASP 293 A ASP 293 1_555 D ZN ZN . A ZN 535 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.061 ? metalc ? metalc4 A OD1 ASP 293 A ASP 293 1_555 E MG MG . A MG 536 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.104 ? metalc ? metalc5 A OD2 ASP 293 A ASP 293 1_555 E MG MG . A MG 536 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.971 ? metalc ? metalc6 A OD1 ASP 402 A ASP 402 1_555 D ZN ZN . A ZN 535 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.07 ? metalc ? metalc7 D ZN ZN . A ZN 535 1_555 I O HOH . A HOH 537 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.589 ? metalc ? metalc8 E MG MG . A MG 536 1_555 I O HOH . A HOH 538 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.54 ? metalc ? metalc9 E MG MG . A MG 536 1_555 I O HOH . A HOH 539 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.714 ? metalc ? metalc10 E MG MG . A MG 536 1_555 I O HOH . A HOH 540 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.484 ? metalc ? metalc11 E MG MG . A MG 536 1_555 I O HOH . A HOH 541 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.482 ? metalc ? metalc12 E MG MG . A MG 536 1_555 I O HOH . A HOH 542 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.66 ? metalc ? metalc13 B NE2 HIS 256 B HIS 256 1_555 G ZN ZN . B ZN 535 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.139 ? metalc ? metalc14 B NE2 HIS 292 B HIS 292 1_555 G ZN ZN . B ZN 535 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.112 ? metalc ? metalc15 B OD2 ASP 293 B ASP 293 1_555 G ZN ZN . B ZN 535 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.057 ? metalc ? metalc16 B OD1 ASP 293 B ASP 293 1_555 H MG MG . B MG 536 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.114 ? metalc ? metalc17 B OD1 ASP 402 B ASP 402 1_555 G ZN ZN . B ZN 535 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.064 ? metalc ? metalc18 H MG MG . B MG 536 1_555 J O HOH . B HOH 538 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.706 ? metalc ? metalc19 H MG MG . B MG 536 1_555 J O HOH . B HOH 539 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.444 ? metalc ? metalc20 H MG MG . B MG 536 1_555 J O HOH . B HOH 540 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.451 ? metalc ? metalc21 H MG MG . B MG 536 1_555 J O HOH . B HOH 541 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.583 ? metalc ? metalc22 H MG MG . B MG 536 1_555 J O HOH . B HOH 542 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.71 ? # _chem_comp.formula 'C10 H14 N4 O2' _chem_comp.formula_weight 222.244 _chem_comp.id IBM _chem_comp.mon_nstd_flag . _chem_comp.name 3-ISOBUTYL-1-METHYLXANTHINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N9 C8 IBM sing 152 n y N9 C4 IBM sing 153 n y N9 HN9 IBM sing 154 n n C8 N7 IBM doub 155 n y C8 H8 IBM sing 156 n n N7 C5 IBM sing 157 n y C5 C4 IBM doub 158 n y C5 C6 IBM sing 159 n y C4 N3 IBM sing 160 n y N3 C2 IBM sing 161 n y N3 C11 IBM sing 162 n n C2 N1 IBM sing 163 n y C2 O2 IBM doub 164 n n N1 C6 IBM sing 165 n y N1 C10 IBM sing 