data_3QJV # _model_server_result.job_id lUknSN4WNZXDRke_VywEFw _model_server_result.datetime_utc '2024-10-15 13:14:24' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3qjv # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":801}' # _entry.id 3QJV # _exptl.entry_id 3QJV _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 920.954 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description HEME-AS _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3QJV _cell.length_a 109.96 _cell.length_b 109.96 _cell.length_c 168.72 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3QJV _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 6 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 78 A HIS 72 1_555 E FE HEM . A HEM 800 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.085 ? metalc ? metalc2 A ND1 HIS 239 A HIS 233 1_555 D CU CU1 . A CU1 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.986 ? metalc ? metalc3 A NE2 HIS 288 A HIS 282 1_555 D CU CU1 . A CU1 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.966 ? metalc ? metalc4 A NE2 HIS 289 A HIS 283 1_555 D CU CU1 . A CU1 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.902 ? metalc ? metalc5 A NE2 HIS 390 A HIS 384 1_555 F FE HAS . A HAS 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.988 ? metalc ? metalc6 A NE2 HIS 392 A HIS 386 1_555 E FE HEM . A HEM 800 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.135 ? metalc ? metalc7 G O CMO . A CMO 563 1_555 F FE HAS . A HAS 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.361 ? metalc ? metalc8 B ND1 HIS 114 B HIS 114 1_555 H CU2 CUA . B CUA 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.006 ? metalc ? metalc9 B SG CYS 149 B CYS 149 1_555 H CU1 CUA . B CUA 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.119 ? metalc ? metalc10 B SG CYS 149 B CYS 149 1_555 H CU2 CUA . B CUA 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.301 ? metalc ? metalc11 B O GLN 151 B GLN 151 1_555 H CU1 CUA . B CUA 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.519 ? metalc ? metalc12 B SG CYS 153 B CYS 153 1_555 H CU1 CUA . B CUA 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.088 ? metalc ? metalc13 B SG CYS 153 B CYS 153 1_555 H CU2 CUA . B CUA 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.332 ? metalc ? metalc14 B ND1 HIS 157 B HIS 157 1_555 H CU1 CUA . B CUA 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.977 ? metalc ? metalc15 B SD MET 160 B MET 160 1_555 H CU2 CUA . B CUA 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.273 ? # _chem_comp.formula 'C54 H64 Fe N4 O6' _chem_comp.formula_weight 920.954 _chem_comp.id HAS _chem_comp.mon_nstd_flag . _chem_comp.name HEME-AS _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag FE NA HAS sing 131 n n FE NB HAS sing 132 n n FE NC HAS sing 133 n n FE ND HAS sing 134 n n CHA C1A HAS doub 135 n y CHA C4D HAS sing 136 n y CHA HHA HAS sing 137 n n CHB C1D HAS doub 138 n