data_3QK1
#
_model_server_result.job_id            PmHMYP6nfrnzWAjsS_24yg 
_model_server_result.datetime_utc      '2024-12-26 23:06:04' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3qk1 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"G","auth_seq_id":1005}' 
#
_entry.id    3QK1 
#
_exptl.entry_id    3QK1 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              62.068 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-ETHANEDIOL 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            3QK1 
_cell.length_a            60.71 
_cell.length_b            63.76 
_cell.length_c            69.69 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3QK1 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 F N N 
? 4 G N N 
? 4 H N N 
? 4 J N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 7 A CYS 22 1_555 A SG CYS 137 A CYS 157 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.057 ? 
disulf ? disulf2 A SG CYS 25 A CYS 42 1_555 A SG CYS 41 A CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.019 ? 
disulf ? disulf3 A SG CYS 109 A CYS 128 1_555 A SG CYS 210 A CYS 232 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.05 ? 
disulf ? disulf4 A SG CYS 116 A CYS 136 1_555 A SG CYS 183 A CYS 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf5 A SG CYS 148 A CYS 168 1_555 A SG CYS 162 A CYS 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.996 ? 
disulf ? disulf6 A SG CYS 173 A CYS 191 1_555 A SG CYS 197 A CYS 220 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? 
metalc ? metalc1 A OE1 GLU 52 A GLU 70 1_555 B CA CA . A CA 1000 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.373 ? 
metalc ? metalc2 A O ASN 54 A ASN 72 1_555 B CA CA . A CA 1000 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.438 ? 
metalc ? metalc3 A O VAL 57 A VAL 75 1_555 B CA CA . A CA 1000 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.333 ? 
metalc ? metalc4 A OE2 GLU 62 A GLU 80 1_555 B CA CA . A CA 1000 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.104 ? 
metalc ? metalc5 B CA CA . A CA 1000 1_555 M O HOH . A HOH 2020 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.271 ? 
metalc ? metalc6 B CA CA . A CA 1000 1_555 M O HOH . A HOH 2034 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.511 ? 
#
_chem_comp.formula           'C2 H6 O2' 
_chem_comp.formula_weight    62.068 
_chem_comp.id                EDO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,2-ETHANEDIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'ETHYLENE GLYCOL' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 EDO sing 100 n n 
C1 C2 EDO sing 101 n n 
C1 H11 EDO sing 102 n n 
C1 H12 EDO sing 103 n n 
O1 HO1 EDO sing 104 n n 
C2 O2 EDO sing 105 n n 
C2 H21 EDO sing 106 n n 
C2 H22 EDO sing 107 n n 
O2 HO2 EDO sing 108 n n 
#
_atom_sites.entry_id                     3QK1 
_atom_sites.fract_transf_matrix[1][1]    0.016472 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.015684 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.014349 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 CA A 1 1000 1000 CA CA . 
C 3 SO4 A 1 1001 1001 SO4 SO4 . 
D 3 SO4 A 1 1002 1002 SO4 SO4 . 
E 3 SO4 A 1 1003 1003 SO4 SO4 . 
F 4 EDO A 1 1004 1004 EDO EDO . 
G 4 EDO A 1 1005 1005 EDO EDO . 
H 4 EDO A 1 1006 1006 EDO EDO . 
I 5 IMD A 1 1007 1007 IMD IMD . 
J 4 EDO A 1 1008 1008 EDO EDO . 
K 6 GOL A 1 1009 1009 GOL GOL . 
L 7 BEN A 1 1010 1010 BEN BDN . 
M 8 HOH A 1 2000 2000 HOH HOH . 
M 8 HOH A 2 2001 2001 HOH HOH . 
M 8 HOH A 3 2002 2002 HOH HOH . 
M 8 HOH A 4 2003 2003 HOH HOH . 
M 8 HOH A 5 2004 2004 HOH HOH . 
M 8 HOH A 6 2005 2005 HOH HOH . 
M 8 HOH A 7 2006 2006 HOH HOH . 
M 8 HOH A 8 2007 2007 HOH HOH . 
M 8 HOH A 9 2008 2008 HOH HOH . 
