data_3QI9 # _model_server_result.job_id HbsDc_glq4CsLNZKdPFePA _model_server_result.datetime_utc '2024-10-12 10:19:18' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3qi9 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":406}' # _entry.id 3QI9 # _exptl.entry_id 3QI9 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 24.305 _entity.id 8 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MAGNESIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3QI9 _cell.length_a 95.697 _cell.length_b 95.697 _cell.length_c 289.71 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3QI9 _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 8 _struct_asym.id I _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _pdbx_entity_branch.entity_id 5 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 5 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_1 NAG _pdbx_entity_branch_link.comp_id_2 NAG _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O4 _pdbx_entity_branch_link.leaving_atom_id_2 HO4 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 5 n E NAG 1 E 1 NAG A 305 NAG 5 n E NAG 2 E 2 NAG A 306 NAG # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 104 A CYS 104 1_555 A SG CYS 168 A CYS 168 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.049 ? disulf ? disulf2 A SG CYS 208 A CYS 208 1_555 A SG CYS 263 A CYS 263 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? disulf ? disulf3 B SG CYS 25 B CYS 25 1_555 B SG CYS 80 B CYS 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf4 C SG CYS 22 C CYS 22 1_555 C SG CYS 89 C CYS 90 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf5 C SG CYS 136 C CYS 139 1_555 C SG CYS 186 C CYS 189 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.334 ? disulf ? disulf6 C SG CYS 161 C CYS 164 1_555 D SG CYS 170 D CYS 174 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.574 ? disulf ? disulf7 D SG CYS 23 D CYS 23 1_555 D SG CYS 91 D CYS 91 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf8 D SG CYS 144 D CYS 148 1_555 D SG CYS 209 D CYS 213 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? covale ? covale1 A ND2 ASN 20 A ASN 20 1_555 F C1 NAG . A NAG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.361 ? covale ? covale2 A ND2 ASN 42 A ASN 42 1_555 G C1 NAG . A NAG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.445 ? covale ? covale3 A ND2 ASN 165 A ASN 165 1_555 E C1 NAG . E NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? covale ? covale4 E O4 NAG . E NAG 1 1_555 E C1 NAG . E NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.458 ? # _chem_comp.formula 'Mg 2' _chem_comp.formula_weight 24.305 _chem_comp.id MG _chem_comp.mon_nstd_flag . _chem_comp.name 'MAGNESIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 3QI9 _atom_sites.fract_transf_matrix[1][1] 0.01045 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01045 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003452 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code F 6 NAG A 1 401 303 NAG NAG . G 6 NAG A 1 402 304 NAG NAG . H 7 PII A 1 405 1 PII PII . I 8 MG A 1 406 1 MG MG . J 9 GOL B 1 100 100 GOL