y CHB C1B HAS sing 139 n y CHB HHB HAS sing 140 n n CHC C4B HAS doub 141 n y CHC C1C HAS sing 142 n y CHC HHC HAS sing 143 n n CHD C4C HAS sing 144 n y CHD C4A HAS doub 145 n y CHD HHD HAS sing 146 n n NA C1A HAS sing 147 n y NA C4A HAS sing 148 n y C1A C2A HAS sing 149 n y C2A C3A HAS doub 150 n y C2A CAA HAS sing 151 n n C3A C4A HAS sing 152 n y C3A CMA HAS sing 153 n n CMA HMA1 HAS sing 154 n n CMA HMA2 HAS sing 155 n n CMA HMA3 HAS sing 156 n n OMD CMD HAS doub 157 n n CAA CBA HAS sing 158 n n CAA HAA1 HAS sing 159 n n CAA HAA2 HAS sing 160 n n CBA CGA HAS sing 161 n n CBA HBA1 HAS sing 162 n n CBA HBA2 HAS sing 163 n n CGA O1A HAS doub 164 n n CGA O2A HAS sing 165 n n O2A H2A HAS sing 166 n n NB C1B HAS doub 167 n y NB C4B HAS sing 168 n y C1B C2B HAS sing 169 n n C2B C3B HAS doub 170 n n C2B CMB HAS sing 171 n n C3B C4B HAS sing 172 n n C3B C11 HAS sing 173 n n CMB HMB1 HAS sing 174 n n CMB HMB2 HAS sing 175 n n CMB HMB3 HAS sing 176 n n NC C1C HAS sing 177 n y NC C4C HAS sing 178 n y C1C C2C HAS doub 179 n y C2C C3C HAS sing 180 n y C2C CMC HAS sing 181 n n C3C C4C HAS doub 182 n y C3C CAC HAS sing 183 n n CMC HMC1 HAS sing 184 n n CMC HMC2 HAS sing 185 n n CMC HMC3 HAS sing 186 n n CAC CBC HAS doub 187 n n CAC HAC HAS sing 188 n n CBC HBC1 HAS sing 189 n n CBC HBC2 HAS sing 190 n n ND C1D HAS sing 191 n y ND C4D HAS doub 192 n y C1D C2D HAS sing 193 n n C2D C3D HAS doub 194 n n C2D CMD HAS sing 195 n n C3D C4D HAS sing 196 n n C3D CAD HAS sing 197 n n CMD HMD HAS sing 198 n n CAD CBD HAS sing 199 n n CAD HAD1 HAS sing 200 n n CAD HAD2 HAS sing 201 n n CBD CGD HAS sing 202 n n CBD HBD1 HAS sing 203 n n CBD HBD2 HAS sing 204 n n CGD O1D HAS doub 205 n n CGD O2D HAS sing 206 n n O2D H2D HAS sing 207 n n C11 O11 HAS sing 208 n n C11 C12 HAS sing 209 n n C11 H11 HAS sing 210 n n O11 HO1 HAS sing 211 n n C12 C13 HAS sing 212 n n C12 H121 HAS sing 213 n n C12 H122 HAS sing 214 n n C13 C14 HAS sing 215 n n C13 H131 HAS sing 216 n n C13 H132 HAS sing 217 n n C14 C15 HAS doub 218 e n C14 H14 HAS sing 219 n n C15 C16 HAS sing 220 n n C15 C26 HAS sing 221 n n C16 C17 HAS sing 222 n n C16 H161 HAS sing 223 n n C16 H162 HAS sing 224 n n C17 C18 HAS sing 225 n n C17 H171 HAS sing 226 n n C17 H172 HAS sing 227 n n C18 C19 HAS doub 228 e n C18 H18 HAS sing 229 n n C19 C20 HAS sing 230 n n C19 C27 HAS sing 231 n n C20 C21 HAS sing 232 n n C20 H201 HAS sing 233 n n C20 H202 HAS sing 234 n n C21 C22 HAS sing 235 n n C21 H211 HAS sing 236 n n C21 H212 HAS sing 237 n n C22 C23 HAS doub 238 e n C22 H22 HAS sing 239 n n C23 C24 HAS sing 240 n n C23 C25 HAS sing 241 n n C24 C28 HAS sing 242 n n C24 H241 HAS sing 243 n n C24 H242 HAS sing 244 n n C25 H251 HAS sing 245 n n C25 H252 HAS sing 246 n n C25 H253 HAS sing 247 n n C26 H261 HAS sing 248 n n C26 H262 HAS sing 249 n n C26 H263 HAS sing 250 n n C27 H271 HAS sing 251 n n C27 H272 HAS sing 252 n n C27 H273 HAS sing 253 n n C28 C29 HAS sing 254 n n C28 