M 8 HOH A 10 2009 2009 HOH HOH . 
M 8 HOH A 11 2010 2010 HOH HOH . 
M 8 HOH A 12 2011 2011 HOH HOH . 
M 8 HOH A 13 2012 2012 HOH HOH . 
M 8 HOH A 14 2013 2013 HOH HOH . 
M 8 HOH A 15 2014 2014 HOH HOH . 
M 8 HOH A 16 2015 2015 HOH HOH . 
M 8 HOH A 17 2016 2016 HOH HOH . 
M 8 HOH A 18 2017 2017 HOH HOH . 
M 8 HOH A 19 2018 2018 HOH HOH . 
M 8 HOH A 20 2019 2019 HOH HOH . 
M 8 HOH A 21 2020 2020 HOH HOH . 
M 8 HOH A 22 2021 2021 HOH HOH . 
M 8 HOH A 23 2022 2022 HOH HOH . 
M 8 HOH A 24 2023 2023 HOH HOH . 
M 8 HOH A 25 2024 2024 HOH HOH . 
M 8 HOH A 26 2025 2025 HOH HOH . 
M 8 HOH A 27 2026 2026 HOH HOH . 
M 8 HOH A 28 2027 2027 HOH HOH . 
M 8 HOH A 29 2028 2028 HOH HOH . 
M 8 HOH A 30 2029 2029 HOH HOH . 
M 8 HOH A 31 2030 2030 HOH HOH . 
M 8 HOH A 32 2031 2031 HOH HOH . 
M 8 HOH A 33 2032 2032 HOH HOH . 
M 8 HOH A 34 2033 2033 HOH HOH . 
M 8 HOH A 35 2034 2034 HOH HOH . 
M 8 HOH A 36 2035 2035 HOH HOH . 
M 8 HOH A 37 2036 2036 HOH HOH . 
M 8 HOH A 38 2037 2037 HOH HOH . 
M 8 HOH A 39 2038 2038 HOH HOH . 
M 8 HOH A 40 2039 2039 HOH HOH . 
M 8 HOH A 41 2040 2040 HOH HOH . 
M 8 HOH A 42 2041 2041 HOH HOH . 
M 8 HOH A 43 2042 2042 HOH HOH . 
M 8 HOH A 44 2043 2043 HOH HOH . 
M 8 HOH A 45 2044 2044 HOH HOH . 
M 8 HOH A 46 2045 2045 HOH HOH . 
M 8 HOH A 47 2046 2046 HOH HOH . 
M 8 HOH A 48 2047 2047 HOH HOH . 
M 8 HOH A 49 2048 2048 HOH HOH . 
M 8 HOH A 50 2049 2049 HOH HOH . 
M 8 HOH A 51 2050 2050 HOH HOH . 
M 8 HOH A 52 2051 2051 HOH HOH . 
M 8 HOH A 53 2052 2052 HOH HOH . 
M 8 HOH A 54 2053 2053 HOH HOH . 
M 8 HOH A 55 2054 2054 HOH HOH . 
M 8 HOH A 56 2055 2055 HOH HOH . 
M 8 HOH A 57 2056 2056 HOH HOH . 
M 8 HOH A 58 2057 2057 HOH HOH . 
M 8 HOH A 59 2058 2058 HOH HOH . 
M 8 HOH A 60 2059 2059 HOH HOH . 
M 8 HOH A 61 2060 2060 HOH HOH . 
M 8 HOH A 62 2061 2061 HOH HOH . 
M 8 HOH A 63 2062 2062 HOH HOH . 
M 8 HOH A 64 2063 2063 HOH HOH . 
M 8 HOH A 65 2064 2064 HOH HOH . 
M 8 HOH A 66 2065 2065 HOH HOH . 
M 8 HOH A 67 2066 2066 HOH HOH . 
M 8 HOH A 68 2067 2067 HOH HOH . 
M 8 HOH A 69 2068 2068 HOH HOH . 
M 8 HOH A 70 2069 2069 HOH HOH . 
M 8 HOH A 71 2070 2070 HOH HOH . 
M 8 HOH A 72 2071 2071 HOH HOH . 