GOL . K 9 GOL D 1 300 300 GOL GOL . L 10 HOH A 1 501 163 HOH HOH . L 10 HOH A 2 502 164 HOH HOH . L 10 HOH A 3 503 165 HOH HOH . L 10 HOH A 4 504 169 HOH HOH . L 10 HOH A 5 505 170 HOH HOH . L 10 HOH A 6 506 171 HOH HOH . L 10 HOH A 7 507 173 HOH HOH . L 10 HOH A 8 508 174 HOH HOH . L 10 HOH A 9 509 175 HOH HOH . L 10 HOH A 10 510 176 HOH HOH . L 10 HOH A 11 511 179 HOH HOH . L 10 HOH A 12 512 180 HOH HOH . L 10 HOH A 13 513 181 HOH HOH . L 10 HOH A 14 514 182 HOH HOH . L 10 HOH A 15 515 183 HOH HOH . L 10 HOH A 16 516 188 HOH HOH . L 10 HOH A 17 517 189 HOH HOH . L 10 HOH A 18 518 193 HOH HOH . L 10 HOH A 19 519 195 HOH HOH . L 10 HOH A 20 520 196 HOH HOH . L 10 HOH A 21 521 197 HOH HOH . L 10 HOH A 22 522 198 HOH HOH . L 10 HOH A 23 523 199 HOH HOH . L 10 HOH A 24 524 200 HOH HOH . L 10 HOH A 25 525 201 HOH HOH . L 10 HOH A 26 526 211 HOH HOH . L 10 HOH A 27 527 242 HOH HOH . L 10 HOH A 28 528 244 HOH HOH . L 10 HOH A 29 529 246 HOH HOH . L 10 HOH A 30 530 249 HOH HOH . L 10 HOH A 31 531 9 HOH HOH . L 10 HOH A 32 532 11 HOH HOH . L 10 HOH A 33 533 15 HOH HOH . L 10 HOH A 34 534 18 HOH HOH . L 10 HOH A 35 535 21 HOH HOH . L 10 HOH A 36 536 22 HOH HOH . L 10 HOH A 37 537 24 HOH HOH . L 10 HOH A 38 538 26 HOH HOH . L 10 HOH A 39 539 35 HOH HOH . L 10 HOH A 40 540 36 HOH HOH . L 10 HOH A 41 541 52 HOH HOH . L 10 HOH A 42 542 53 HOH HOH . L 10 HOH A 43 543 62 HOH HOH . L 10 HOH A 44 544 63 HOH HOH . L 10 HOH A 45 545 68 HOH HOH . L 10 HOH A 46 546 78 HOH HOH . L 10 HOH A 47 547 79 HOH HOH . L 10 HOH A 48 548 84 HOH HOH . L 10 HOH A 49 549 98 HOH HOH . L 10 HOH A 50 550 104 HOH HOH . L 10 HOH A 51 551 106 HOH HOH . L 10 HOH A 52 552 110 HOH HOH . L 10 HOH A 53 553 112 HOH HOH . L 10 HOH A 54 554 115 HOH HOH . L 10 HOH A 55 555 116 HOH HOH . L 10 HOH A 56 556 124 HOH HOH . L 10 HOH A 57 557 127 HOH HOH . L 10 HOH A 58 558 133 HOH HOH . L 10 HOH A 59 559 158 HOH HOH . L 10 HOH A 60 560 160 HOH HOH . L 10 HOH A 61 561 162 HOH HOH . L 10 HOH A 62 562 164 HOH HOH . L 10 HOH A 63 563 166 HOH HOH . L 10 HOH A 64 564 167 HOH HOH . L 10 HOH A 65 565 168 HOH HOH . L 10 HOH A 66 566 172 HOH HOH . L 10 HOH A 67 567 173 HOH HOH . L 10 HOH A 68 568 174 HOH HOH . M 10 HOH B 1 201 191 HOH HOH . M 10 HOH B 2 202 194 HOH HOH . M 10 HOH B 3 203 202 HOH HOH . M 10 HOH B 4 204 203 HOH HOH . M 10 HOH B 5 205 204 HOH HOH . M 10 HOH B 6 206 205 HOH HOH . M 10 HOH B 7 207 206 HOH HOH . M 10 HOH B 8 208 207 HOH HOH . M 10 HOH B 9 209 208 HOH HOH . M 10 HOH B 10 210 209 HOH HOH . M 10 HOH B 11 211 210 HOH HOH . M 10 HOH B 12 212 212 HOH HOH . M 10 HOH B 13 213 213 HOH HOH . M 10 HOH B 14 214 214 HOH HOH . M 10 HOH B 15 215 215 HOH HOH . M 10 HOH B 16 216 1 HOH HOH . M 10 HOH B 17 217 13 HOH HOH . M 10 HOH B 18 218 20 HOH HOH . M 10 HOH B 19 219 23 HOH HOH . M 10 HOH B 20 220 28 HOH HOH . M 10 HOH B 21 221 34 HOH HOH . M 10 HOH B 22 222 48 HOH HOH . M 10 HOH B 23 223 81 HOH HOH . M 10 HOH B 24 224 86 HOH HOH . M 10 HOH B 25 225 156 HOH HOH . M 10 HOH B 26 226 170 HOH HOH . N 10 HOH C 1 301 177 HOH HOH . N 10 HOH C 2 302 186 HOH HOH . N 10 HOH C 3 303 187 HOH HOH . N 10 HOH C 4 304 216 HOH HOH . N 10 