166 n n C6 O6 IBM doub 167 n n C10 H101 IBM sing 168 n n C10 H102 IBM sing 169 n n C10 H103 IBM sing 170 n n C11 C12 IBM sing 171 n n C11 H111 IBM sing 172 n n C11 H112 IBM sing 173 n n C12 C13 IBM sing 174 n n C12 C14 IBM sing 175 n n C12 H12 IBM sing 176 n n C13 H131 IBM sing 177 n n C13 H132 IBM sing 178 n n C13 H133 IBM sing 179 n n C14 H141 IBM sing 180 n n C14 H142 IBM sing 181 n n C14 H143 IBM sing 182 n n # _atom_sites.entry_id 3QI4 _atom_sites.fract_transf_matrix[1][1] 0.00967 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00967 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003704 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 IBM A 1 534 1 IBM IBM . D 3 ZN A 1 535 101 ZN ZN . E 4 MG A 1 536 102 MG MG . F 2 IBM B 1 534 1 IBM IBM . G 3 ZN B 1 535 101 ZN ZN . H 4 MG B 1 536 102 MG MG . I 5 HOH A 1 537 1 HOH TIP . I 5 HOH A 2 538 2 HOH TIP . I 5 HOH A 3 539 3 HOH TIP . I 5 HOH A 4 540 4 HOH TIP . I 5 HOH A 5 541 5 HOH TIP . I 5 HOH A 6 542 6 HOH TIP . I 5 HOH A 7 543 7 HOH TIP . I 5 HOH A 8 544 8 HOH TIP . I 5 HOH A 9 545 9 HOH TIP . I 5 HOH A 10 546 10 HOH TIP . I 5 HOH A 11 547 19 HOH TIP . I 5 HOH A 12 548 20 HOH TIP . I 5 HOH A 13 549 27 HOH TIP . I 5 HOH A 14 550 28 HOH TIP . I 5 HOH A 15 551 29 HOH TIP . J 5 HOH B 1 537 11 HOH TIP . J 5 HOH B 2 538 12 HOH TIP . J 5 HOH B 3 539 13 HOH TIP . J 5 HOH B 4 540 14 HOH TIP . J 5 HOH B 5 541 15 HOH TIP . J 5 HOH B 6 542 16 HOH TIP . J 5 HOH B 7 543 17 HOH TIP . J 5 HOH B 8 544 18 HOH TIP . J 5 HOH B 9 545 21 HOH TIP . J 5 HOH B 10 546 22 HOH TIP . J 5 HOH B 11 547 23 HOH TIP . J 5 HOH B 12 548 24 HOH TIP . J 5 HOH B 13 549 25 HOH TIP . J 5 HOH B 14 550 26 HOH TIP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N9 IBM . . . C 2 74.112 52.547 40.818 1 58.57 ? N9 IBM 534 A 1 HETATM 2 C C8 IBM . . . C 2 73.311 53.228 41.703 1 58.95 ? C8 IBM 534 A 1 HETATM 3 N N7 IBM . . . C 2 73.713 53.147 42.948 1 58.27 ? N7 IBM 534 A 1 HETATM 4 C C5 IBM . . . C 2 74.855 52.361 42.878 1 57.9 ? C5 IBM 534 A 1 HETATM 5 C C4 IBM . . . C 2 75.116 51.986 41.572 1 58.02 ? C4 IBM 534 A 1 HETATM 6 N N3 IBM . . . C 2 76.15 51.238 41.122 1 57.84 ? N3 IBM 534 A 1 HETATM 7 C C2 IBM . . . C 2 77.005 50.812 42.095 1 57.74 ? C2 IBM 534 A 1 HETATM 8 N N1 IBM . . . C 2 76.824 51.142 43.449 1 58.54 ? N1 IBM 534 A 1 HETATM 9 C C6 IBM . . . C 2 75.751 51.914 43.841 1 58.74 ? C6 IBM 534 A 1 HETATM 10 O O6 IBM . . . C 2 75.581 52.199 45.032 1 58.17 ? O6 IBM 534 A 1 HETATM 11 O O2 IBM . . . C 2 77.968 50.126 41.771 1 58.13 ? O2 IBM 534 A 1 HETATM 12 C C10 IBM . . . C 2 77.784 50.672 44.446 1 57.82 ? C10 IBM 534 A 1 HETATM 13 C C11 IBM . . . C 2 76.385 50.956 39.701 1 57.84 ? C11 IBM 534 A 1 HETATM 14 C C12 IBM . . . C 2 75.087 50.555 38.993 1 59.83 ? C12 IBM 534 A 1 HETATM 15 C C13 IBM . . . C 2 75.404 49.424 38.014 1 60.15 ? C13 IBM 534 A 1 HETATM 16 C C14 IBM . . . C 2 74.495 51.732 38.222 1 57.73 ? C14 IBM 534 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 272 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 16 #