M 8 HOH A 73 2072 2072 HOH HOH . 
M 8 HOH A 74 2073 2073 HOH HOH . 
M 8 HOH A 75 2074 2074 HOH HOH . 
M 8 HOH A 76 2075 2075 HOH HOH . 
M 8 HOH A 77 2076 2076 HOH HOH . 
M 8 HOH A 78 2077 2077 HOH HOH . 
M 8 HOH A 79 2078 2078 HOH HOH . 
M 8 HOH A 80 2079 2079 HOH HOH . 
M 8 HOH A 81 2080 2080 HOH HOH . 
M 8 HOH A 82 2081 2081 HOH HOH . 
M 8 HOH A 83 2082 2082 HOH HOH . 
M 8 HOH A 84 2083 2083 HOH HOH . 
M 8 HOH A 85 2084 2084 HOH HOH . 
M 8 HOH A 86 2085 2085 HOH HOH . 
M 8 HOH A 87 2086 2086 HOH HOH . 
M 8 HOH A 88 2087 2087 HOH HOH . 
M 8 HOH A 89 2088 2088 HOH HOH . 
M 8 HOH A 90 2089 2089 HOH HOH . 
M 8 HOH A 91 2090 2090 HOH HOH . 
M 8 HOH A 92 2091 2091 HOH HOH . 
M 8 HOH A 93 2092 2092 HOH HOH . 
M 8 HOH A 94 2093 2093 HOH HOH . 
M 8 HOH A 95 2094 2094 HOH HOH . 
M 8 HOH A 96 2095 2095 HOH HOH . 
M 8 HOH A 97 2096 2096 HOH HOH . 
M 8 HOH A 98 2097 2097 HOH HOH . 
M 8 HOH A 99 2098 2098 HOH HOH . 
M 8 HOH A 100 2099 2099 HOH HOH . 
M 8 HOH A 101 2100 2100 HOH HOH . 
M 8 HOH A 102 2101 2101 HOH HOH . 
M 8 HOH A 103 2102 2102 HOH HOH . 
M 8 HOH A 104 2103 2103 HOH HOH . 
M 8 HOH A 105 2104 2104 HOH HOH . 
M 8 HOH A 106 2105 2105 HOH HOH . 
M 8 HOH A 107 2106 2106 HOH HOH . 
M 8 HOH A 108 2107 2107 HOH HOH . 
M 8 HOH A 109 2108 2108 HOH HOH . 
M 8 HOH A 110 2109 2109 HOH HOH . 
M 8 HOH A 111 2110 2110 HOH HOH . 
M 8 HOH A 112 2111 2111 HOH HOH . 
M 8 HOH A 113 2112 2112 HOH HOH . 
M 8 HOH A 114 2113 2113 HOH HOH . 
M 8 HOH A 115 2114 2114 HOH HOH . 
M 8 HOH A 116 2115 2115 HOH HOH . 
M 8 HOH A 117 2116 2116 HOH HOH . 
M 8 HOH A 118 2117 2117 HOH HOH . 
M 8 HOH A 119 2118 2118 HOH HOH . 
M 8 HOH A 120 2119 2119 HOH HOH . 
M 8 HOH A 121 2120 2120 HOH HOH . 
M 8 HOH A 122 2121 2121 HOH HOH . 
M 8 HOH A 123 2122 2122 HOH HOH . 
M 8 HOH A 124 2123 2123 HOH HOH . 
M 8 HOH A 125 2124 2124 HOH HOH . 
M 8 HOH A 126 2125 2125 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 EDO . . . G 4 18.072 21.608 21.178 1 34.68 ? C1 EDO 1005 A 1 
HETATM 2 O O1 EDO . . . G 4 16.851 22.403 21.17 1 35.53 ? O1 EDO 1005 A 1 
HETATM 3 C C2 EDO . . . G 4 18.411 20.963 22.531 1 32.59 ? C2 EDO 1005 A 1 
HETATM 4 O O2 EDO . . . G 4 19.212 21.783 23.434 1 33.25 ? O2 EDO 1005 A 1 
#
_model_server_stats.io_time_ms              7 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           363 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           4 
#