data_3QJV # _model_server_result.job_id tEl7q5Mr3UtPSlogJr5lwA _model_server_result.datetime_utc '2024-10-15 13:21:58' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3qjv # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":800}' # _entry.id 3QJV # _exptl.entry_id 3QJV _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 616.487 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PROTOPORPHYRIN IX CONTAINING FE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3QJV _cell.length_a 109.96 _cell.length_b 109.96 _cell.length_c 168.72 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3QJV _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 78 A HIS 72 1_555 E FE HEM . A HEM 800 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.085 ? metalc ? metalc2 A ND1 HIS 239 A HIS 233 1_555 D CU CU1 . A CU1 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.986 ? metalc ? metalc3 A NE2 HIS 288 A HIS 282 1_555 D CU CU1 . A CU1 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.966 ? metalc ? metalc4 A NE2 HIS 289 A HIS 283 1_555 D CU CU1 . A CU1 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.902 ? metalc ? metalc5 A NE2 HIS 390 A HIS 384 1_555 F FE HAS . A HAS 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.988 ? metalc ? metalc6 A NE2 HIS 392 A HIS 386 1_555 E FE HEM . A HEM 800 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.135 ? metalc ? metalc7 G O CMO . A CMO 563 1_555 F FE HAS . A HAS 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.361 ? metalc ? metalc8 B ND1 HIS 114 B HIS 114 1_555 H CU2 CUA . B CUA 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.006 ? metalc ? metalc9 B SG CYS 149 B CYS 149 1_555 H CU1 CUA . B CUA 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.119 ? metalc ? metalc10 B SG CYS 149 B CYS 149 1_555 H CU2 CUA . B CUA 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.301 ? metalc ? metalc11 B O GLN 151 B GLN 151 1_555 H CU1 CUA . B CUA 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.519 ? metalc ? metalc12 B SG CYS 153 B CYS 153 1_555 H CU1 CUA . B CUA 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.088 ? metalc ? metalc13 B SG CYS 153 B CYS 153 1_555 H CU2 CUA . B CUA 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.332 ? metalc ? metalc14 B ND1 HIS 157 B HIS 157 1_555 H CU1 CUA . B CUA 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.977 ? metalc ? metalc15 B SD MET 160 B MET 160 1_555 H CU2 CUA . B CUA 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.273 ? # _chem_comp.formula 'C34 H32 Fe N4 O4' _chem_comp.formula_weight 616.487 _chem_comp.id HEM _chem_comp.mon_nstd_flag . _chem_comp.name 'PROTOPORPHYRIN IX CONTAINING FE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEME # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CHA C1A HEM sing 267 n n CHA C4D HEM doub 268 n n CHA HHA HEM sing 269 n n CHB C4A HEM sing 270 n n CHB C1B HEM