H281 HAS sing 255 n n C28 H282 HAS sing 256 n n C29 C30 HAS doub 257 n n C29 H29 HAS sing 258 n n C30 C31 HAS sing 259 n n C30 C32 HAS sing 260 n n C31 H311 HAS sing 261 n n C31 H312 HAS sing 262 n n C31 H313 HAS sing 263 n n C32 H321 HAS sing 264 n n C32 H322 HAS sing 265 n n C32 H323 HAS sing 266 n n # _atom_sites.entry_id 3QJV _atom_sites.fract_transf_matrix[1][1] 0.009094 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009094 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005927 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 CU1 A 1 803 803 CU1 CU1 . E 5 HEM A 1 800 800 HEM HEM . F 6 HAS A 1 801 801 HAS HAS . G 7 CMO A 1 563 1 CMO CMO . H 8 CUA B 1 802 802 CUA CUA . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 FE FE HAS . . . F 6 30.496 -28.697 0.766 1 33.49 ? FE HAS 801 A 1 HETATM 2 C CHA HAS . . . F 6 27.882 -26.754 1.894 1 31.13 ? CHA HAS 801 A 1 HETATM 3 C CHB HAS . . . F 6 31.683 -25.99 -1.072 1 33.89 ? CHB HAS 801 A 1 HETATM 4 C CHC HAS . . . F 6 33.373 -30.474 -0.081 1 33.11 ? CHC HAS 801 A 1 HETATM 5 C CHD HAS . . . F 6 29.835 -30.981 3.341 1 32.57 ? CHD HAS 801 A 1 HETATM 6 N NA HAS . . . F 6 29.083 -28.868 2.315 1 31.44 ? NA HAS 801 A 1 HETATM 7 C C1A HAS . . . F 6 28.12 -27.989 2.649 1 32.09 ? C1A HAS 801 A 1 HETATM 8 C C2A HAS . . . F 6 27.275 -28.367 3.828 1 33.74 ? C2A HAS 801 A 1 HETATM 9 C C3A HAS . . . F 6 27.883 -29.645 4.229 1 32.95 ? C3A HAS 801 A 1 HETATM 10 C C4A HAS . . . F 6 28.965 -29.814 3.254 1 31.48 ? C4A HAS 801 A 1 HETATM 11 C CMA HAS . . . F 6 27.513 -30.515 5.388 1 33.47 ? CMA HAS 801 A 1 HETATM 12 O OMD HAS . . . F 6 31.439 -23.03 -0.996 1 34.57 ? OMD HAS 801 A 1 HETATM 13 C CAA HAS . . . F 6 26.094 -27.656 4.441 1 30.9 ? CAA HAS 801 A 1 HETATM 14 C CBA HAS . . . F 6 26.383 -26.935 5.739 1 31 ? CBA HAS 801 A 1 HETATM 15 C CGA HAS . . . F 6 25.025 -26.437 6.2 1 34.56 ? CGA HAS 801 A 1 HETATM 16 O O1A HAS . . . F 6 24.321 -27.225 6.922 1 34.64 ? O1A HAS 801 A 1 HETATM 17 O O2A HAS . . . F 6 24.62 -25.284 5.799 1 34.13 ? O2A HAS 801 A 1 HETATM 18 N NB HAS . . . F 6 32.173 -28.288 -0.422 1 34.65 ? NB HAS 801 A 1 HETATM 19 C C1B HAS . . . F 6 32.509 -27.18 -1.104 1 34.06 ? C1B HAS 801 A 1 HETATM 20 C C2B HAS . . . F 6 33.714 -27.271 -1.815 1 33.98 ? C2B HAS 801 A 1 HETATM 21 C C3B HAS . . . F 6 34.201 -28.536 -1.514 1 34.89 ? C3B HAS 801 A 1 HETATM 22 C C4B HAS . . . F 6 33.251 -29.102 -0.658 1 35 ? C4B HAS 801 A 1 HETATM 23 C CMB HAS . . . F 6 34.403 -26.25 -2.698 1 32.51 ? CMB HAS 801 A 1 HETATM 24 N NC HAS . . . F 6 31.438 -30.421 1.503 1 33 ? NC HAS 801 A 1 HETATM 25 C C1C HAS . . . F 6 32.603 -30.993 1.089 1 33.2 ? C1C HAS 801 A 1 HETATM 26 C C2C HAS . . . F 6 32.995 -32.213 1.86 1 32.32 ? C2C HAS 801 A 1 HETATM 27 C C3C HAS . . . F 6 31.912 -32.309 2.858 1 31.71 ? C3C HAS 801 A 1 HETATM 28 C C4C HAS . . . F 6 31.049 -31.187 2.55 1 32.1 ? C4C HAS 801 A 1 HETATM 29 C CMC HAS . . . F 6 34.18 -33.098 1.679 1 30.73 ? CMC HAS 801 