data_3QKG # _model_server_result.job_id -tcY2r1yWtcm-TWWyeXXqQ _model_server_result.datetime_utc '2025-08-31 13:57:31' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3qkg # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":195}' # _entry.id 3QKG # _exptl.entry_id 3QKG _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3QKG _cell.length_a 66.721 _cell.length_b 66.721 _cell.length_c 80.255 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3QKG _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 72 A CYS 72 1_555 A SG CYS 169 A CYS 169 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? metalc ? metalc1 A NE2 HIS 122 A HIS 122 1_555 B NI NI . A NI 194 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.936 ? metalc ? metalc2 B NI NI . A NI 194 1_555 D O HOH . A HOH 196 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.237 ? metalc ? metalc3 B NI NI . A NI 194 1_555 D O HOH . A HOH 197 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.255 ? metalc ? metalc4 B NI NI . A NI 194 1_555 D O HOH . A HOH 198 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.249 ? metalc ? metalc5 B NI NI . A NI 194 1_555 D O HOH . A HOH 199 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.729 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 3QKG _atom_sites.fract_transf_matrix[1][1] 0.014988 _atom_sites.fract_transf_matrix[1][2] 0.008653 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017306 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01246 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NI A 1 194 1 NI NI . C 3 GOL A 1 195 1 GOL GOL . D 4 HOH A 1 196 1 HOH HOH . D 4 HOH A 2 197 2 HOH HOH . D 4 HOH A 3 198 3 HOH HOH . D 4 HOH A 4 199 4 HOH HOH . D 4 HOH A 5 200 5 HOH HOH . D 4 HOH A 6 201 6 HOH HOH . D 4 HOH A 7 202 7 HOH HOH . D 4 HOH A 8 203 8 HOH HOH . D 4 HOH A 9 204 9 HOH HOH . D 4 HOH A 10 205 10 HOH HOH . D 4 HOH A 11 206 11 HOH HOH . D 4 HOH A 12 207 12 HOH HOH . D 4 HOH A 13 208 13 HOH HOH . D 4 HOH A 14 209 14 HOH HOH . D 4 HOH A 15 210 15 HOH HOH . D 4 HOH A 16 211 16 HOH HOH . D 4 HOH A 17 212 17 HOH HOH . D 4 HOH A 18 213 18 HOH HOH . D 4 HOH A 19 214 19 HOH HOH . D 4 HOH A 20 215 20 HOH HOH . D 4 HOH A 21 216 21 HOH HOH . D 4 HOH A 22 217 22 HOH HOH . D 4 HOH A 23 218 23 HOH HOH . D 4 HOH A 24 219 24 HOH HOH . D 4 HOH A 25 220 25 HOH HOH . D 4 HOH A 26 221 26 HOH HOH . D 4 HOH A 27 222 27 HOH HOH . D 4 HOH A 28 223 28 HOH HOH . D 4 HOH A 29 224 29 HOH HOH . D 4 HOH A 30 225 30 HOH HOH . D 4 HOH A 31 226 31 HOH HOH . D 4 HOH A 32 227 32 HOH HOH . D 4 HOH A 33 228 33 HOH HOH . D 4 HOH A 34 229 34 HOH HOH . D 4 HOH A 35 230 35 HOH HOH . D 4 HOH A 36 231 36 HOH HOH . D 4 HOH A 37 232 37 HOH HOH . D 4 HOH A 38 233 38 HOH HOH . D 4 HOH A 39 234 39 HOH HOH . D 4 HOH A 40 235 40 HOH HOH . D 4 HOH A 41 236 41 HOH HOH . D 4 HOH A 42 237 42 HOH HOH . D 4 HOH A 43 238 43 HOH HOH . D 4 HOH A 44 239 44 HOH HOH . D 4 HOH A 45 240 45 HOH HOH . D 4 HOH A 46 241 46 HOH HOH . D 4 HOH A 47 242 47 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . C 3 -8.189 17.102 25.441 1 85.73 ? C1 GOL 195 A 1 HETATM 2 O O1 GOL . . . C 3 -9.462 16.5 25.551 1 86.22 ? O1 GOL 195 A 1 HETATM 3 C C2 GOL . . . C 3 -7.478 16.515 24.222 1 85.31 ? C2 GOL 195 A 1 HETATM 4 O O2 GOL . . . C 3 -6.381 17.33 23.825 1 84.08 ? O2 GOL 195 A 1 HETATM 5 C C3 GOL . . . C 3 -7.155 15.029 24.434 1 84.58 ? C3 GOL 195 A 1 HETATM 6 O O3 GOL . . . C 3 -5.762 14.789 24.384 1 83.86 ? O3 GOL 195 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 397 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 6 #