doub 271 n n CHB HHB HEM sing 272 n n CHC C4B HEM sing 273 n n CHC C1C HEM doub 274 n n CHC HHC HEM sing 275 n n CHD C4C HEM doub 276 n n CHD C1D HEM sing 277 n n CHD HHD HEM sing 278 n n C1A C2A HEM doub 279 n y C1A NA HEM sing 280 n y C2A C3A HEM sing 281 n y C2A CAA HEM sing 282 n n C3A C4A HEM doub 283 n y C3A CMA HEM sing 284 n n C4A NA HEM sing 285 n y CMA HMA HEM sing 286 n n CMA HMAA HEM sing 287 n n CMA HMAB HEM sing 288 n n CAA CBA HEM sing 289 n n CAA HAA HEM sing 290 n n CAA HAAA HEM sing 291 n n CBA CGA HEM sing 292 n n CBA HBA HEM sing 293 n n CBA HBAA HEM sing 294 n n CGA O1A HEM doub 295 n n CGA O2A HEM sing 296 n n C1B C2B HEM sing 297 n n C1B NB HEM sing 298 n n C2B C3B HEM doub 299 n n C2B CMB HEM sing 300 n n C3B C4B HEM sing 301 n n C3B CAB HEM sing 302 n n C4B NB HEM doub 303 n n CMB HMB HEM sing 304 n n CMB HMBA HEM sing 305 n n CMB HMBB HEM sing 306 n n CAB CBB HEM doub 307 n n CAB HAB HEM sing 308 n n CBB HBB HEM sing 309 n n CBB HBBA HEM sing 310 n n C1C C2C HEM sing 311 n y C1C NC HEM sing 312 n y C2C C3C HEM doub 313 n y C2C CMC HEM sing 314 n n C3C C4C HEM sing 315 n y C3C CAC HEM sing 316 n n C4C NC HEM sing 317 n y CMC HMC HEM sing 318 n n CMC HMCA HEM sing 319 n n CMC HMCB HEM sing 320 n n CAC CBC HEM doub 321 n n CAC HAC HEM sing 322 n n CBC HBC HEM sing 323 n n CBC HBCA HEM sing 324 n n C1D C2D HEM sing 325 n n C1D ND HEM doub 326 n n C2D C3D HEM doub 327 n n C2D CMD HEM sing 328 n n C3D C4D HEM sing 329 n n C3D CAD HEM sing 330 n n C4D ND HEM sing 331 n n CMD HMD HEM sing 332 n n CMD HMDA HEM sing 333 n n CMD HMDB HEM sing 334 n n CAD CBD HEM sing 335 n n CAD HAD HEM sing 336 n n CAD HADA HEM sing 337 n n CBD CGD HEM sing 338 n n CBD HBD HEM sing 339 n n CBD HBDA HEM sing 340 n n CGD O1D HEM doub 341 n n CGD O2D HEM sing 342 n n O2A H2A HEM sing 343 n n O2D H2D HEM sing 344 n n FE NA HEM sing 345 n n FE NB HEM sing 346 n n FE NC HEM sing 347 n n FE ND HEM sing 348 n n # _atom_sites.entry_id 3QJV _atom_sites.fract_transf_matrix[1][1] 0.009094 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009094 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005927 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 CU1 A 1 803 803 CU1 CU1 . E 5 HEM A 1 800 800 HEM HEM . F 6 HAS A 1 801 801 HAS HAS . G 7 CMO A 1 563 1 CMO CMO . H 8 CUA B 1 802 802 CUA CUA . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CHA HEM . . . E 5 19.728 -33.988 5.999 1 34.3 ? CHA HEM 800 A 1 HETATM 2 C CHB HEM . . . E 5 18.293 -38.169 4.22 1 35.18 ? CHB HEM 800 A 1 HETATM 3 C CHC HEM . . . E 5 22.211 -40.181 6.302 1 34.55 ? CHC HEM 800 A 1 HETATM 4 C CHD HEM . . . E 5 23.96 -35.858 7.351 1 33.33 ? CHD HEM 800 A 1 HETATM 5 C C1A HEM . . . E 5 19.022 -34.889 5.276 1 33.25 ? C1A HEM 800 A 1 HETATM 6 C C2A HEM . . . E 5 17.878 -34.595 4.405 1 33.44 ? C2A HEM 800 A 1 HETATM 7 C C3A HEM . . . E 5 17.475 -35.784 3.928 1 33.67 ? C3A HEM 800 A 