HOH C 5 305 217 HOH HOH . N 10 HOH C 6 306 218 HOH HOH . N 10 HOH C 7 307 219 HOH HOH . N 10 HOH C 8 308 220 HOH HOH . N 10 HOH C 9 309 223 HOH HOH . N 10 HOH C 10 310 226 HOH HOH . N 10 HOH C 11 311 229 HOH HOH . N 10 HOH C 12 312 230 HOH HOH . N 10 HOH C 13 313 231 HOH HOH . N 10 HOH C 14 314 234 HOH HOH . N 10 HOH C 15 315 236 HOH HOH . N 10 HOH C 16 316 239 HOH HOH . N 10 HOH C 17 317 3 HOH HOH . N 10 HOH C 18 318 17 HOH HOH . N 10 HOH C 19 319 37 HOH HOH . N 10 HOH C 20 320 39 HOH HOH . N 10 HOH C 21 321 42 HOH HOH . N 10 HOH C 22 322 44 HOH HOH . N 10 HOH C 23 323 46 HOH HOH . N 10 HOH C 24 324 50 HOH HOH . N 10 HOH C 25 325 69 HOH HOH . N 10 HOH C 26 326 74 HOH HOH . N 10 HOH C 27 327 82 HOH HOH . N 10 HOH C 28 328 85 HOH HOH . N 10 HOH C 29 329 88 HOH HOH . N 10 HOH C 30 330 111 HOH HOH . N 10 HOH C 31 331 137 HOH HOH . N 10 HOH C 32 332 138 HOH HOH . N 10 HOH C 33 333 139 HOH HOH . N 10 HOH C 34 334 140 HOH HOH . N 10 HOH C 35 335 143 HOH HOH . N 10 HOH C 36 336 144 HOH HOH . N 10 HOH C 37 337 163 HOH HOH . N 10 HOH C 38 338 177 HOH HOH . O 10 HOH D 1 401 178 HOH HOH . O 10 HOH D 2 402 185 HOH HOH . O 10 HOH D 3 403 222 HOH HOH . O 10 HOH D 4 404 224 HOH HOH . O 10 HOH D 5 405 232 HOH HOH . O 10 HOH D 6 406 233 HOH HOH . O 10 HOH D 7 407 235 HOH HOH . O 10 HOH D 8 408 238 HOH HOH . O 10 HOH D 9 409 240 HOH HOH . O 10 HOH D 10 410 241 HOH HOH . O 10 HOH D 11 411 245 HOH HOH . O 10 HOH D 12 412 247 HOH HOH . O 10 HOH D 13 413 248 HOH HOH . O 10 HOH D 14 414 251 HOH HOH . O 10 HOH D 15 415 256 HOH HOH . O 10 HOH D 16 416 257 HOH HOH . O 10 HOH D 17 417 259 HOH HOH . O 10 HOH D 18 418 260 HOH HOH . O 10 HOH D 19 419 5 HOH HOH . O 10 HOH D 20 420 6 HOH HOH . O 10 HOH D 21 421 10 HOH HOH . O 10 HOH D 22 422 12 HOH HOH . O 10 HOH D 23 423 14 HOH HOH . O 10 HOH D 24 424 16 HOH HOH . O 10 HOH D 25 425 19 HOH HOH . O 10 HOH D 26 426 25 HOH HOH . O 10 HOH D 27 427 29 HOH HOH . O 10 HOH D 28 428 30 HOH HOH . O 10 HOH D 29 429 31 HOH HOH . O 10 HOH D 30 430 33 HOH HOH . O 10 HOH D 31 431 41 HOH HOH . O 10 HOH D 32 432 43 HOH HOH . O 10 HOH D 33 433 47 HOH HOH . O 10 HOH D 34 434 51 HOH HOH . O 10 HOH D 35 435 56 HOH HOH . O 10 HOH D 36 436 67 HOH HOH . O 10 HOH D 37 437 75 HOH HOH . O 10 HOH D 38 438 91 HOH HOH . O 10 HOH D 39 439 125 HOH HOH . O 10 HOH D 40 440 142 HOH HOH . O 10 HOH D 41 441 148 HOH HOH . O 10 HOH D 42 442 149 HOH HOH . O 10 HOH D 43 443 165 HOH HOH . O 10 HOH D 44 444 169 HOH HOH . O 10 HOH D 45 445 171 HOH HOH . O 10 HOH D 46 446 175 HOH HOH . O 10 HOH D 47 447 176 HOH HOH . O 10 HOH D 48 448 178 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MG _atom_site.label_atom_id MG _atom_site.label_comp_id MG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id I _atom_site.label_entity_id 8 _atom_site.Cartn_x 12.774 _atom_site.Cartn_y -142.653 _atom_site.Cartn_z -16.569 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 62.92 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MG _atom_site.auth_comp_id MG _atom_site.auth_seq_id 406 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 354 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 1 #