A 1 HETATM 30 C CAC HAS . . . F 6 31.675 -33.304 3.93 1 30.65 ? CAC HAS 801 A 1 HETATM 31 C CBC HAS . . . F 6 32.48 -34.344 4.049 1 29.69 ? CBC HAS 801 A 1 HETATM 32 N ND HAS . . . F 6 29.885 -26.72 0.456 1 32.97 ? ND HAS 801 A 1 HETATM 33 C C1D HAS . . . F 6 30.519 -25.771 -0.235 1 33.92 ? C1D HAS 801 A 1 HETATM 34 C C2D HAS . . . F 6 29.857 -24.567 -0.188 1 36.04 ? C2D HAS 801 A 1 HETATM 35 C C3D HAS . . . F 6 28.694 -24.771 0.706 1 33.95 ? C3D HAS 801 A 1 HETATM 36 C C4D HAS . . . F 6 28.842 -26.079 1.046 1 31.95 ? C4D HAS 801 A 1 HETATM 37 C CMD HAS . . . F 6 30.259 -23.314 -0.888 1 35.29 ? CMD HAS 801 A 1 HETATM 38 C CAD HAS . . . F 6 27.63 -23.815 1.131 1 33.57 ? CAD HAS 801 A 1 HETATM 39 C CBD HAS . . . F 6 26.457 -23.922 0.18 1 34.79 ? CBD HAS 801 A 1 HETATM 40 C CGD HAS . . . F 6 25.39 -23.016 0.738 1 34.78 ? CGD HAS 801 A 1 HETATM 41 O O1D HAS . . . F 6 24.777 -22.198 -0.01 1 34.18 ? O1D HAS 801 A 1 HETATM 42 O O2D HAS . . . F 6 25.215 -23.131 1.96 1 34.68 ? O2D HAS 801 A 1 HETATM 43 C C11 HAS . . . F 6 35.466 -29.137 -2.002 1 35.38 ? C11 HAS 801 A 1 HETATM 44 O O11 HAS . . . F 6 36.2 -29.382 -0.822 1 37.32 ? O11 HAS 801 A 1 HETATM 45 C C12 HAS . . . F 6 35.243 -30.433 -2.787 1 34.48 ? C12 HAS 801 A 1 HETATM 46 C C13 HAS . . . F 6 36.494 -30.881 -3.502 1 33.05 ? C13 HAS 801 A 1 HETATM 47 C C14 HAS . . . F 6 36.184 -32.163 -4.251 1 32.48 ? C14 HAS 801 A 1 HETATM 48 C C15 HAS . . . F 6 36.72 -32.513 -5.446 1 32.75 ? C15 HAS 801 A 1 HETATM 49 C C16 HAS . . . F 6 36.347 -33.837 -6.112 1 32.41 ? C16 HAS 801 A 1 HETATM 50 C C17 HAS . . . F 6 37.583 -34.688 -6.486 1 33.71 ? C17 HAS 801 A 1 HETATM 51 C C18 HAS . . . F 6 37.221 -36.177 -6.593 1 35.33 ? C18 HAS 801 A 1 HETATM 52 C C19 HAS . . . F 6 37.754 -37.282 -5.953 1 34.35 ? C19 HAS 801 A 1 HETATM 53 C C20 HAS . . . F 6 37.207 -38.688 -6.249 1 33.58 ? C20 HAS 801 A 1 HETATM 54 C C21 HAS . . . F 6 37.848 -39.369 -7.497 1 34.25 ? C21 HAS 801 A 1 HETATM 55 C C22 HAS . . . F 6 37.347 -40.813 -7.686 1 33.91 ? C22 HAS 801 A 1 HETATM 56 C C23 HAS . . . F 6 38.148 -41.916 -7.673 1 32.94 ? C23 HAS 801 A 1 HETATM 57 C C24 HAS . . . F 6 37.586 -43.318 -7.834 1 32.31 ? C24 HAS 801 A 1 HETATM 58 C C25 HAS . . . F 6 39.63 -41.778 -7.49 1 32.38 ? C25 HAS 801 A 1 HETATM 59 C C26 HAS . . . F 6 37.712 -31.606 -6.118 1 32.74 ? C26 HAS 801 A 1 HETATM 60 C C27 HAS . . . F 6 38.868 -37.144 -4.964 1 31.23 ? C27 HAS 801 A 1 HETATM 61 C C28 HAS . . . F 6 38.08 -43.961 -9.127 1 33.75 ? C28 HAS 801 A 1 HETATM 62 C C29 HAS . . . F 6 37.941 -45.465 -9.07 1 33.32 ? C29 HAS 801 A 1 HETATM 63 C C30 HAS . . . F 6 37.487 -46.216 -10.093 1 33.48 ? C30 HAS 801 A 1 HETATM 64 C C31 HAS . . . F 6 37.404 -47.704 -9.899 1 33.67 ? C31 HAS 801 A 1 HETATM 65 C C32 HAS . . . F 6 37.039 -45.63 -11.404 1 31.94 ? C32 HAS 801 A 1 # _model_server_stats.io_time_ms 82 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 302 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 65 #