1 HETATM 8 C C4A HEM . . . E 5 18.356 -36.811 4.474 1 35.12 ? C4A HEM 800 A 1 HETATM 9 C CMA HEM . . . E 5 16.311 -36.048 2.965 1 32.71 ? CMA HEM 800 A 1 HETATM 10 C CAA HEM . . . E 5 17.239 -33.202 4.116 1 31.51 ? CAA HEM 800 A 1 HETATM 11 C CBA HEM . . . E 5 16.443 -32.711 5.332 1 31.93 ? CBA HEM 800 A 1 HETATM 12 C CGA HEM . . . E 5 15.896 -31.313 5.143 1 33.59 ? CGA HEM 800 A 1 HETATM 13 O O1A HEM . . . E 5 14.891 -30.921 5.805 1 33.52 ? O1A HEM 800 A 1 HETATM 14 O O2A HEM . . . E 5 16.455 -30.547 4.317 1 34.95 ? O2A HEM 800 A 1 HETATM 15 C C1B HEM . . . E 5 19.216 -39.073 4.697 1 33.88 ? C1B HEM 800 A 1 HETATM 16 C C2B HEM . . . E 5 19.093 -40.514 4.616 1 34.95 ? C2B HEM 800 A 1 HETATM 17 C C3B HEM . . . E 5 20.18 -41.025 5.201 1 35.26 ? C3B HEM 800 A 1 HETATM 18 C C4B HEM . . . E 5 21.009 -39.955 5.665 1 35.44 ? C4B HEM 800 A 1 HETATM 19 C CMB HEM . . . E 5 17.928 -41.339 3.979 1 33.2 ? CMB HEM 800 A 1 HETATM 20 C CAB HEM . . . E 5 20.525 -42.509 5.398 1 35.88 ? CAB HEM 800 A 1 HETATM 21 C CBB HEM . . . E 5 19.705 -43.24 6.168 1 36.09 ? CBB HEM 800 A 1 HETATM 22 C C1C HEM . . . E 5 23.068 -39.204 6.678 1 33 ? C1C HEM 800 A 1 HETATM 23 C C2C HEM . . . E 5 24.424 -39.382 7.124 1 33.73 ? C2C HEM 800 A 1 HETATM 24 C C3C HEM . . . E 5 24.913 -38.163 7.411 1 33.66 ? C3C HEM 800 A 1 HETATM 25 C C4C HEM . . . E 5 23.861 -37.208 7.15 1 33.28 ? C4C HEM 800 A 1 HETATM 26 C CMC HEM . . . E 5 25.171 -40.733 7.258 1 32.68 ? CMC HEM 800 A 1 HETATM 27 C CAC HEM . . . E 5 26.333 -37.796 7.936 1 34.01 ? CAC HEM 800 A 1 HETATM 28 C CBC HEM . . . E 5 27.215 -38.686 8.418 1 32.3 ? CBC HEM 800 A 1 HETATM 29 C C1D HEM . . . E 5 22.948 -34.963 7.214 1 32.1 ? C1D HEM 800 A 1 HETATM 30 C C2D HEM . . . E 5 22.919 -33.607 7.717 1 32.81 ? C2D HEM 800 A 1 HETATM 31 C C3D HEM . . . E 5 21.586 -33.016 7.276 1 34.43 ? C3D HEM 800 A 1 HETATM 32 C C4D HEM . . . E 5 20.97 -34.122 6.565 1 34.7 ? C4D HEM 800 A 1 HETATM 33 C CMD HEM . . . E 5 23.98 -32.855 8.507 1 32.8 ? CMD HEM 800 A 1 HETATM 34 C CAD HEM . . . E 5 20.974 -31.606 7.477 1 34.43 ? CAD HEM 800 A 1 HETATM 35 C CBD HEM . . . E 5 20.71 -31.102 8.907 1 36.43 ? CBD HEM 800 A 1 HETATM 36 C CGD HEM . . . E 5 20.183 -29.653 8.814 1 37.54 ? CGD HEM 800 A 1 HETATM 37 O O1D HEM . . . E 5 19.805 -29.043 9.866 1 36.12 ? O1D HEM 800 A 1 HETATM 38 O O2D HEM . . . E 5 20.122 -29.102 7.656 1 36.88 ? O2D HEM 800 A 1 HETATM 39 N NA HEM . . . E 5 19.302 -36.222 5.31 1 33.42 ? NA HEM 800 A 1 HETATM 40 N NB HEM . . . E 5 20.395 -38.754 5.344 1 33.5 ? NB HEM 800 A 1 HETATM 41 N NC HEM . . . E 5 22.741 -37.877 6.704 1 33.1 ? NC HEM 800 A 1 HETATM 42 N ND HEM . . . E 5 21.788 -35.25 6.549 1 32.75 ? ND HEM 800 A 1 HETATM 43 FE FE HEM . . . E 5 21.057 -37.04 6.023 1 33.4 ? FE HEM 800 A 1 # _model_server_stats.io_time_ms 18 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 305 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 43 #